Rh7CG008100

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001437
Physical Location & Seq
Forward (+)
608903 .. 610675
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG008100.1

Sequence Viewer

Length: 1104 bp
ATGGCTAATACCCCTGTTCCAGTATTCCTAATCAACCTTATAGCTCTGTCAGCTTCAATATTATTCTCTGTCATAATCAATCCCTCCGGCGCCGTGTTCGTGAGCAACAGCGTAAGAATCTTCCCAGCCTTGAAGAAAAACTGTTACACCATCCCAGTTGACAAAGCTGGCCAAAGAATTCTGGTTCGAGCAAGTTTCTTTTATTGGGGCTTTTATGTTAATAAGACTTCTCCCACCTTTGAGCTCCAGTTTGACGGCAACTACTGGACCACCGTTAACAAACCCAATATTGTTTCTTATGAGGCAATCTATGTTGCCAAGCAGAATACGACTAGCATATGTCTTGCTCGAATTGAAGATGATCAGATCCCATTCATTTCTGCACTCGAAATTCAAAGCTTGGATTTCAAAATGTACAGCCATGTCGATCCCAAGTATGCTCTTCTGTTGGCAAATAGGTTTTATGATGGTGGAAATCAAACTCTCAGGTATCCAGATGATGCATATGATCGAATTTGGGTGCCGCAGATTGGTTTTGGATCAATTACTGTGAGCGTGAAAGGTAACGGTGGGAGCAGGCTTCCAGACGATAAGAACGTACCAATTTACATCACAACTTACTTTTCTGAAGTTGACAAAACGATCAAAAGATCCCTACAATTTTCGATAGACAGCAAGCCTTATGATCGACCTGTGGTTCCACCTTTAGGAAGCGTAGCCGTAGTGTACATTACCAACATGACGGCATCTTCTAACACTAGTTTCAGCATACAGGCAGCTGCTGATTCCTCGATTCCTCCCCTCATCAATGCCTATGAAGTTTATACCATCACTGGACCTCTAGCACAAGCAACCAACTCTAAAGATGGTTCACTTCCAGACTTCAGTTCCATGTGTAACTGTCTCTCGGGAATGTCATGTTCACCGGCTTCTGTATCAGCACCACCCTCACCAGGACTACAAACACCTGCTCCCGGTGGCCCTAACCCGAACCCAATTCATACACCCTCTTCAGTAGACAAGGAGTTTAGTGGCAAGCTACAGATAATACTACTCCTAGGAGCCATTATTCACTTTTCTCTTCCTTCCATGTTCAGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

367

Amino Acids

40.01

Weight (kDa)

