RchiOBHm_Chr5g0062321

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001437
Physical Location & Seq
Forward (+)
67805813 .. 67808000
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33860

Sequence Viewer

Length: 1458 bp
ATGAGCACTTTGAGAGTGTTTACAACCAGGAAGAAAAACTGTTACTCCATTGATGCAGAAAAGGGAGCTCAGTTTCTTGTGCGTGGAAGTTTCTACTACGGAAACTATGACAAAAAATCAGCTCCTCCTTCCTTTGATGTTCTTTTGGATGGGAATTTTTTTGACACAATTCAGACTACAGCTGAGGATGTTATTTATTTTGAAGCTATATATGTCGCAAGAAGCGGCTCTATACAGCTATGTCTTGCTCAATCTAAGCCTAACCAGTTTCCATTTATATCCGCGATTGAGATCCGGGGCCTGGATCCAACAATGTACTCTCATTTTGAGTCGAACTATATGATGGTAAATACAAGGAGGGTTGCTTTTGGTGCAACTAAATCTATAAGGTATCCAGATGATGGTTATGATCGTTATTGGGATCCATCAGGGGATGTCACCGGCATACTGAAGGTCACAAGTGATGCACTAGGAATTGATGGCATTGTGGAAGATCAGCCTCCAAAACTAGCTATGCAAACTGCAATAACCACCTCAAAAACATCACAACCATTGGGTATAATTGGCAATGGTCTTCCAAGTGCTGAAGTCCCCATTTACATCACCATGTTCTTCTCTGAAGTGAATCTACTTGATTCGTCGACTGATGTCAGATCCTTTCAGATTTTCATTGATGACAAGAATCCTTCAGATCCCATCATTCCCATCTATGGAGGTGTGACAGAAATGTACATTGCAAACAGGACCGGCTCTTCGAAGACCTCAATTTCTCTGGTGGCCACCACTGATTCGACGCTGCCTCCTCTGATCAATGCCATGGAAGTTTACTACCTTCTAGGGCCACTAACAGAGGGAACAAATAGCAAAGATGTTGAAGGGTTGGCTGCATTGCAAGGAAAGTTCAGTATTCTACAGGAATGGACTGGAGACCCTTGCCTCCCATCTCCATATACATGGGACTGGGTCAATTGTACTACTGATGACACACCGCGAGTAACAGCACTGTATTTGAATGGCTATGATCTATCTGGGCAACTTCCAGACTTCAGTTCCATGGATGCTCTTGTCACAATAGACATGCACAACAACAGCCTGAGTGGAGCAATTCCTAGTTTTCTTGGCACCTTGCCCAATCTAAAAGAACTGAACTTAGGAGACAATAAACTGAGTGGACCAGTACCCTCCACAATTTCAAAGAATACCAAGCTGAAGTTAGAGGATTCTGGCAATCCTAATCTATGTGCCTCTGGCGAGTCCTGTAAGACAATTGCTAGAAATGATAGCCCCTCTTCATCAGGCAGCAGTGGCACTAAGAAGAAAAGCAGCAAACTACCATTAATTATTGGAATAGCAATTCCAGCTTTTGCGGCGTTCTGGGTTATTGTGGTAGTGTGTGTTTGTGTAGTAACTTCAAATAAGAGAAGAAAAGCAGCCGTCGGAGCAATCGGCACAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

485

Amino Acids

52.52

Weight (kDa)

