Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001437

Physical Location & Seq

Genomic Coordinates Forward (+)

652272 .. 653418

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG007800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTTCGTGAGCAACAGCGTAAGAATCTTCCCAGCCTTGAAGAAAAACTGTTACACCATCCCAGTTGACAAAGCTGGCCAAAGAATTCTGGTTCGAGTAAGTTTCTTTTATTGGGGCTTTTATGTTAATAAGACTTCTCCCACCTTTGAGCTCCAGTTTGACGGCAACTACTGGACCACCGTTAACAAACCCAATATTGTTTCTTATGAAGCAATCTATGTTGCCAAGCAGAATACGACTAGCATATGTCTTGCTCGAATTGAAGATGATCAGATCCCATTCATTTCTGCACTCGAAATTCGAAGCTTGGATTTCAAAATGTACAGCCATGTCGATCCCAAGTATGCTCTTCTGTTGGCAAATAGGTTTTATGATGGTGGAAATCAAACTCTCAGGTATCCAGATGATGCATATGATAGAATTTGGGTGCCGCAGATTGGTTTTGGATCAATTACTGTGAGCGTGAAAGGTAGCGGTGGGAGCAGGCTTCCAGACGATAAGAACGTACCAATTTACATCACAACTTACTTTTCTGAAGTTGACAAAACGATCAAAAGATCCCTACAATTTTCGATAGACAGCAAGCCTTATGATCGACCTGTGGTTCCACCTTTTGGAAGCGTAGCCGTAGTGTACATTACCAACATGACGGCATCTTCTAACACTAGTTTCAGCATACAGGCAGATGCTGATTCCTCGATTCCTCCCCTCATCAATGCCTATGAAGTTTATACCATCACTGGACCTCTAGCACAAGCAACCAACTCTAAAGATGTGGAAGGACTAGCAGCACTGCAAAGGGGATTCGATGTACTAGAGAAATGGAGTGGGGATCCTTGTCTTCCATCATCATTTGCATGGGAATGGGTTCAATGTGATGCTGATCCCGCTCCTCGTGTTATATCACTAGAAGAAATTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

307

Amino Acids

34.44

Weight (kDa)

