RLG00000005517

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001437
Physical Location & Seq
Reverse (-)
68260023 .. 68261813
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005517

Sequence Viewer

Length: 1221 bp
ATGGCTAATACCCCTGTTCCAGTATTCCTAATCAACCTTATAGCTCTGTCAGCTTCAATATTATTCTCTGTCATAATCAATCCCTCCGGCGCCGTGTTCGTGAGCATCGATTGTGGCTTCAATGGTTCCTCCACTTACAAAGACAAAAATTCGATCGTATGGACGGGGGACGATGCTTACATTAACAATAAGCATGACTCCCAAGCGCTCCAGTACATCGATACCGAAGACGACTGGAGCAACAGCGTAAGAATCTTCCCAGCCTTGAAGAAAAACTGTTACACCATCCCAGTTGGCAAAGCTGGCCAAAGAATTCTGGTTCGAGCAAGTTTCTTTTATTGGGGCTTTTATGATAATAAGACTTCTCCCACCTTTGAGCTCCAGTTTGACAGCAACTACTGGGCCACCGTTAACAAACCCAATATTGTTTCTTATGAGGCAATCTATGTTGCCAAGCAGAATACGACTAGCATATGTCTTGCTCGAATTGAAAATGATCAGATCCCATTCATTTCTGCCCTCGAAATTCGAAGCTTGGATTTCAAAATGTATAGCCATGTCGATCCCAAGTATGCTCTTCTGTTGGCAAATAGGTTTTATGATGGTGGAAATCAAACTCTCAGGTATCCAGATGATGCATATGATCGAATTTGGGTGCCGGAGATTGGTTTTGGATCAATTACTGTGAGCGTGAAAGGTAACGGTGGGAGCATTGACACAAGTGGTGCACAAGATAATCCTCCAGATGATGTGTTGGGAAATGTAGTGGCAACCGAAGGAACTGCTTGGACACTAAATCTAACCACCAGCGGGCTTCCAGACGATAAGAACGTACCAATTTACATCACAACTTACTTTTCTGAAGTTGACAAAACGGTCAAAAGATCCCTACAATTTTCCATAGACAGCAAGCCTTACGATCGACCTGTGGTTCCACCTTTTGGAAGCGTAGCCGTAGTGTACATTACCAACATGACGGCATCTTCTAACACTAATTTCAGTATACAGGCAGCTGCTGATTCCTCGATTCCTCCCCTCATCAATGCCTATGAAGTTTATACCATCACTGGACCTCTAGCACAAGCAACCAACACTGACGATGGTTCACTTCCAGACTTTAGTTCCATGGATGCGCTGCAGACAATTGATTTGCACAATAACAGCTTGGATGGAGCTATTCCTGGTTTTCTGGGCTCCATATCTGATCTCAAACTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

407

Amino Acids

44.52

Weight (kDa)