5.05

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 2 - 277 2e-68 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1121
AccB7I CCANNNNNTGG 1 cut(s) 401
AccI GTMKAC 1 cut(s) 641
AccII CGCG 2 cut(s) 284, 991
AciI CCGC 4 cut(s) 225, 282, 989, 1367
AclWI GGATC 7 cut(s) 286, 299, 312, 416, 429, 648, 686
AcoI YGGCCR 1 cut(s) 777
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 6 cut(s) 470, 606, 639, 672, 1030, 1229
AfaI GTAC 4 cut(s) 317, 731, 973, 1179
AfiI CCNNNNNNNGG 3 cut(s) 301, 401, 710
AgsI TTSAA 5 cut(s) 203, 875, 1012, 1194, 1413
AjnI CCWGG 2 cut(s) 26, 300
AluBI AGCT 8 cut(s) 68, 122, 182, 206, 238, 512, 1207, 1361
AluI AGCT 8 cut(s) 68, 122, 182, 206, 238, 512, 1207, 1361
Alw21I GWGCWC 2 cut(s) 8, 70
Alw26I GTCTC 2 cut(s) 921, 1149
AlwI GGATC 7 cut(s) 286, 299, 312, 416, 429, 648, 686
AoxI GGCC 3 cut(s) 298, 777, 839
ApeKI GCWGC 5 cut(s) 796, 884, 1299, 1323, 1430
ApoI RAATTY 1 cut(s) 154
ArsI GACNNNNNNTTYG 2 cut(s) 736, 768
AseI ATTAAT 1 cut(s) 1337
AspS9I GGNCC 4 cut(s) 298, 744, 839, 1172
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 430, 595
AsuII TTCGAA 1 cut(s) 755
AvaII GGWCC 2 cut(s) 744, 1172
BalI TGGCCA 1 cut(s) 779
BamHI GGATCC 2 cut(s) 304, 421
BanI GGYRCC 1 cut(s) 1121
BanII GRGCYC 1 cut(s) 70
BarI GAAGNNNNNNTAC 2 cut(s) 612, 644
BbsI GAAGAC 2 cut(s) 566, 764
Bbv12I GWGCWC 2 cut(s) 8, 70
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 5 cut(s) 783, 871, 1311, 1335, 1442
BccI CCATC 8 cut(s) 143, 337, 395, 433, 473, 704, 713, 949
BceAI ACGGC 1 cut(s) 1418
BciT130I CCWGG 2 cut(s) 28, 302
BciVI GTATCC 1 cut(s) 402
BclI TGATCA 1 cut(s) 807
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 921, 1149
BfaI CTAG 5 cut(s) 470, 509, 836, 1110, 1272
BfmI CTRYAG 2 cut(s) 177, 911
BfuI GTATCC 1 cut(s) 402
BisI GCNGC 7 cut(s) 226, 797, 885, 1300, 1324, 1368, 1431
BlsI GCNGC 7 cut(s) 227, 798, 886, 1301, 1325, 1369, 1432
Bme1390I CCNGG 3 cut(s) 28, 296, 302
Bme18I GGWCC 2 cut(s) 744, 1172
BmgT120I GGNCC 4 cut(s) 298, 744, 839, 1172
BmiI GGNNCC 4 cut(s) 299, 306, 423, 1123
BmrFI CCNGG 3 cut(s) 28, 296, 302
BmrI ACTGGG 1 cut(s) 970
BmsI GCATC 3 cut(s) 43, 454, 1048
BmuI ACTGGG 1 cut(s) 970
BoxI GACNNNNGTC 1 cut(s) 647
BpiI GAAGAC 2 cut(s) 566, 764
BpmI CTGGAG 1 cut(s) 945
Bpu10I CCTNAGC 1 cut(s) 183
Bpu14I TTCGAA 1 cut(s) 755
BpuMI CCSGG 1 cut(s) 296
BsaBI GATNNNNATC 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 921
BsaJI CCNNGG 3 cut(s) 295, 816, 1053
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 784, 814
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 401, 710
Bse118I RCCGGY 2 cut(s) 440, 746
Bse1I ACTGG 4 cut(s) 265, 928, 965, 1175
Bse3DI GCAATG 3 cut(s) 574, 732, 887
Bse8I GATNNNNATC 1 cut(s) 290
BseBI CCWGG 2 cut(s) 28, 302
BseDI CCNNGG 3 cut(s) 295, 816, 1053
BseGI GGATG 4 cut(s) 154, 193, 439, 1063
BseJI GATNNNNATC 1 cut(s) 290
