Rmu_sc0006298.1_g000001

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006298.1
OG0001437
Physical Location & Seq
Reverse (-)
1 .. 3029
3029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006298.1_g000001.1.cds

Sequence Viewer

Length: 1407 bp
atgttacgtacactatcaatatccttaaatttatttcttgtgacaaattcattgactgtaattatctctctatgtggggttttcaggtatccagatgatggttatgatcgttattgggatccatcaggggatgtcaccggcatactgaaggtcacaagtgatgcaccgggaattgatggcattgtggaagatcagcctccaaaactagctatgcaaactgcaataaccacctcaaaaacatcacaaccattgggtataattggcaatggtcttccaagtgctgaagtccccatttacatcaccatgttcttctctgaagtgaatctacttgattcgtcgactgacgtcagatcctttcagattttcattgatgacaagaatccttcagatcccatcattcccatctatggaggtgtgacagaaatgtacattgcaaacaggaccggctcttcgaagacctcaatttctctggtggccaccactgattcgacgctgcctcctctgatcaatgccatggaagtttactaccttctagggccactaacagagggaacaaatagcaaagatgttgggtgtgctccccaacctaggttcgaatcccgaagtaccggctcttcgaagacctcaatttctctggtggccaccactgattcgacgctgcctcctctgatcaatgccatggaagtttactaccttctagggccactaacagagggaacaaatagcaaagatgttgaagggttggctgcattgcaaggaaagttcagtattctacaggaatggactggagacccttgcctcccatctccatatacatgggactgggtcaattgtactactgatgacacaccgcgagtaacagcactgtatttgaatggctatggtctatctgggcaacttccagacttcagttccatggatgctcttgtcacaatagacatgcacaacaacagcctcagtggagcaattcctagttttcttggcaccttgcccaatctaaaagaactgaacttaggagacaataaactgagtggaccagtaccctccacaatttcaaagaataccaagctgaagttcgacaatgatagcccctcttcatcagacagcagtggcactaagaagaaaagcagcaaactaccattaattcttggaatagcaattccagcttttgcggcgttctgggttattgtggtagtgtgtgtttgtgtagtaacttcaaataagagaagaaaagcagccgtcggagcaatcggcacaggacaaattggtgtggccaacgtgcctaatggcgctcaacaaggggtgcaaatggcgggtaaattcggagaagctgtgatgaaccagtacgagatcaacgttgaggagcaggcaaccccagattatcagcaacaagtaaccccagaacat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

469

Amino Acids

50.16

Weight (kDa)

