Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001437

Physical Location & Seq

Genomic Coordinates Forward (+)

528664 .. 529661

Gene Structure 998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G000640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTAATACCCCTGTTCCAGTATTCCTAATCAACCTTATAGCTCTGTCAGCTTCAATATTATTCTCTGTCATAATCAATCCCTCCGGCGCCGTGTTCGTGACCAACAGCGTAAGAATCTTCTCAGCCTTGAAGAAAAACTGTTACACCATCCCAGTTGACAAAGCTGGCCAAAGAATTCTGACTTCTCCCACCTTTGAGCTCCAGTTTGACGGCAACTACTGGACCACCGTTAACAAACCCAATATTGTTTCTTATGAGGCAATCTATGTTGCCAAGCAGAATACGACTAGCATATGTCTTGCTCGAATTGAAGATGATCAGATCCCAAGTATGCTCTTCGATCTGTTGGCAAATAGGTTTTATGATGGTGGAAATCAAACTCTCAGGTATCCAGATGATGCATATGATCGAATTTGGGTGCCGCAGATTGGTAGCTGTGGGAGCAGGCTTCCAGACGATAAGAACGTACCAATTTACATCACAACTTACTTTTCTGAAGTTGACAAAACGATCAAAAGATCCCTACAATTTTCGATAGACAGCAAGCCTTATGATCGACCTGTGGTTCCACCTTTTGGAAGCGTAGCCGTAGTGTACATTACCAACATGACGGCATCTTCTAACACTATTTATACCATCACTGGACCTCTAGCACAAGCAACCAACTCTAAAGATGGTACATCGCTAATTCGTTCCAACTGCGGCATATGTAACTGCATAATGGTTTATGGTATGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

247

Amino Acids

27.32

Weight (kDa)