4.51

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 36 - 355 1e-63 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 875
AccB1I GGYRCC 2 cut(s) 89, 655
AccB7I CCANNNNNTGG 1 cut(s) 941
AccI GTMKAC 1 cut(s) 1003
AciI CCGC 1 cut(s) 810
AclWI GGATC 4 cut(s) 496, 557, 682, 879
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 4 cut(s) 148, 312, 525, 648
AcuI CTGAAG 1 cut(s) 882
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 3 cut(s) 215, 834, 962
AfeI AGCGCT 1 cut(s) 207
AfiI CCNNNNNNNGG 3 cut(s) 665, 810, 941
AgsI TTSAA 5 cut(s) 57, 121, 268, 491, 544
AjnI CCWGG 1 cut(s) 1180
AluBI AGCT 8 cut(s) 44, 53, 302, 379, 534, 1013, 1164, 1175
AluI AGCT 8 cut(s) 44, 53, 302, 379, 534, 1013, 1164, 1175
Alw21I GWGCWC 2 cut(s) 381, 730
Alw44I GTGCAC 1 cut(s) 726
AlwI GGATC 4 cut(s) 496, 557, 682, 879
AlwNI CAGNNNCTG 1 cut(s) 1016
Aor51HI AGCGCT 1 cut(s) 207
AoxI GGCC 2 cut(s) 304, 402
ApaLI GTGCAC 1 cut(s) 726
ApeKI GCWGC 3 cut(s) 1010, 1013, 1135
ApoI RAATTY 4 cut(s) 148, 312, 525, 648
ArsI GACNNNNNNTTYG 2 cut(s) 1132, 1164
AspLEI GCGC 3 cut(s) 92, 208, 1135
AspS9I GGNCC 2 cut(s) 402, 1070
AsuII TTCGAA 1 cut(s) 529
AvaII GGWCC 1 cut(s) 1070
BaeGI GKGCMC 1 cut(s) 730
BalI TGGCCA 1 cut(s) 306
BanI GGYRCC 2 cut(s) 89, 655
BanII GRGCYC 2 cut(s) 381, 1196
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 381, 730
BbvI GCAGC 3 cut(s) 1000, 1022, 1122
BccI CCATC 5 cut(s) 293, 596, 1070, 1094, 1163
BceAI ACGGC 3 cut(s) 77, 938, 993
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BciT130I CCWGG 1 cut(s) 1182
BciVI GTATCC 1 cut(s) 636
BclI TGATCA 1 cut(s) 496
BfaI CTAG 2 cut(s) 468, 1076
BfmI CTRYAG 1 cut(s) 1136
BfoI RGCGCY 2 cut(s) 93, 209
BfuI GTATCC 1 cut(s) 636
BisI GCNGC 3 cut(s) 1011, 1014, 1136
BlsI GCNGC 3 cut(s) 1012, 1015, 1137
Bme1390I CCNGG 1 cut(s) 1182
Bme18I GGWCC 1 cut(s) 1070
BmgT120I GGNCC 2 cut(s) 402, 1070
BmiI GGNNCC 5 cut(s) 91, 127, 657, 933, 1195
BmrFI CCNGG 1 cut(s) 1182
BmrI ACTGGG 2 cut(s) 284, 409
BmsI GCATC 5 cut(s) 114, 163, 625, 989, 1120
BmuI ACTGGG 2 cut(s) 284, 409
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 4 cut(s) 194, 256, 365, 726
Bpu14I TTCGAA 1 cut(s) 529
Bsa29I ATCGAT 2 cut(s) 108, 219
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 1125
Bsc4I CCNNNNNNNGG 3 cut(s) 665, 810, 941
Bse1I ACTGG 7 cut(s) 20, 211, 239, 290, 382, 404, 1072
BseBI CCWGG 1 cut(s) 1182
BseCI ATCGAT 2 cut(s) 108, 219
BseDI CCNNGG 1 cut(s) 1125
BseGI GGATG 3 cut(s) 285, 1135, 1174
BseLI CCNNNNNNNGG 3 cut(s) 665, 810, 941
BseMII CTCAG 1 cut(s) 634
BseNI ACTGG 7 cut(s) 20, 211, 239, 290, 382, 404, 1072
BseSI GKGCMC 1 cut(s) 730
BseXI GCAGC 3 cut(s) 1000, 1022, 1122
BseYI CCCAGC 1 cut(s) 259
Bsh1285I CGRYCG 2 cut(s) 156, 922
BshFI GGCC 2 cut(s) 306, 404