4.62

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 983
AccB7I CCANNNNNTGG 1 cut(s) 98
AccI GTMKAC 1 cut(s) 338
AccII CGCG 1 cut(s) 853
AciI CCGC 3 cut(s) 851, 1172, 1313
AclI AACGTT 1 cut(s) 1356
AclWI GGATC 4 cut(s) 113, 126, 345, 383
AcoI YGGCCR 3 cut(s) 474, 639, 1272
AcsI RAATTY 3 cut(s) 28, 46, 1319
AcuI CTGAAG 6 cut(s) 167, 303, 336, 369, 892, 1091
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 6 cut(s) 10, 428, 607, 835, 1041, 1346
AfiI CCNNNNNNNGG 3 cut(s) 98, 407, 588
AgsI TTSAA 4 cut(s) 737, 874, 1056, 1218
AjuI GAANNNNNNNTTGG 2 cut(s) 1058, 1090
AluBI AGCT 4 cut(s) 209, 1069, 1166, 1331
AluI AGCT 4 cut(s) 209, 1069, 1166, 1331
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 2 cut(s) 783, 1011
AlwI GGATC 4 cut(s) 113, 126, 345, 383
AoxI GGCC 5 cut(s) 474, 536, 639, 701, 1272
ApeKI GCWGC 5 cut(s) 493, 658, 746, 1128, 1235
ApoI RAATTY 3 cut(s) 28, 46, 1319
ArsI GACNNNNNNTTYG 2 cut(s) 433, 465
AseI ATTAAT 1 cut(s) 1142
AspA2I CCTAGG 1 cut(s) 587
AspLEI GCGC 1 cut(s) 1292
AspS9I GGNCC 4 cut(s) 441, 536, 701, 1034
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 127, 292
AsuII TTCGAA 3 cut(s) 452, 594, 617
AvaII GGWCC 2 cut(s) 441, 1034
AvrII CCTAGG 1 cut(s) 587
BalI TGGCCA 3 cut(s) 476, 641, 1274
BamHI GGATCC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 983
BarI GAAGNNNNNNTAC 4 cut(s) 309, 341, 598, 630
BbsI GAAGAC 3 cut(s) 263, 461, 626
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 5 cut(s) 480, 645, 733, 1140, 1247
BccI CCATC 6 cut(s) 92, 130, 170, 401, 410, 811
BceAI ACGGC 1 cut(s) 1223
BciVI GTATCC 1 cut(s) 99
BclI TGATCA 2 cut(s) 504, 669
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 783, 1011
BfaI CTAG 5 cut(s) 206, 533, 588, 698, 972
BfmI CTRYAG 1 cut(s) 773
BfoI RGCGCY 1 cut(s) 1293
BfuI GTATCC 1 cut(s) 99
BisI GCNGC 6 cut(s) 494, 659, 747, 1129, 1173, 1236
BlnI CCTAGG 1 cut(s) 587
BlsI GCNGC 6 cut(s) 495, 660, 748, 1130, 1174, 1237
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 2 cut(s) 441, 1034
BmgT120I GGNCC 4 cut(s) 441, 536, 701, 1034
BmiI GGNNCC 2 cut(s) 120, 985
BmrFI CCNGG 1 cut(s) 168
BmrI ACTGGG 1 cut(s) 832
BmsI GCATC 2 cut(s) 151, 910
BmuI ACTGGG 1 cut(s) 832
BoxI GACNNNNGTC 1 cut(s) 344
BpiI GAAGAC 3 cut(s) 263, 461, 626
BpmI CTGGAG 1 cut(s) 807
Bpu14I TTCGAA 3 cut(s) 452, 594, 617
BpuMI CCSGG 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 783
BsaJI CCNNGG 4 cut(s) 513, 587, 678, 915
BsaXI ACNNNNNCTCC 6 cut(s) 481, 511, 646, 676, 1317, 1347
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 407, 588
Bse118I RCCGGY 3 cut(s) 137, 443, 608
Bse1I ACTGG 4 cut(s) 790, 827, 1037, 1342
Bse3DI GCAATG 3 cut(s) 271, 429, 749
BseDI CCNNGG 4 cut(s) 513, 587, 678, 915
BseGI GGATG 2 cut(s) 136, 925
BseLI CCNNNNNNNGG 3 cut(s) 98, 407, 588
BseMI GCAATG 3 cut(s) 271, 429, 749
BseMII CTCAG 2 cut(s) 970, 1019