6.81

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 36 - 176 2.1e-36 Malectin-like domain
Malectin_like PF12819 196 - 277 1e-09 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 976
Acc36I ACCTGC 1 cut(s) 976
AccB1I GGYRCC 2 cut(s) 89, 520
AccI GTMKAC 1 cut(s) 1017
AciI CCGC 1 cut(s) 524
AclWI GGATC 4 cut(s) 361, 422, 547, 645
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 3 cut(s) 177, 390, 513
AcuI CTGAAG 3 cut(s) 648, 868, 996
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 3 cut(s) 416, 600, 728
AfiI CCNNNNNNNGG 4 cut(s) 530, 707, 953, 974
AgsI TTSAA 5 cut(s) 57, 133, 356, 395, 409
AhlI ACTAGT 1 cut(s) 758
AjnI CCWGG 1 cut(s) 952
AluBI AGCT 8 cut(s) 44, 53, 167, 244, 399, 779, 1039, 1098
AluI AGCT 8 cut(s) 44, 53, 167, 244, 399, 779, 1039, 1098
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 908
AlwI GGATC 4 cut(s) 361, 422, 547, 645
AlwNI CAGNNNCTG 1 cut(s) 782
Ama87I CYCGRG 1 cut(s) 907
AoxI GGCC 2 cut(s) 169, 979
ApeKI GCWGC 2 cut(s) 776, 779
ApoI RAATTY 3 cut(s) 177, 390, 513
AspA2I CCTAGG 1 cut(s) 1057
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 3 cut(s) 267, 836, 980
AsuC2I CCSGG 1 cut(s) 975
AsuHPI GGTGA 2 cut(s) 915, 942
AvaI CYCGRG 1 cut(s) 907
AvaII GGWCC 2 cut(s) 267, 836
AvrII CCTAGG 1 cut(s) 1057
BalI TGGCCA 1 cut(s) 171
BanI GGYRCC 2 cut(s) 89, 520
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 766, 788
BccI CCATC 4 cut(s) 158, 461, 836, 860
BceAI ACGGC 4 cut(s) 77, 271, 704, 759
BciT130I CCWGG 1 cut(s) 954
BciVI GTATCC 1 cut(s) 501
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 1 cut(s) 975
BcoDI GTCTC 1 cut(s) 908
BcuI ACTAGT 1 cut(s) 758
BfaI CTAG 4 cut(s) 333, 759, 842, 1058
BfmI CTRYAG 1 cut(s) 1040
BfoI RGCGCY 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 976
BfuI GTATCC 1 cut(s) 501
BisI GCNGC 3 cut(s) 524, 777, 780
BlnI CCTAGG 1 cut(s) 1057
BlsI GCNGC 3 cut(s) 525, 778, 781
Bme1390I CCNGG 2 cut(s) 954, 975
Bme18I GGWCC 2 cut(s) 267, 836
BmeT110I CYCGRG 1 cut(s) 907
BmgT120I GGNCC 3 cut(s) 267, 836, 980
BmiI GGNNCC 4 cut(s) 91, 522, 699, 1063
BmrFI CCNGG 2 cut(s) 954, 975
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 490, 755
BmuI ACTGGG 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 975
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 1057
BsaXI ACNNNNNCTCC 2 cut(s) 955, 985
Bsc4I CCNNNNNNNGG 4 cut(s) 530, 707, 953, 974
Bse118I RCCGGY 1 cut(s) 925
Bse1I ACTGG 5 cut(s) 20, 155, 247, 269, 838
BseBI CCWGG 1 cut(s) 954
BseDI CCNNGG 1 cut(s) 1057
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 4 cut(s) 530, 707, 953, 974
BseMII CTCAG 1 cut(s) 499
BseNI ACTGG 5 cut(s) 20, 155, 247, 269, 838
BseXI GCAGC 2 cut(s) 766, 788
BseYI CCCAGC 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 366
BshFI GGCC 2 cut(s) 171, 981
BshNI GGYRCC 2 cut(s) 89, 520
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 907
BsiSI CCGG 3 cut(s) 87, 926, 975
BslI CCNNNNNNNGG 4 cut(s) 530, 707, 953, 974
BsmAI GTCTC 1 cut(s) 908
BsnI GGCC 2 cut(s) 171, 981
BsoBI CYCGRG 1 cut(s) 907
Bsp1286I GDGCHC 1 cut(s) 246
Bsp1407I TGTACA 2 cut(s) 414, 726
Bsp143I GATC 8 cut(s) 361, 366, 427, 508, 539, 642, 650, 685
BspACI CCGC 1 cut(s) 524
BspANI GGCC 2 cut(s) 171, 981
BspCNI CTCAG 1 cut(s) 498
BspLI GGNNCC 4 cut(s) 91, 522, 699, 1063
BspMI ACCTGC 1 cut(s) 976
BspPI GGATC 4 cut(s) 361, 422, 547, 645
BspQI GCTCTTC 1 cut(s) 447
BspT107I GGYRCC 2 cut(s) 89, 520