BseLI CCNNNNNNNGG 3 cut(s) 301, 401, 710
BseMI GCAATG 3 cut(s) 574, 732, 887
BseMII CTCAG 4 cut(s) 83, 174, 1085, 1157
BseNI ACTGG 4 cut(s) 265, 928, 965, 1175
BseRI GAGGAG 2 cut(s) 114, 792
BseXI GCAGC 5 cut(s) 783, 871, 1311, 1335, 1442
Bsh1236I CGCG 2 cut(s) 284, 991
BshFI GGCC 3 cut(s) 300, 779, 841
BshNI GGYRCC 1 cut(s) 1121
BsiHKAI GWGCWC 2 cut(s) 8, 70
BsiSI CCGG 3 cut(s) 295, 441, 747
BslFI GGGAC 2 cut(s) 575, 971
BslI CCNNNNNNNGG 3 cut(s) 301, 401, 710
BsmAI GTCTC 2 cut(s) 921, 1149
BsmFI GGGAC 2 cut(s) 575, 971
BsnI GGCC 3 cut(s) 300, 779, 841
Bso31I GGTCTC 1 cut(s) 921
Bsp119I TTCGAA 1 cut(s) 755
Bsp1286I GDGCHC 2 cut(s) 8, 70
Bsp1407I TGTACA 1 cut(s) 729
Bsp143I GATC 9 cut(s) 291, 304, 409, 421, 493, 653, 691, 807, 1021
Bsp19I CCATGG 2 cut(s) 816, 1053
BspACI CCGC 4 cut(s) 225, 282, 989, 1367
BspANI GGCC 3 cut(s) 300, 779, 841
BspCNI CTCAG 4 cut(s) 82, 175, 1086, 1158
BspFNI CGCG 2 cut(s) 284, 991
BspLI GGNNCC 4 cut(s) 299, 306, 423, 1123
BspPI GGATC 7 cut(s) 286, 299, 312, 416, 429, 648, 686
BspQI GCTCTTC 1 cut(s) 757
BspT104I TTCGAA 1 cut(s) 755
BspT107I GGYRCC 1 cut(s) 1121
BspTNI GGTCTC 1 cut(s) 921
BsrDI GCAATG 3 cut(s) 574, 732, 887
BsrFI RCCGGY 2 cut(s) 440, 746
BsrGI TGTACA 1 cut(s) 729
BsrI ACTGG 4 cut(s) 265, 928, 965, 1175
BssAI RCCGGY 2 cut(s) 440, 746
BssECI CCNNGG 3 cut(s) 295, 816, 1053
BssMI GATC 9 cut(s) 291, 304, 409, 421, 493, 653, 691, 807, 1021
BssT1I CCWWGG 2 cut(s) 816, 1053
Bst2UI CCWGG 2 cut(s) 28, 302
Bst4CI ACNGT 2 cut(s) 41, 1005
Bst6I CTCTTC 2 cut(s) 757, 1294
BstAUI TGTACA 1 cut(s) 729
BstBI TTCGAA 1 cut(s) 755
BstDEI CTNAG 7 cut(s) 69, 183, 255, 1094, 1150, 1166, 1311
BstDSI CCRYGG 2 cut(s) 816, 1053
BstF5I GGATG 4 cut(s) 154, 193, 439, 1063
BstFNI CGCG 2 cut(s) 284, 991
BstKTI GATC 9 cut(s) 294, 307, 412, 424, 496, 656, 694, 810, 1024
BstMAI GTCTC 2 cut(s) 921, 1149
BstMBI GATC 9 cut(s) 291, 304, 409, 421, 493, 653, 691, 807, 1021
BstMWI GCNNNNNNNGC 5 cut(s) 371, 1305, 1358, 1367, 1439
BstNI CCWGG 2 cut(s) 28, 302
BstNSI RCATGY 1 cut(s) 1081
BstPAI GACNNNNGTC 1 cut(s) 647
BstSCI CCNGG 3 cut(s) 26, 294, 300
BstSFI CTRYAG 2 cut(s) 177, 911
BstUI CGCG 2 cut(s) 284, 991
BstV1I GCAGC 5 cut(s) 783, 871, 1311, 1335, 1442
BstV2I GAAGAC 2 cut(s) 566, 764
BstX2I RGATCY 5 cut(s) 291, 304, 421, 653, 691
BstXI CCANNNNNNTGG 1 cut(s) 954
BstYI RGATCY 5 cut(s) 291, 304, 421, 653, 691
BsuI GTATCC 1 cut(s) 402
BsuRI GGCC 3 cut(s) 300, 779, 841
BtgI CCRYGG 2 cut(s) 816, 1053
BtsCI GGATG 4 cut(s) 154, 193, 439, 1063
BtsI GCAGTG 1 cut(s) 1309
BtsIMutI CAGTG 3 cut(s) 783, 1001, 1309
Cfr10I RCCGGY 2 cut(s) 440, 746
Cfr13I GGNCC 4 cut(s) 298, 744, 839, 1172
CseI GACGC 1 cut(s) 802
Csp6I GTAC 4 cut(s) 316, 730, 972, 1178
CviAII CATG 5 cut(s) 607, 817, 954, 1054, 1078
CviQI GTAC 4 cut(s) 316, 730, 972, 1178
DdeI CTNAG 7 cut(s) 69, 183, 255, 1094, 1150, 1166, 1311