BseNI ACTGG 4 cut(s) 790, 827, 1037, 1342
BseRI GAGGAG 3 cut(s) 489, 654, 1376
BseXI GCAGC 5 cut(s) 480, 645, 733, 1140, 1247
Bsh1236I CGCG 1 cut(s) 853
BshFI GGCC 5 cut(s) 476, 538, 641, 703, 1274
BshNI GGYRCC 1 cut(s) 983
BsiHKAI GWGCWC 1 cut(s) 580
BsiSI CCGG 4 cut(s) 138, 167, 444, 609
BslFI GGGAC 2 cut(s) 272, 833
BslI CCNNNNNNNGG 3 cut(s) 98, 407, 588
BsmAI GTCTC 2 cut(s) 783, 1011
BsmFI GGGAC 2 cut(s) 272, 833
BsnI GGCC 5 cut(s) 476, 538, 641, 703, 1274
Bso31I GGTCTC 1 cut(s) 783
Bsp119I TTCGAA 3 cut(s) 452, 594, 617
Bsp1286I GDGCHC 1 cut(s) 580
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 8 cut(s) 106, 118, 190, 350, 388, 504, 669, 1350
Bsp19I CCATGG 3 cut(s) 513, 678, 915
BspACI CCGC 3 cut(s) 851, 1172, 1313
BspANI GGCC 5 cut(s) 476, 538, 641, 703, 1274
BspCNI CTCAG 2 cut(s) 969, 1020
BspFNI CGCG 1 cut(s) 853
BspLI GGNNCC 2 cut(s) 120, 985
BspPI GGATC 4 cut(s) 113, 126, 345, 383
BspQI GCTCTTC 2 cut(s) 454, 619
BspT104I TTCGAA 3 cut(s) 452, 594, 617
BspT107I GGYRCC 1 cut(s) 983
BspTNI GGTCTC 1 cut(s) 783
BsrDI GCAATG 3 cut(s) 271, 429, 749
BsrFI RCCGGY 3 cut(s) 137, 443, 608
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 4 cut(s) 790, 827, 1037, 1342
BssAI RCCGGY 3 cut(s) 137, 443, 608
BssECI CCNNGG 4 cut(s) 513, 587, 678, 915
BssMI GATC 8 cut(s) 106, 118, 190, 350, 388, 504, 669, 1350
BssNI GRCGYC 1 cut(s) 345
BssT1I CCWWGG 4 cut(s) 513, 587, 678, 915
Bst4CI ACNGT 2 cut(s) 58, 867
Bst6I CTCTTC 3 cut(s) 454, 619, 1099
BstACI GRCGYC 1 cut(s) 345
BstAUI TGTACA 1 cut(s) 426
BstBAI YACGTR 1 cut(s) 8
BstBI TTCGAA 3 cut(s) 452, 594, 617
BstC8I GCNNGC 1 cut(s) 1368
BstDEI CTNAG 4 cut(s) 956, 1012, 1028, 1116
BstDSI CCRYGG 3 cut(s) 513, 678, 915
BstF5I GGATG 2 cut(s) 136, 925
BstFNI CGCG 1 cut(s) 853
BstH2I RGCGCY 1 cut(s) 1293
BstHHI GCGC 1 cut(s) 1292
BstKTI GATC 8 cut(s) 109, 121, 193, 353, 391, 507, 672, 1353
BstMAI GTCTC 2 cut(s) 783, 1011
BstMBI GATC 8 cut(s) 106, 118, 190, 350, 388, 504, 669, 1350
BstMWI GCNNNNNNNGC 3 cut(s) 1163, 1172, 1244
BstNSI RCATGY 1 cut(s) 943
BstPAI GACNNNNGTC 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 773
BstSNI TACGTA 1 cut(s) 8
BstUI CGCG 1 cut(s) 853
BstV1I GCAGC 5 cut(s) 480, 645, 733, 1140, 1247
BstV2I GAAGAC 3 cut(s) 263, 461, 626
BstX2I RGATCY 3 cut(s) 118, 350, 388
BstXI CCANNNNNNTGG 1 cut(s) 816
BstYI RGATCY 3 cut(s) 118, 350, 388
BsuI GTATCC 1 cut(s) 99
BsuRI GGCC 5 cut(s) 476, 538, 641, 703, 1274
BtgI CCRYGG 3 cut(s) 513, 678, 915
BtsCI GGATG 2 cut(s) 136, 925
BtsI GCAGTG 1 cut(s) 1114
BtsIMutI CAGTG 5 cut(s) 480, 645, 863, 964, 1114
Cac8I GCNNGC 1 cut(s) 1368
CfoI GCGC 1 cut(s) 1292
Cfr10I RCCGGY 3 cut(s) 137, 443, 608
Cfr13I GGNCC 4 cut(s) 441, 536, 701, 1034
CseI GACGC 2 cut(s) 499, 664
Csp6I GTAC 6 cut(s) 9, 427, 606, 834, 1040, 1345
CviAII CATG 6 cut(s) 304, 514, 679, 816, 916, 940
CviQI GTAC 6 cut(s) 9, 427, 606, 834, 1040, 1345