BsrFI RCCGGY 1 cut(s) 925
BsrGI TGTACA 2 cut(s) 414, 726
BsrI ACTGG 5 cut(s) 20, 155, 247, 269, 838
BssAI RCCGGY 1 cut(s) 925
BssECI CCNNGG 1 cut(s) 1057
BssMI GATC 8 cut(s) 361, 366, 427, 508, 539, 642, 650, 685
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 1057
Bst2UI CCWGG 1 cut(s) 954
Bst4CI ACNGT 5 cut(s) 143, 274, 550, 569, 902
Bst6I CTCTTC 3 cut(s) 447, 1015, 1086
BstACI GRCGYC 1 cut(s) 90
BstAUI TGTACA 2 cut(s) 414, 726
BstC8I GCNNGC 4 cut(s) 169, 578, 677, 1037
BstDEI CTNAG 1 cut(s) 485
BstF5I GGATG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 8 cut(s) 364, 369, 430, 511, 542, 645, 653, 688
BstMAI GTCTC 1 cut(s) 908
BstMBI GATC 8 cut(s) 361, 366, 427, 508, 539, 642, 650, 685
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 954
BstSCI CCNGG 2 cut(s) 952, 973
BstSFI CTRYAG 1 cut(s) 1040
BstV1I GCAGC 2 cut(s) 766, 788
BstX2I RGATCY 2 cut(s) 366, 650
BstYI RGATCY 2 cut(s) 366, 650
BsuI GTATCC 1 cut(s) 501
BsuRI GGCC 2 cut(s) 171, 981
BtsCI GGATG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 831
BveI ACCTGC 1 cut(s) 976
Cac8I GCNNGC 4 cut(s) 169, 578, 677, 1037
CaiI CAGNNNCTG 1 cut(s) 782
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 925
Cfr13I GGNCC 3 cut(s) 267, 836, 980
Csp6I GTAC 3 cut(s) 415, 599, 727
CviAII CATG 5 cut(s) 422, 739, 892, 918, 1090
CviQI GTAC 3 cut(s) 415, 599, 727
DdeI CTNAG 1 cut(s) 485
DinI GGCGCC 1 cut(s) 91
DpnI GATC 8 cut(s) 363, 368, 429, 510, 541, 644, 652, 687
DpnII GATC 8 cut(s) 361, 366, 427, 508, 539, 642, 650, 685
EaeI YGGCCR 1 cut(s) 169
Eam1104I CTCTTC 3 cut(s) 447, 1015, 1086
EarI CTCTTC 3 cut(s) 447, 1015, 1086
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 1057
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 2 cut(s) 267, 836
Eco53kI GAGCTC 1 cut(s) 244
Eco57I CTGAAG 3 cut(s) 648, 868, 996
Eco88I CYCGRG 1 cut(s) 907
EcoICRI GAGCTC 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 952
EcoT14I CCWWGG 1 cut(s) 1057
EcoT22I ATGCAT 1 cut(s) 505
EcoT38I GRGCYC 1 cut(s) 246
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 1057
FaeI CATG 5 cut(s) 425, 742, 895, 921, 1093
FatI CATG 5 cut(s) 421, 738, 891, 917, 1089
FauNDI CATATG 2 cut(s) 338, 505
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 1 cut(s) 1017
Fnu4HI GCNGC 3 cut(s) 524, 777, 780
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 3 cut(s) 524, 777, 780
FspBI CTAG 4 cut(s) 333, 759, 842, 1058
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 524, 777, 780
GsaI CCCAGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 230
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 2 cut(s) 171, 981
HapII CCGG 3 cut(s) 87, 926, 975
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 5 cut(s) 425, 742, 895, 921, 1093
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 3 cut(s) 160, 277, 634
HindII GTYRAC 3 cut(s) 160, 277, 634
HindIII AAGCTT 1 cut(s) 397
HinfI GANTC 3 cut(s) 117, 785, 793
HpaI GTTAAC 1 cut(s) 277
HpaII CCGG 3 cut(s) 87, 926, 975
HphI GGTGA 2 cut(s) 915, 942
Hpy166II GTNNAC 7 cut(s) 160, 277, 634, 727, 872, 923, 1018
Hpy188I TCNGA 2 cut(s) 366, 628
Hpy188III TCNNGA 5 cut(s) 100, 494, 584, 878, 909
Hpy8I GTNNAC 7 cut(s) 160, 277, 634, 727, 872, 923, 1018
HpyAV CCTTC 1 cut(s) 1095
HpyCH4III ACNGT 5 cut(s) 143, 274, 550, 569, 902
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 2 cut(s) 383, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 485
HpySE526I ACGT 1 cut(s) 597