DpnI GATC 9 cut(s) 293, 306, 411, 423, 495, 655, 693, 809, 1023
DpnII GATC 9 cut(s) 291, 304, 409, 421, 493, 653, 691, 807, 1021
EaeI YGGCCR 1 cut(s) 777
Eam1104I CTCTTC 2 cut(s) 757, 1294
EarI CTCTTC 2 cut(s) 757, 1294
Ecl136II GAGCTC 1 cut(s) 68
Eco130I CCWWGG 2 cut(s) 816, 1053
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 921
Eco47I GGWCC 2 cut(s) 744, 1172
Eco53kI GAGCTC 1 cut(s) 68
Eco57I CTGAAG 6 cut(s) 470, 606, 639, 672, 1030, 1229
EcoICRI GAGCTC 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 2 cut(s) 26, 300
EcoT14I CCWWGG 2 cut(s) 816, 1053
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 2 cut(s) 816, 1053
FaeI CATG 5 cut(s) 610, 820, 957, 1057, 1081
FaqI GGGAC 2 cut(s) 575, 971
FatI CATG 5 cut(s) 606, 816, 953, 1053, 1077
FbaI TGATCA 1 cut(s) 807
FblI GTMKAC 1 cut(s) 641
Fnu4HI GCNGC 7 cut(s) 226, 797, 885, 1300, 1324, 1368, 1431
FokI GGATG 4 cut(s) 161, 200, 446, 1070
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 7 cut(s) 226, 797, 885, 1300, 1324, 1368, 1431
FspBI CTAG 5 cut(s) 470, 509, 836, 1110, 1272
GluI GCNGC 7 cut(s) 226, 797, 885, 1300, 1324, 1368, 1431
GsuI CTGGAG 1 cut(s) 945
HaeIII GGCC 3 cut(s) 300, 779, 841
HapII CCGG 3 cut(s) 295, 441, 747
HgaI GACGC 1 cut(s) 802
Hin1II CATG 5 cut(s) 610, 820, 957, 1057, 1081
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HinfI GANTC 7 cut(s) 329, 625, 635, 682, 788, 1220, 1253
HpaII CCGG 3 cut(s) 295, 441, 747
HphI GGTGA 2 cut(s) 430, 595
Hpy166II GTNNAC 4 cut(s) 21, 642, 826, 1172
Hpy188I TCNGA 7 cut(s) 174, 619, 653, 663, 691, 807, 1439
Hpy188III TCNNGA 2 cut(s) 395, 1040
Hpy8I GTNNAC 4 cut(s) 21, 642, 826, 1172
Hpy99I CGWCG 3 cut(s) 643, 796, 1439
HpyAV CCTTC 5 cut(s) 138, 445, 696, 842, 869
HpyCH4III ACNGT 2 cut(s) 41, 1005
HpyCH4V TGCA 9 cut(s) 56, 374, 467, 517, 524, 737, 887, 892, 1081
HpyF10VI GCNNNNNNNGC 5 cut(s) 371, 1305, 1358, 1367, 1439
HpyF3I CTNAG 7 cut(s) 69, 183, 255, 1094, 1150, 1166, 1311
Hsp92II CATG 5 cut(s) 610, 820, 957, 1057, 1081
Ksp22I TGATCA 1 cut(s) 807
Kzo9I GATC 9 cut(s) 291, 304, 409, 421, 493, 653, 691, 807, 1021
LguI GCTCTTC 1 cut(s) 757
LmnI GCTCC 4 cut(s) 65, 127, 1100, 1439
Lsp1109I GCAGC 5 cut(s) 783, 871, 1311, 1335, 1442
LweI GCATC 3 cut(s) 43, 454, 1048
MaeI CTAG 5 cut(s) 470, 509, 836, 1110, 1272
MaeIII GTNAC 7 cut(s) 41, 436, 454, 718, 994, 1066, 1405
MalI GATC 9 cut(s) 293, 306, 411, 423, 495, 655, 693, 809, 1023
MboI GATC 9 cut(s) 291, 304, 409, 421, 493, 653, 691, 807, 1021
MboII GAAGA 9 cut(s) 43, 503, 566, 604, 744, 769, 1281, 1327, 1434
MfeI CAATTG 2 cut(s) 967, 1266
MflI RGATCY 5 cut(s) 291, 304, 421, 653, 691
MhlI GDGCHC 2 cut(s) 8, 70
MlsI TGGCCA 1 cut(s) 779
MluNI TGGCCA 1 cut(s) 779
MlyI GAGTC 2 cut(s) 338, 1262
MmeI TCCRAC 2 cut(s) 332, 1417
Mox20I TGGCCA 1 cut(s) 779
MscI TGGCCA 1 cut(s) 779
MseI TTAA 1 cut(s) 1337