BshNI GGYRCC 2 cut(s) 89, 655
BshVI ATCGAT 2 cut(s) 108, 219
BsiEI CGRYCG 2 cut(s) 156, 922
BsiHKAI GWGCWC 2 cut(s) 381, 730
BsiSI CCGG 2 cut(s) 87, 659
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 3 cut(s) 665, 810, 941
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 2 cut(s) 306, 404
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 3 cut(s) 381, 730, 1196
Bsp1407I TGTACA 1 cut(s) 960
Bsp143I GATC 9 cut(s) 153, 496, 501, 562, 643, 674, 884, 919, 1204
Bsp19I CCATGG 1 cut(s) 1125
BspACI CCGC 1 cut(s) 810
BspANI GGCC 2 cut(s) 306, 404
BspCNI CTCAG 1 cut(s) 633
BspDI ATCGAT 2 cut(s) 108, 219
BspLI GGNNCC 5 cut(s) 91, 127, 657, 933, 1195
BspMAI CTGCAG 1 cut(s) 1140
BspPI GGATC 4 cut(s) 496, 557, 682, 879
BspQI GCTCTTC 1 cut(s) 582
BspT104I TTCGAA 1 cut(s) 529
BspT107I GGYRCC 2 cut(s) 89, 655
BsrGI TGTACA 1 cut(s) 960
BsrI ACTGG 7 cut(s) 20, 211, 239, 290, 382, 404, 1072
BssECI CCNNGG 1 cut(s) 1125
BssMI GATC 9 cut(s) 153, 496, 501, 562, 643, 674, 884, 919, 1204
BssNAI GTATAC 1 cut(s) 1004
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 1125
Bst1107I GTATAC 1 cut(s) 1004
Bst2UI CCWGG 1 cut(s) 1182
Bst4CI ACNGT 6 cut(s) 278, 409, 685, 704, 877, 1218
Bst6I CTCTTC 1 cut(s) 582
BstACI GRCGYC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 960
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 3 cut(s) 304, 812, 911
BstDEI CTNAG 1 cut(s) 620
BstDSI CCRYGG 1 cut(s) 1125
BstF5I GGATG 3 cut(s) 285, 1135, 1174
BstH2I RGCGCY 2 cut(s) 93, 209
BstHHI GCGC 3 cut(s) 92, 208, 1135
BstKTI GATC 9 cut(s) 156, 499, 504, 565, 646, 677, 887, 922, 1207
BstMBI GATC 9 cut(s) 153, 496, 501, 562, 643, 674, 884, 919, 1204
BstMCI CGRYCG 2 cut(s) 156, 922
BstMWI GCNNNNNNNGC 2 cut(s) 50, 303
BstNI CCWGG 1 cut(s) 1182
BstSCI CCNGG 1 cut(s) 1180
BstSFI CTRYAG 1 cut(s) 1136
BstSLI GKGCMC 1 cut(s) 730
BstV1I GCAGC 3 cut(s) 1000, 1022, 1122
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 2 cut(s) 501, 884
BstYI RGATCY 2 cut(s) 501, 884
BstZ17I GTATAC 1 cut(s) 1004
Bsu15I ATCGAT 2 cut(s) 108, 219
BsuI GTATCC 1 cut(s) 636
BsuRI GGCC 2 cut(s) 306, 404
BsuTUI ATCGAT 2 cut(s) 108, 219
BtgI CCRYGG 1 cut(s) 1125
BtsCI GGATG 3 cut(s) 285, 1135, 1174
BtsIMutI CAGTG 2 cut(s) 1065, 1092
Cac8I GCNNGC 3 cut(s) 304, 812, 911
CaiI CAGNNNCTG 1 cut(s) 1016
CfoI GCGC 3 cut(s) 92, 208, 1135
Cfr13I GGNCC 2 cut(s) 402, 1070
ClaI ATCGAT 2 cut(s) 108, 219
Csp6I GTAC 3 cut(s) 214, 833, 961
CviAII CATG 4 cut(s) 194, 557, 973, 1126
CviQI GTAC 3 cut(s) 214, 833, 961
DdeI CTNAG 1 cut(s) 620
DinI GGCGCC 1 cut(s) 91
DpnI GATC 9 cut(s) 155, 498, 503, 564, 645, 676, 886, 921, 1206
DpnII GATC 9 cut(s) 153, 496, 501, 562, 643, 674, 884, 919, 1204
DrdI GACNNNNNNGTC 1 cut(s) 875