7.49

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	35 - 108	7e-08	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24485 AT1G24485 AT1G24485 AT1G24485 AT3G46240 AT3G46260 AT3G46270 AT3G46270 AT3G46280
fragaria_vesca	FvH4_3g34600 FvH4_3g34600 FvH4_3g34610 FvH4_3g34610 FvH4_7g34060 FvH4_7g34060
malus_domestica	MD06G1235100.v1.1 MD11G1117200.v1.1
prunus_persica	Prupe.2G327000_v2.0.a1 Prupe.2G327000_v2.0.a1 Prupe.5G239900_v2.0.a1 Prupe.6G087500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0062321 RchiOBHm_Chr7g0177641 RchiOBHm_Chr7g0177651
rosa_laevigata	RLG00000005517 RLG00000026048 RLG00000035549
rosa_multiflora	Rmu_sc0006298.1_g000001 Rmu_ssc0000236.1_g000001 Rmu_ssc0000409.1_g000030 Rmu_ssc0000409.1_g000031
rosa_roxburghii	Rroxscaffold_1G00018380 Rroxscaffold_3G00275690 Rroxscaffold_3G00275700 Rroxscaffold_4G00276770
rosa_rugosa	Rorug01G0446900 Rorug05G0348200 Rorug05G0348300 Rorug06G0408300
rosa_samantha	Rh1CG442900 Rh5AG408300 Rh5BG422000 Rh5CG446000 Rh5DG437000 Rh7AG007700 Rh7BG007500 Rh7BG007600 Rh7CG008100 Rh7DG007800
rosa_wichuraiana	Rw0G008230 Rw5G038470 Rw7G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	89, 421
AccB7I	CCANNNNNTGG	1 cut(s)	578
AciI	CCGC	2 cut(s)	425, 705
AclWI	GGATC	2 cut(s)	319, 516
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	2 cut(s)	177, 414
AcuI	CTGAAG	1 cut(s)	519
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	3 cut(s)	471, 599, 682
AfiI	CCNNNNNNNGG	2 cut(s)	431, 578
AgsI	TTSAA	3 cut(s)	57, 133, 314
AluBI	AGCT	5 cut(s)	44, 53, 167, 202, 438
AluI	AGCT	5 cut(s)	44, 53, 167, 202, 438
Alw21I	GWGCWC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	319, 516
AoxI	GGCC	1 cut(s)	169
ApoI	RAATTY	2 cut(s)	177, 414
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	225, 647
AvaII	GGWCC	2 cut(s)	225, 647
BalI	TGGCCA	1 cut(s)	171
BanI	GGYRCC	2 cut(s)	89, 421
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	204
BccI	CCATC	4 cut(s)	158, 362, 647, 671
BceAI	ACGGC	4 cut(s)	77, 229, 575, 630
BciVI	GTATCC	1 cut(s)	402
BclI	TGATCA	1 cut(s)	319
BfaI	CTAG	2 cut(s)	291, 653
BfoI	RGCGCY	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	402
BisI	GCNGC	2 cut(s)	425, 706
BlsI	GCNGC	2 cut(s)	426, 707
Bme18I	GGWCC	2 cut(s)	225, 647
BmgT120I	GGNCC	2 cut(s)	225, 647
BmiI	GGNNCC	3 cut(s)	91, 423, 570
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	391, 626
BmuI	ACTGGG	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 578
Bse1I	ACTGG	5 cut(s)	20, 155, 205, 227, 649
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	431, 578
BseMII	CTCAG	2 cut(s)	138, 400
BseNI	ACTGG	5 cut(s)	20, 155, 205, 227, 649
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	2 cut(s)	89, 421
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	431, 578
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp1407I	TGTACA	1 cut(s)	597
Bsp143I	GATC	7 cut(s)	319, 324, 343, 409, 513, 521, 556
BspACI	CCGC	2 cut(s)	425, 705
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	137, 399
BspLI	GGNNCC	3 cut(s)	91, 423, 570
BspPI	GGATC	2 cut(s)	319, 516
BspQI	GCTCTTC	1 cut(s)	344
BspT107I	GGYRCC	2 cut(s)	89, 421
BsrGI	TGTACA	1 cut(s)	597
BsrI	ACTGG	5 cut(s)	20, 155, 205, 227, 649
BssMI	GATC	7 cut(s)	319, 324, 343, 409, 513, 521, 556
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	143, 232
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	90
BstAUI	TGTACA	1 cut(s)	597
BstC8I	GCNNGC	3 cut(s)	169, 449, 548
BstDEI	CTNAG	2 cut(s)	124, 386
BstF5I	GGATG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	7 cut(s)	322, 327, 346, 412, 516, 524, 559
BstMBI	GATC	7 cut(s)	319, 324, 343, 409, 513, 521, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 444
BstX2I	RGATCY	2 cut(s)	324, 521
BstYI	RGATCY	2 cut(s)	324, 521
BsuI	GTATCC	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	642
Cac8I	GCNNGC	3 cut(s)	169, 449, 548
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	225, 647
Csp6I	GTAC	3 cut(s)	470, 598, 681
CviAII	CATG	1 cut(s)	610
CviQI	GTAC	3 cut(s)	470, 598, 681
DdeI	CTNAG	2 cut(s)	124, 386
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	7 cut(s)	321, 326, 345, 411, 515, 523, 558
DpnII	GATC	7 cut(s)	319, 324, 343, 409, 513, 521, 556
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	225, 647
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	519
EcoICRI	GAGCTC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	204
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	1 cut(s)	613
FatI	CATG	1 cut(s)	609
FauNDI	CATATG	3 cut(s)	296, 406, 710
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	425, 706
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	425, 706
FspBI	CTAG	2 cut(s)	291, 653
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	425, 706
GsuI	CTGGAG	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	613
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	3 cut(s)	160, 235, 505
HindII	GTYRAC	3 cut(s)	160, 235, 505
HinfI	GANTC	1 cut(s)	117
HpaI	GTTAAC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	87
Hpy166II	GTNNAC	4 cut(s)	160, 235, 505, 598
Hpy188I	TCNGA	3 cut(s)	183, 324, 499
Hpy188III	TCNNGA	3 cut(s)	100, 395, 455
Hpy8I	GTNNAC	4 cut(s)	160, 235, 505, 598
HpyCH4III	ACNGT	2 cut(s)	143, 232
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	2 cut(s)	404, 720
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 444
HpyF3I	CTNAG	2 cut(s)	124, 386
HpySE526I	ACGT	1 cut(s)	468
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	613
HspAI	GCGC	1 cut(s)	90
KasI	GGCGCC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	235
Kzo9I	GATC	7 cut(s)	319, 324, 343, 409, 513, 521, 556
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	2 cut(s)	207, 444
LweI	GCATC	2 cut(s)	391, 626
MaeI	CTAG	2 cut(s)	291, 653
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	3 cut(s)	100, 143, 713
MalI	GATC	7 cut(s)	321, 326, 345, 411, 515, 523, 558
MboI	GATC	7 cut(s)	319, 324, 343, 409, 513, 521, 556
MboII	GAAGA	5 cut(s)	112, 145, 326, 331, 612
MflI	RGATCY	2 cut(s)	324, 521
MhlI	GDGCHC	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	6 cut(s)	177, 309, 414, 474, 530, 690
MluNI	TGGCCA	1 cut(s)	171
Mly113I	GGCGCC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	723
MnlI	CCTC	3 cut(s)	94, 253, 660
Mox20I	TGGCCA	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	406
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	171
MspI	CCGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	50, 444
NarI	GGCGCC	1 cut(s)	90
NdeI	CATATG	3 cut(s)	296, 406, 710
NdeII	GATC	7 cut(s)	319, 324, 343, 409, 513, 521, 556
NlaIII	CATG	1 cut(s)	613
NlaIV	GGNNCC	3 cut(s)	91, 423, 570
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	117
PflMI	CCANNNNNTGG	1 cut(s)	578
PkrI	GCNGC	2 cut(s)	426, 707
PluTI	GGCGCC	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	204
PspN4I	GGNNCC	3 cut(s)	91, 423, 570
PspPI	GGNCC	2 cut(s)	225, 647
PsuI	RGATCY	2 cut(s)	324, 521
RsaI	GTAC	3 cut(s)	471, 599, 682
RsaNI	GTAC	3 cut(s)	470, 598, 681
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	425, 706
Sau3AI	GATC	7 cut(s)	319, 324, 343, 409, 513, 521, 556
Sau96I	GGNCC	2 cut(s)	225, 647
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	2 cut(s)	391, 626
SfoI	GGCGCC	1 cut(s)	91
SinI	GGWCC	2 cut(s)	225, 647
Sse9I	AATT	6 cut(s)	177, 309, 414, 474, 530, 690
SsiI	CCGC	2 cut(s)	425, 705
SspDI	GGCGCC	1 cut(s)	89
SspI	AATATT	2 cut(s)	60, 247
SspMI	CTAG	2 cut(s)	291, 653
SstI	GAGCTC	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	143, 232
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	5 cut(s)	307, 342, 412, 536, 559
TasI	AATT	6 cut(s)	177, 309, 414, 474, 530, 690
TatI	WGTACW	1 cut(s)	597
TauI	GCSGC	2 cut(s)	427, 708
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspRI	CASTG	1 cut(s)	649
Van91I	CCANNNNNTGG	1 cut(s)	578
VpaK11BI	GGWCC	2 cut(s)	225, 647
XapI	RAATTY	2 cut(s)	177, 414
XspI	CTAG	2 cut(s)	291, 653
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.