MslI CAYNNNNRTG 2 cut(s) 605, 952
Msp20I TGGCCA 1 cut(s) 779
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 3 cut(s) 295, 441, 747
MspR9I CCNGG 3 cut(s) 28, 296, 302
MunI CAATTG 2 cut(s) 967, 1266
MvaI CCWGG 2 cut(s) 28, 302
MvnI CGCG 2 cut(s) 284, 991
MwoI GCNNNNNNNGC 5 cut(s) 371, 1305, 1358, 1367, 1439
NciI CCSGG 1 cut(s) 296
NcoI CCATGG 2 cut(s) 816, 1053
NdeII GATC 9 cut(s) 291, 304, 409, 421, 493, 653, 691, 807, 1021
NlaIII CATG 5 cut(s) 610, 820, 957, 1057, 1081
NlaIV GGNNCC 4 cut(s) 299, 306, 423, 1123
NmuCI GTSAC 4 cut(s) 436, 454, 718, 1066
NspI RCATGY 1 cut(s) 1081
NspV TTCGAA 1 cut(s) 755
PciSI GCTCTTC 1 cut(s) 757
PfeI GAWTC 5 cut(s) 625, 635, 682, 788, 1220
PflFI GACNNNGTC 1 cut(s) 962
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 7 cut(s) 227, 798, 886, 1301, 1325, 1369, 1432
PleI GAGTC 2 cut(s) 337, 1261
PpsI GAGTC 2 cut(s) 337, 1261
PshAI GACNNNNGTC 1 cut(s) 647
PshBI ATTAAT 1 cut(s) 1337
Psp124BI GAGCTC 1 cut(s) 70
Psp6I CCWGG 2 cut(s) 26, 300
PspGI CCWGG 2 cut(s) 26, 300
PspN4I GGNNCC 4 cut(s) 299, 306, 423, 1123
PspPI GGNCC 4 cut(s) 298, 744, 839, 1172
PsuI RGATCY 5 cut(s) 291, 304, 421, 653, 691
PsyI GACNNNGTC 1 cut(s) 962
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 4 cut(s) 317, 731, 973, 1179
RsaNI GTAC 4 cut(s) 316, 730, 972, 1178
RseI CAYNNNNRTG 2 cut(s) 605, 952
SacI GAGCTC 1 cut(s) 70
SalI GTCGAC 1 cut(s) 640
SapI GCTCTTC 1 cut(s) 757
SaqAI TTAA 1 cut(s) 1337
SatI GCNGC 7 cut(s) 226, 797, 885, 1300, 1324, 1368, 1431
Sau3AI GATC 9 cut(s) 291, 304, 409, 421, 493, 653, 691, 807, 1021
Sau96I GGNCC 4 cut(s) 298, 744, 839, 1172
SchI GAGTC 2 cut(s) 338, 1262
ScrFI CCNGG 3 cut(s) 28, 296, 302
SduI GDGCHC 2 cut(s) 8, 70
SfaNI GCATC 3 cut(s) 43, 454, 1048
SfcI CTRYAG 2 cut(s) 177, 911
SfuI TTCGAA 1 cut(s) 755
SinI GGWCC 2 cut(s) 744, 1172
SmiMI CAYNNNNRTG 2 cut(s) 605, 952
SsiI CCGC 4 cut(s) 225, 282, 989, 1367
SspMI CTAG 5 cut(s) 470, 509, 836, 1110, 1272
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 3 cut(s) 26, 294, 300
StyI CCWWGG 2 cut(s) 816, 1053
TaaI ACNGT 2 cut(s) 41, 1005
TaqI TCGA 4 cut(s) 332, 641, 755, 791
TatI WGTACW 3 cut(s) 315, 729, 971
TauI GCSGC 2 cut(s) 228, 1370
TfiI GAWTC 5 cut(s) 625, 635, 682, 788, 1220
Tru1I TTAA 1 cut(s) 1337
Tru9I TTAA 1 cut(s) 1337
TscAI CASTG 3 cut(s) 790, 1008, 1309
TseFI GTSAC 4 cut(s) 436, 454, 718, 1066
TseI GCWGC 5 cut(s) 796, 884, 1299, 1323, 1430
Tsp45I GTSAC 4 cut(s) 436, 454, 718, 1066
TspDTI ATGAA 2 cut(s) 658, 1281
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 3 cut(s) 790, 1008, 1309
Tth111I GACNNNGTC 1 cut(s) 962
Van91I CCANNNNNTGG 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 744, 1172
VspI ATTAAT 1 cut(s) 1337
XapI RAATTY 1 cut(s) 154
XceI RCATGY 1 cut(s) 1081
XmiI GTMKAC 1 cut(s) 641
XspI CTAG 5 cut(s) 470, 509, 836, 1110, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.