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 5 cut(s) 425, 742, 895, 921, 1093
HspAI GCGC 1 cut(s) 90
KasI GGCGCC 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 361
KspAI GTTAAC 1 cut(s) 277
Kzo9I GATC 8 cut(s) 361, 366, 427, 508, 539, 642, 650, 685
LguI GCTCTTC 1 cut(s) 447
LmnI GCTCC 4 cut(s) 249, 573, 976, 1061
Lsp1109I GCAGC 2 cut(s) 766, 788
LweI GCATC 2 cut(s) 490, 755
MaeI CTAG 4 cut(s) 333, 759, 842, 1058
MaeII ACGT 1 cut(s) 597
MaeIII GTNAC 3 cut(s) 143, 563, 896
MalI GATC 8 cut(s) 363, 368, 429, 510, 541, 644, 652, 687
MboI GATC 8 cut(s) 361, 366, 427, 508, 539, 642, 650, 685
MboII GAAGA 7 cut(s) 112, 145, 368, 434, 741, 1002, 1073
MflI RGATCY 2 cut(s) 366, 650
MhlI GDGCHC 1 cut(s) 246
MlsI TGGCCA 1 cut(s) 171
MluCI AATT 8 cut(s) 177, 351, 390, 513, 543, 603, 659, 996
MluNI TGGCCA 1 cut(s) 171
Mly113I GGCGCC 1 cut(s) 90
MnlI CCTC 8 cut(s) 94, 295, 799, 807, 812, 849, 958, 1018
Mox20I TGGCCA 1 cut(s) 171
Mph1103I ATGCAT 1 cut(s) 505
MscI TGGCCA 1 cut(s) 171
MseI TTAA 3 cut(s) 219, 276, 1102
Msp20I TGGCCA 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 779
MspI CCGG 3 cut(s) 87, 926, 975
MspR9I CCNGG 2 cut(s) 954, 975
MvaI CCWGG 1 cut(s) 954
MwoI GCNNNNNNNGC 1 cut(s) 50
NarI GGCGCC 1 cut(s) 90
NciI CCSGG 1 cut(s) 975
NdeI CATATG 2 cut(s) 338, 505
NdeII GATC 8 cut(s) 361, 366, 427, 508, 539, 642, 650, 685
NlaIII CATG 5 cut(s) 425, 742, 895, 921, 1093
NlaIV GGNNCC 4 cut(s) 91, 522, 699, 1063
NsiI ATGCAT 1 cut(s) 505
PaqCI CACCTGC 1 cut(s) 976
PciSI GCTCTTC 1 cut(s) 447
PcsI WCGNNNNNNNCGW 1 cut(s) 594
PfeI GAWTC 3 cut(s) 117, 785, 793
PkrI GCNGC 3 cut(s) 525, 778, 781
PluTI GGCGCC 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 952
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 1 cut(s) 952
PspN4I GGNNCC 4 cut(s) 91, 522, 699, 1063
PspPI GGNCC 3 cut(s) 267, 836, 980
PstNI CAGNNNCTG 1 cut(s) 782
PsuI RGATCY 2 cut(s) 366, 650
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 3 cut(s) 416, 600, 728
RsaNI GTAC 3 cut(s) 415, 599, 727
SacI GAGCTC 1 cut(s) 246
SapI GCTCTTC 1 cut(s) 447
SaqAI TTAA 3 cut(s) 219, 276, 1102
SatI GCNGC 3 cut(s) 524, 777, 780
Sau3AI GATC 8 cut(s) 361, 366, 427, 508, 539, 642, 650, 685
Sau96I GGNCC 3 cut(s) 267, 836, 980
ScrFI CCNGG 2 cut(s) 954, 975
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 2 cut(s) 490, 755
SfcI CTRYAG 1 cut(s) 1040
SfoI GGCGCC 1 cut(s) 91
SinI GGWCC 2 cut(s) 267, 836
SpeI ACTAGT 1 cut(s) 758
Sse9I AATT 8 cut(s) 177, 351, 390, 513, 543, 603, 659, 996
SsiI CCGC 1 cut(s) 524
SspDI GGCGCC 1 cut(s) 89
SspI AATATT 2 cut(s) 60, 289
SspMI CTAG 4 cut(s) 333, 759, 842, 1058
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 2 cut(s) 952, 973
StyI CCWWGG 1 cut(s) 1057
TaaI ACNGT 5 cut(s) 143, 274, 550, 569, 902
TaiI ACGT 1 cut(s) 600
TaqI TCGA 8 cut(s) 187, 349, 387, 426, 511, 665, 688, 791
TasI AATT 8 cut(s) 177, 351, 390, 513, 543, 603, 659, 996
TatI WGTACW 2 cut(s) 414, 726
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 3 cut(s) 117, 785, 793
Tru1I TTAA 3 cut(s) 219, 276, 1102
Tru9I TTAA 3 cut(s) 219, 276, 1102
TscAI CASTG 1 cut(s) 838
TseI GCWGC 2 cut(s) 776, 779
TspDTI ATGAA 3 cut(s) 364, 831, 989
TspRI CASTG 1 cut(s) 838
VpaK11BI GGWCC 2 cut(s) 267, 836
XapI RAATTY 3 cut(s) 177, 390, 513
XmaJI CCTAGG 1 cut(s) 1057
XmiI GTMKAC 1 cut(s) 1017
XspI CTAG 4 cut(s) 333, 759, 842, 1058
Zsp2I ATGCAT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.