5.06

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	5 - 145	1e-36	Malectin-like domain
Malectin_like	PF12819	164 - 246	1.5e-09	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24485 AT1G24485 AT1G24485 AT1G24485 AT3G46240 AT3G46260 AT3G46270 AT3G46270 AT3G46280
fragaria_vesca	FvH4_3g34600 FvH4_3g34600 FvH4_3g34610 FvH4_3g34610 FvH4_7g34060 FvH4_7g34060
malus_domestica	MD06G1235100.v1.1 MD11G1117200.v1.1
prunus_persica	Prupe.2G327000_v2.0.a1 Prupe.2G327000_v2.0.a1 Prupe.5G239900_v2.0.a1 Prupe.6G087500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0062321 RchiOBHm_Chr7g0177641 RchiOBHm_Chr7g0177651
rosa_laevigata	RLG00000005517 RLG00000026048 RLG00000035549
rosa_multiflora	Rmu_sc0006298.1_g000001 Rmu_ssc0000236.1_g000001 Rmu_ssc0000409.1_g000030 Rmu_ssc0000409.1_g000031
rosa_roxburghii	Rroxscaffold_1G00018380 Rroxscaffold_3G00275690 Rroxscaffold_3G00275700 Rroxscaffold_4G00276770
rosa_rugosa	Rorug01G0446900 Rorug05G0348200 Rorug05G0348300 Rorug06G0408300
rosa_samantha	Rh1CG442900 Rh5AG408300 Rh5BG422000 Rh5CG446000 Rh5DG437000 Rh7AG007700 Rh7BG007500 Rh7BG007600 Rh7CG008100 Rh7DG007800
rosa_wichuraiana	Rw0G008230 Rw5G038470 Rw7G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccBSI	CCGCTC	1 cut(s)	890
AciI	CCGC	3 cut(s)	431, 474, 888
AclWI	GGATC	7 cut(s)	268, 329, 454, 552, 827, 840, 878
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	3 cut(s)	84, 297, 420
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	4 cut(s)	323, 507, 635, 813
AfiI	CCNNNNNNNGG	2 cut(s)	437, 614
AgsI	TTSAA	4 cut(s)	40, 263, 316, 872
AhlI	ACTAGT	1 cut(s)	665
AluBI	AGCT	3 cut(s)	74, 151, 306
AluI	AGCT	3 cut(s)	74, 151, 306
Alw21I	GWGCWC	1 cut(s)	153
AlwI	GGATC	7 cut(s)	268, 329, 454, 552, 827, 840, 878
AlwNI	CAGNNNCTG	1 cut(s)	689
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	788
ApoI	RAATTY	3 cut(s)	84, 297, 420
Asp700I	GAANNNNTTC	1 cut(s)	867
AspS9I	GGNCC	2 cut(s)	174, 743
AsuII	TTCGAA	1 cut(s)	301
AvaII	GGWCC	2 cut(s)	174, 743
BalI	TGGCCA	1 cut(s)	78
BamHI	GGATCC	1 cut(s)	832
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	894
BbsI	GAAGAC	1 cut(s)	833
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	800
BccI	CCATC	4 cut(s)	65, 368, 743, 853
BceAI	ACGGC	3 cut(s)	178, 611, 666
BciVI	GTATCC	1 cut(s)	408
BclI	TGATCA	1 cut(s)	268
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	6 cut(s)	240, 666, 749, 785, 815, 908
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	2 cut(s)	431, 789
BlsI	GCNGC	2 cut(s)	432, 790
Bme18I	GGWCC	2 cut(s)	174, 743
BmgT120I	GGNCC	2 cut(s)	174, 743
BmiI	GGNNCC	3 cut(s)	429, 606, 834
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	4 cut(s)	397, 662, 676, 868
BmuI	ACTGGG	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	833
BpmI	CTGGAG	1 cut(s)	137
Bpu14I	TTCGAA	1 cut(s)	301
BsaBI	GATNNNNATC	1 cut(s)	882
Bsc4I	CCNNNNNNNGG	2 cut(s)	437, 614
Bse1I	ACTGG	4 cut(s)	62, 154, 176, 745
Bse8I	GATNNNNATC	1 cut(s)	882
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	882
BseLI	CCNNNNNNNGG	2 cut(s)	437, 614
BseMII	CTCAG	1 cut(s)	406
BseNI	ACTGG	4 cut(s)	62, 154, 176, 745
BseRI	GAGGAG	1 cut(s)	882
BseXI	GCAGC	1 cut(s)	800
BseYI	CCCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	437, 614
BsnI	GGCC	1 cut(s)	78
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp1407I	TGTACA	2 cut(s)	321, 633
Bsp143I	GATC	9 cut(s)	268, 273, 334, 446, 549, 557, 592, 832, 883
BspACI	CCGC	3 cut(s)	431, 474, 888
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	405
BspLI	GGNNCC	3 cut(s)	429, 606, 834
BspPI	GGATC	7 cut(s)	268, 329, 454, 552, 827, 840, 878
BspQI	GCTCTTC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	301
BspT107I	GGYRCC	1 cut(s)	427
BsrBI	CCGCTC	1 cut(s)	890
BsrGI	TGTACA	2 cut(s)	321, 633
BsrI	ACTGG	4 cut(s)	62, 154, 176, 745
BssMI	GATC	9 cut(s)	268, 273, 334, 446, 549, 557, 592, 832, 883
BssSI	CACGAG	1 cut(s)	894
Bst2BI	CACGAG	1 cut(s)	894
Bst4CI	ACNGT	3 cut(s)	50, 181, 457
Bst6I	CTCTTC	1 cut(s)	354
BstAUI	TGTACA	2 cut(s)	321, 633
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	3 cut(s)	76, 485, 584
BstDEI	CTNAG	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	9 cut(s)	271, 276, 337, 449, 552, 560, 595, 835, 886
BstMBI	GATC	9 cut(s)	268, 273, 334, 446, 549, 557, 592, 832, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	480, 887
BstV1I	GCAGC	1 cut(s)	800
BstV2I	GAAGAC	1 cut(s)	833
BstX2I	RGATCY	3 cut(s)	273, 557, 832