DdeI CTNAG 4 cut(s) 956, 1012, 1028, 1116
DpnI GATC 8 cut(s) 108, 120, 192, 352, 390, 506, 671, 1352
DpnII GATC 8 cut(s) 106, 118, 190, 350, 388, 504, 669, 1350
EaeI YGGCCR 3 cut(s) 474, 639, 1272
Eam1104I CTCTTC 3 cut(s) 454, 619, 1099
EarI CTCTTC 3 cut(s) 454, 619, 1099
Eco105I TACGTA 1 cut(s) 8
Eco130I CCWWGG 4 cut(s) 513, 587, 678, 915
Eco31I GGTCTC 1 cut(s) 783
Eco47I GGWCC 2 cut(s) 441, 1034
Eco57I CTGAAG 6 cut(s) 167, 303, 336, 369, 892, 1091
EcoT14I CCWWGG 4 cut(s) 513, 587, 678, 915
ErhI CCWWGG 4 cut(s) 513, 587, 678, 915
FaeI CATG 6 cut(s) 307, 517, 682, 819, 919, 943
FaqI GGGAC 2 cut(s) 272, 833
FatI CATG 6 cut(s) 303, 513, 678, 815, 915, 939
FauI CCCGC 1 cut(s) 1306
FbaI TGATCA 2 cut(s) 504, 669
FblI GTMKAC 1 cut(s) 338
Fnu4HI GCNGC 6 cut(s) 494, 659, 747, 1129, 1173, 1236
FokI GGATG 2 cut(s) 143, 932
Fsp4HI GCNGC 6 cut(s) 494, 659, 747, 1129, 1173, 1236
FspBI CTAG 5 cut(s) 206, 533, 588, 698, 972
GlaI GCGC 1 cut(s) 1291
GluI GCNGC 6 cut(s) 494, 659, 747, 1129, 1173, 1236
GsuI CTGGAG 1 cut(s) 807
HaeII RGCGCY 1 cut(s) 1293
HaeIII GGCC 5 cut(s) 476, 538, 641, 703, 1274
HapII CCGG 4 cut(s) 138, 167, 444, 609
HgaI GACGC 2 cut(s) 499, 664
HhaI GCGC 1 cut(s) 1292
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 6 cut(s) 307, 517, 682, 819, 919, 943
Hin6I GCGC 1 cut(s) 1290
HinP1I GCGC 1 cut(s) 1290
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HinfI GANTC 6 cut(s) 322, 332, 379, 485, 596, 650
HpaII CCGG 4 cut(s) 138, 167, 444, 609
HphI GGTGA 2 cut(s) 127, 292
Hpy166II GTNNAC 5 cut(s) 11, 339, 523, 688, 1034
Hpy188I TCNGA 9 cut(s) 316, 350, 360, 388, 504, 669, 1102, 1244, 1325
Hpy188III TCNNGA 3 cut(s) 92, 600, 902
Hpy8I GTNNAC 5 cut(s) 11, 339, 523, 688, 1034
Hpy99I CGWCG 4 cut(s) 340, 493, 658, 1244
HpyAV CCTTC 5 cut(s) 142, 393, 539, 704, 731
HpyCH4III ACNGT 2 cut(s) 58, 867
HpyCH4IV ACGT 4 cut(s) 7, 345, 1278, 1356
HpyCH4V TGCA 8 cut(s) 164, 214, 221, 434, 749, 754, 943, 1306
HpyF10VI GCNNNNNNNGC 3 cut(s) 1163, 1172, 1244
HpyF3I CTNAG 4 cut(s) 956, 1012, 1028, 1116
HpySE526I ACGT 4 cut(s) 7, 345, 1278, 1356
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 6 cut(s) 307, 517, 682, 819, 919, 943
HspAI GCGC 1 cut(s) 1290
Ksp22I TGATCA 2 cut(s) 504, 669
Kzo9I GATC 8 cut(s) 106, 118, 190, 350, 388, 504, 669, 1350
LguI GCTCTTC 2 cut(s) 454, 619
LmnI GCTCC 4 cut(s) 583, 962, 1244, 1363
Lsp1109I GCAGC 5 cut(s) 480, 645, 733, 1140, 1247
LweI GCATC 2 cut(s) 151, 910
MaeI CTAG 5 cut(s) 206, 533, 588, 698, 972
MaeII ACGT 4 cut(s) 7, 345, 1278, 1356
MaeIII GTNAC 9 cut(s) 3, 40, 133, 151, 415, 856, 928, 1210, 1393
MalI GATC 8 cut(s) 108, 120, 192, 352, 390, 506, 671, 1352
MboI GATC 8 cut(s) 106, 118, 190, 350, 388, 504, 669, 1350
MfeI CAATTG 1 cut(s) 829
MflI RGATCY 3 cut(s) 118, 350, 388
MhlI GDGCHC 1 cut(s) 580
MlsI TGGCCA 3 cut(s) 476, 641, 1274