DseDI GACNNNNNNGTC 1 cut(s) 875
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Ecl136II GAGCTC 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 1125
Eco24I GRGCYC 2 cut(s) 381, 1196
Eco47I GGWCC 1 cut(s) 1070
Eco47III AGCGCT 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 882
EcoICRI GAGCTC 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 1180
EcoT14I CCWWGG 1 cut(s) 1125
EcoT22I ATGCAT 1 cut(s) 640
EcoT38I GRGCYC 2 cut(s) 381, 1196
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 1125
FaeI CATG 4 cut(s) 197, 560, 976, 1129
FaqI GGGAC 1 cut(s) 182
FatI CATG 4 cut(s) 193, 556, 972, 1125
FauI CCCGC 1 cut(s) 803
FauNDI CATATG 2 cut(s) 473, 640
FbaI TGATCA 1 cut(s) 496
FblI GTMKAC 1 cut(s) 1003
Fnu4HI GCNGC 3 cut(s) 1011, 1014, 1136
FokI GGATG 3 cut(s) 272, 1142, 1181
FriOI GRGCYC 2 cut(s) 381, 1196
Fsp4HI GCNGC 3 cut(s) 1011, 1014, 1136
FspBI CTAG 2 cut(s) 468, 1076
GlaI GCGC 3 cut(s) 91, 207, 1134
GluI GCNGC 3 cut(s) 1011, 1014, 1136
GsaI CCCAGC 1 cut(s) 263
GsuI CTGGAG 4 cut(s) 194, 256, 365, 726
HaeII RGCGCY 2 cut(s) 93, 209
HaeIII GGCC 2 cut(s) 306, 404
HapII CCGG 2 cut(s) 87, 659
HhaI GCGC 3 cut(s) 92, 208, 1135
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 4 cut(s) 197, 560, 976, 1129
Hin6I GCGC 3 cut(s) 90, 206, 1133
HinP1I GCGC 3 cut(s) 90, 206, 1133
HincII GTYRAC 2 cut(s) 412, 868
HindII GTYRAC 2 cut(s) 412, 868
HindIII AAGCTT 1 cut(s) 532
HinfI GANTC 4 cut(s) 197, 252, 1019, 1027
HpaI GTTAAC 1 cut(s) 412
HpaII CCGG 2 cut(s) 87, 659
Hpy166II GTNNAC 6 cut(s) 412, 728, 868, 961, 1004, 1106
Hpy188I TCNGA 3 cut(s) 501, 862, 1204
Hpy188III TCNNGA 5 cut(s) 100, 629, 743, 818, 1112
Hpy8I GTNNAC 6 cut(s) 412, 728, 868, 961, 1004, 1106
HpyAV CCTTC 1 cut(s) 770
HpyCH4III ACNGT 6 cut(s) 278, 409, 685, 704, 877, 1218
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 4 cut(s) 638, 728, 1138, 1153
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 303
HpyF3I CTNAG 1 cut(s) 620
HpySE526I ACGT 1 cut(s) 831
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 4 cut(s) 197, 560, 976, 1129
HspAI GCGC 3 cut(s) 90, 206, 1133
KasI GGCGCC 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 496
KspAI GTTAAC 1 cut(s) 412
Kzo9I GATC 9 cut(s) 153, 496, 501, 562, 643, 674, 884, 919, 1204
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 6 cut(s) 213, 237, 384, 708, 1172, 1199
Lsp1109I GCAGC 3 cut(s) 1000, 1022, 1122
LweI GCATC 5 cut(s) 114, 163, 625, 989, 1120
MaeI CTAG 2 cut(s) 468, 1076
MaeII ACGT 1 cut(s) 831
MaeIII GTNAC 2 cut(s) 278, 698
MalI GATC 9 cut(s) 155, 498, 503, 564, 645, 676, 886, 921, 1206
MboI GATC 9 cut(s) 153, 496, 501, 562, 643, 674, 884, 919, 1204
MboII GAAGA 5 cut(s) 239, 247, 280, 569, 975
MfeI CAATTG 1 cut(s) 1143
MflI RGATCY 2 cut(s) 501, 884
