Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001437

Physical Location & Seq

Genomic Coordinates Forward (+)

526132 .. 526408

Gene Structure 277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15825

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCTAATACCCCTGTTCCAGTATTCCTAATCAACCTTATAGCTCTGTCAGCTTCAATATTATTCTCTGTCATAATCAATCCCTCCGGCGCCGTGTTCGTGAGCAACAGCGTAAGAATCTTCCCAGCCTTGAAGAAAAACTGTTACACCATCCCAGTTGACAAAGCTGGCCAAAGAATTCTGGTTCGAGCAAGTTTCTTTTATTGGGGCTTTTATGTTAATAAGACTTCTCCCACCTTTGAGCTCCAGTTTGACGGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

87

Amino Acids

9.65

Weight (kDa)

9.65

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	36 - 87	9.8e-09	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24485 AT1G24485 AT1G24485 AT1G24485 AT3G46240 AT3G46260 AT3G46270 AT3G46270 AT3G46280
fragaria_vesca	FvH4_3g34600 FvH4_3g34600 FvH4_3g34610 FvH4_3g34610 FvH4_7g34060 FvH4_7g34060
malus_domestica	MD06G1235100.v1.1 MD11G1117200.v1.1
prunus_persica	Prupe.2G327000_v2.0.a1 Prupe.2G327000_v2.0.a1 Prupe.5G239900_v2.0.a1 Prupe.6G087500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0062321 RchiOBHm_Chr7g0177641 RchiOBHm_Chr7g0177651
rosa_laevigata	RLG00000005517 RLG00000026048 RLG00000035549
rosa_multiflora	Rmu_sc0006298.1_g000001 Rmu_ssc0000236.1_g000001 Rmu_ssc0000409.1_g000030 Rmu_ssc0000409.1_g000031
rosa_roxburghii	Rroxscaffold_1G00018380 Rroxscaffold_3G00275690 Rroxscaffold_3G00275700 Rroxscaffold_4G00276770
rosa_rugosa	Rorug01G0446900 Rorug05G0348200 Rorug05G0348300 Rorug06G0408300
rosa_samantha	Rh1CG442900 Rh5AG408300 Rh5BG422000 Rh5CG446000 Rh5DG437000 Rh7AG007700 Rh7BG007500 Rh7BG007600 Rh7CG008100 Rh7DG007800
rosa_wichuraiana	Rw0G008230 Rw5G038470 Rw7G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	90
AgsI	TTSAA	2 cut(s)	57, 133
AluBI	AGCT	4 cut(s)	44, 53, 167, 244
AluI	AGCT	4 cut(s)	44, 53, 167, 244
Alw21I	GWGCWC	1 cut(s)	246
AoxI	GGCC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	177
AspLEI	GCGC	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	90
Bse1I	ACTGG	3 cut(s)	20, 155, 247
BseGI	GGATG	1 cut(s)	150
BseNI	ACTGG	3 cut(s)	20, 155, 247
BseYI	CCCAGC	1 cut(s)	124
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	87
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	246
BspANI	GGCC	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	89
BsrI	ACTGG	3 cut(s)	20, 155, 247
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	1 cut(s)	92
CviJI	RGCY	8 cut(s)	5, 44, 53, 128, 167, 171, 210, 244
CviKI_1	RGCY	8 cut(s)	5, 44, 53, 128, 167, 171, 210, 244
DinI	GGCGCC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	169
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaiI	YATR	3 cut(s)	41, 74, 216
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	246
GlaI	GCGC	1 cut(s)	91
GsaI	CCCAGC	1 cut(s)	128
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	90
HspAI	GCGC	1 cut(s)	90
KasI	GGCGCC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	8 cut(s)	27, 33, 100, 138, 153, 167, 168, 260
MaeIII	GTNAC	1 cut(s)	143
MboII	GAAGA	2 cut(s)	112, 145
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	171
Mly113I	GGCGCC	1 cut(s)	90
MnlI	CCTC	1 cut(s)	94
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	171
MspI	CCGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	50
NarI	GGCGCC	1 cut(s)	90
NlaIV	GGNNCC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	117
PluTI	GGCGCC	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	91
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	6 cut(s)	39, 46, 55, 169, 239, 246
SfoI	GGCGCC	1 cut(s)	91
Sse9I	AATT	1 cut(s)	177
SspDI	GGCGCC	1 cut(s)	89
SspI	AATATT	1 cut(s)	60
SstI	GAGCTC	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	187
TasI	AATT	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
XapI	RAATTY	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.