MluNI TGGCCA 3 cut(s) 476, 641, 1274
MmeI TCCRAC 1 cut(s) 1222
Mox20I TGGCCA 3 cut(s) 476, 641, 1274
MscI TGGCCA 3 cut(s) 476, 641, 1274
MseI TTAA 2 cut(s) 26, 1142
MslI CAYNNNNRTG 2 cut(s) 302, 814
Msp20I TGGCCA 3 cut(s) 476, 641, 1274
MspI CCGG 4 cut(s) 138, 167, 444, 609
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 829
MvnI CGCG 1 cut(s) 853
MwoI GCNNNNNNNGC 3 cut(s) 1163, 1172, 1244
NciI CCSGG 1 cut(s) 168
NcoI CCATGG 3 cut(s) 513, 678, 915
NdeII GATC 8 cut(s) 106, 118, 190, 350, 388, 504, 669, 1350
NlaIII CATG 6 cut(s) 307, 517, 682, 819, 919, 943
NlaIV GGNNCC 2 cut(s) 120, 985
NmuCI GTSAC 5 cut(s) 40, 133, 151, 415, 928
NspI RCATGY 1 cut(s) 943
NspV TTCGAA 3 cut(s) 452, 594, 617
PciSI GCTCTTC 2 cut(s) 454, 619
PcsI WCGNNNNNNNCGW 1 cut(s) 1353
PfeI GAWTC 6 cut(s) 322, 332, 379, 485, 596, 650
PflFI GACNNNGTC 1 cut(s) 824
PflMI CCANNNNNTGG 1 cut(s) 98
PkrI GCNGC 6 cut(s) 495, 660, 748, 1130, 1174, 1237
Ppu21I YACGTR 1 cut(s) 8
PshAI GACNNNNGTC 1 cut(s) 344
PshBI ATTAAT 1 cut(s) 1142
Psp1406I AACGTT 1 cut(s) 1356
PspN4I GGNNCC 2 cut(s) 120, 985
PspPI GGNCC 4 cut(s) 441, 536, 701, 1034
PsuI RGATCY 3 cut(s) 118, 350, 388
PsyI GACNNNGTC 1 cut(s) 824
RsaI GTAC 6 cut(s) 10, 428, 607, 835, 1041, 1346
RsaNI GTAC 6 cut(s) 9, 427, 606, 834, 1040, 1345
RseI CAYNNNNRTG 2 cut(s) 302, 814
SalI GTCGAC 1 cut(s) 337
SapI GCTCTTC 2 cut(s) 454, 619
SaqAI TTAA 2 cut(s) 26, 1142
SatI GCNGC 6 cut(s) 494, 659, 747, 1129, 1173, 1236
Sau3AI GATC 8 cut(s) 106, 118, 190, 350, 388, 504, 669, 1350
Sau96I GGNCC 4 cut(s) 441, 536, 701, 1034
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 580
SfaNI GCATC 2 cut(s) 151, 910
SfcI CTRYAG 1 cut(s) 773
SfuI TTCGAA 3 cut(s) 452, 594, 617
SinI GGWCC 2 cut(s) 441, 1034
SmiMI CAYNNNNRTG 2 cut(s) 302, 814
SnaBI TACGTA 1 cut(s) 8
SsiI CCGC 3 cut(s) 851, 1172, 1313
SspMI CTAG 5 cut(s) 206, 533, 588, 698, 972
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 4 cut(s) 513, 587, 678, 915
TaaI ACNGT 2 cut(s) 58, 867
TaiI ACGT 4 cut(s) 10, 348, 1281, 1359
TaqI TCGA 7 cut(s) 338, 452, 488, 594, 617, 653, 1077
TatI WGTACW 2 cut(s) 426, 833
TauI GCSGC 1 cut(s) 1175
TfiI GAWTC 6 cut(s) 322, 332, 379, 485, 596, 650
Tru1I TTAA 2 cut(s) 26, 1142
Tru9I TTAA 2 cut(s) 26, 1142
TscAI CASTG 5 cut(s) 487, 652, 870, 964, 1114
TseFI GTSAC 5 cut(s) 40, 133, 151, 415, 928
TseI GCWGC 5 cut(s) 493, 658, 746, 1128, 1235
Tsp45I GTSAC 5 cut(s) 40, 133, 151, 415, 928
TspDTI ATGAA 4 cut(s) 39, 355, 1086, 1352
TspRI CASTG 5 cut(s) 487, 652, 870, 964, 1114
Tth111I GACNNNGTC 1 cut(s) 824
Van91I CCANNNNNTGG 1 cut(s) 98
VpaK11BI GGWCC 2 cut(s) 441, 1034
VspI ATTAAT 1 cut(s) 1142
XapI RAATTY 3 cut(s) 28, 46, 1319
XceI RCATGY 1 cut(s) 943
XmaJI CCTAGG 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 338
XspI CTAG 5 cut(s) 206, 533, 588, 698, 972
ZraI GACGTC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.