MhlI GDGCHC 3 cut(s) 381, 730, 1196
MlsI TGGCCA 1 cut(s) 306
MluNI TGGCCA 1 cut(s) 306
Mly113I GGCGCC 1 cut(s) 90
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 9 cut(s) 94, 139, 430, 530, 750, 1033, 1041, 1046, 1083
Mox20I TGGCCA 1 cut(s) 306
Mph1103I ATGCAT 1 cut(s) 640
MscI TGGCCA 1 cut(s) 306
MseI TTAA 2 cut(s) 183, 411
Msp20I TGGCCA 1 cut(s) 306
MspA1I CMGCKG 2 cut(s) 810, 1013
MspI CCGG 2 cut(s) 87, 659
MspR9I CCNGG 1 cut(s) 1182
MunI CAATTG 1 cut(s) 1143
MvaI CCWGG 1 cut(s) 1182
MwoI GCNNNNNNNGC 2 cut(s) 50, 303
NarI GGCGCC 1 cut(s) 90
NcoI CCATGG 1 cut(s) 1125
NdeI CATATG 2 cut(s) 473, 640
NdeII GATC 9 cut(s) 153, 496, 501, 562, 643, 674, 884, 919, 1204
NlaIII CATG 4 cut(s) 197, 560, 976, 1129
NlaIV GGNNCC 5 cut(s) 91, 127, 657, 933, 1195
NsiI ATGCAT 1 cut(s) 640
NspV TTCGAA 1 cut(s) 529
PciSI GCTCTTC 1 cut(s) 582
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 828
PfeI GAWTC 3 cut(s) 252, 1019, 1027
PflMI CCANNNNNTGG 1 cut(s) 941
PkrI GCNGC 3 cut(s) 1012, 1015, 1137
Ple19I CGATCG 2 cut(s) 156, 922
PleI GAGTC 1 cut(s) 191
PluTI GGCGCC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 1180
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 1180
PspN4I GGNNCC 5 cut(s) 91, 127, 657, 933, 1195
PspPI GGNCC 2 cut(s) 402, 1070
PstI CTGCAG 1 cut(s) 1140
PstNI CAGNNNCTG 1 cut(s) 1016
PsuI RGATCY 2 cut(s) 501, 884
PvuI CGATCG 2 cut(s) 156, 922
PvuII CAGCTG 1 cut(s) 1013
RsaI GTAC 3 cut(s) 215, 834, 962
RsaNI GTAC 3 cut(s) 214, 833, 961
SacI GAGCTC 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 183, 411
SatI GCNGC 3 cut(s) 1011, 1014, 1136
Sau3AI GATC 9 cut(s) 153, 496, 501, 562, 643, 674, 884, 919, 1204
Sau96I GGNCC 2 cut(s) 402, 1070
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 1182
SduI GDGCHC 3 cut(s) 381, 730, 1196
SfaNI GCATC 5 cut(s) 114, 163, 625, 989, 1120
SfcI CTRYAG 1 cut(s) 1136
SfoI GGCGCC 1 cut(s) 91
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 1 cut(s) 1070
SsiI CCGC 1 cut(s) 810
SspDI GGCGCC 1 cut(s) 89
SspI AATATT 2 cut(s) 60, 424
SspMI CTAG 2 cut(s) 468, 1076
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 1180
StyI CCWWGG 1 cut(s) 1125
TaaI ACNGT 6 cut(s) 278, 409, 685, 704, 877, 1218
TaiI ACGT 1 cut(s) 834
TatI WGTACW 2 cut(s) 213, 960
TfiI GAWTC 3 cut(s) 252, 1019, 1027
Tru1I TTAA 2 cut(s) 183, 411
Tru9I TTAA 2 cut(s) 183, 411
TscAI CASTG 2 cut(s) 1072, 1099
TseI GCWGC 3 cut(s) 1010, 1013, 1135
TspDTI ATGAA 2 cut(s) 499, 1065
TspRI CASTG 2 cut(s) 1072, 1099
Van91I CCANNNNNTGG 1 cut(s) 941
VneI GTGCAC 1 cut(s) 726
VpaK11BI GGWCC 1 cut(s) 1070
XapI RAATTY 4 cut(s) 148, 312, 525, 648
XmiI GTMKAC 1 cut(s) 1003
XspI CTAG 2 cut(s) 468, 1076
Zsp2I ATGCAT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.