BstYI	RGATCY	3 cut(s)	273, 557, 832
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	791
BtsIMutI	CAGTG	2 cut(s)	738, 791
Cac8I	GCNNGC	3 cut(s)	76, 485, 584
CaiI	CAGNNNCTG	1 cut(s)	689
Cfr13I	GGNCC	2 cut(s)	174, 743
Csp6I	GTAC	4 cut(s)	322, 506, 634, 812
CviAII	CATG	3 cut(s)	329, 646, 858
CviQI	GTAC	4 cut(s)	322, 506, 634, 812
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	9 cut(s)	270, 275, 336, 448, 551, 559, 594, 834, 885
DpnII	GATC	9 cut(s)	268, 273, 334, 446, 549, 557, 592, 832, 883
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	174, 743
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	555
EcoICRI	GAGCTC	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	3 cut(s)	332, 649, 861
FatI	CATG	3 cut(s)	328, 645, 857
FauI	CCCGC	1 cut(s)	895
FauNDI	CATATG	2 cut(s)	245, 412
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	431, 789
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	431, 789
FspBI	CTAG	6 cut(s)	240, 666, 749, 785, 815, 908
GluI	GCNGC	2 cut(s)	431, 789
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	332, 649, 861
HincII	GTYRAC	3 cut(s)	67, 184, 541
HindII	GTYRAC	3 cut(s)	67, 184, 541
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	4 cut(s)	24, 692, 700, 804
HpaI	GTTAAC	1 cut(s)	184
Hpy166II	GTNNAC	4 cut(s)	67, 184, 541, 634
Hpy188I	TCNGA	2 cut(s)	273, 535
Hpy188III	TCNNGA	3 cut(s)	7, 401, 491
Hpy8I	GTNNAC	4 cut(s)	67, 184, 541, 634
HpyAV	CCTTC	1 cut(s)	773
HpyCH4III	ACNGT	3 cut(s)	50, 181, 457
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	4 cut(s)	290, 410, 796, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	480, 887
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	3 cut(s)	332, 649, 861
Ksp22I	TGATCA	1 cut(s)	268
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	9 cut(s)	268, 273, 334, 446, 549, 557, 592, 832, 883
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	3 cut(s)	156, 480, 895
Lsp1109I	GCAGC	1 cut(s)	800
LweI	GCATC	4 cut(s)	397, 662, 676, 868
MaeI	CTAG	6 cut(s)	240, 666, 749, 785, 815, 908
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	9 cut(s)	270, 275, 336, 448, 551, 559, 594, 834, 885
MbiI	CCGCTC	1 cut(s)	890
MboI	GATC	9 cut(s)	268, 273, 334, 446, 549, 557, 592, 832, 883
MboII	GAAGA	7 cut(s)	19, 52, 275, 341, 648, 833, 923
MflI	RGATCY	3 cut(s)	273, 557, 832
MhlI	GDGCHC	1 cut(s)	153
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	8 cut(s)	84, 258, 297, 420, 450, 510, 566, 915
MluNI	TGGCCA	1 cut(s)	78
MnlI	CCTC	5 cut(s)	706, 714, 719, 756, 903
Mox20I	TGGCCA	1 cut(s)	78
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	867
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	3 cut(s)	126, 183, 922
MslI	CAYNNNNRTG	2 cut(s)	856, 862
Msp20I	TGGCCA	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	480, 887
NdeI	CATATG	2 cut(s)	245, 412
NdeII	GATC	9 cut(s)	268, 273, 334, 446, 549, 557, 592, 832, 883
NlaIII	CATG	3 cut(s)	332, 649, 861
NlaIV	GGNNCC	3 cut(s)	429, 606, 834
NsiI	ATGCAT	1 cut(s)	412
NspV	TTCGAA	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	867
PfeI	GAWTC	4 cut(s)	24, 692, 700, 804
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	2 cut(s)	432, 790
Psp124BI	GAGCTC	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	429, 606, 834
PspPI	GGNCC	2 cut(s)	174, 743
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	3 cut(s)	273, 557, 832
RsaI	GTAC	4 cut(s)	323, 507, 635, 813
RsaNI	GTAC	4 cut(s)	322, 506, 634, 812
RseI	CAYNNNNRTG	2 cut(s)	856, 862
SacI	GAGCTC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	126, 183, 922
SatI	GCNGC	2 cut(s)	431, 789
Sau3AI	GATC	9 cut(s)	268, 273, 334, 446, 549, 557, 592, 832, 883
Sau96I	GGNCC	2 cut(s)	174, 743
SduI	GDGCHC	1 cut(s)	153
SfaNI	GCATC	4 cut(s)	397, 662, 676, 868
SfuI	TTCGAA	1 cut(s)	301
SinI	GGWCC	2 cut(s)	174, 743
SmiMI	CAYNNNNRTG	2 cut(s)	856, 862
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	8 cut(s)	84, 258, 297, 420, 450, 510, 566, 915
SsiI	CCGC	3 cut(s)	431, 474, 888
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	6 cut(s)	240, 666, 749, 785, 815, 908
SstI	GAGCTC	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	50, 181, 457
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	9 cut(s)	94, 256, 294, 301, 333, 572, 595, 698, 807
TasI	AATT	8 cut(s)	84, 258, 297, 420, 450, 510, 566, 915
TatI	WGTACW	3 cut(s)	321, 633, 811
TauI	GCSGC	1 cut(s)	433
TfiI	GAWTC	4 cut(s)	24, 692, 700, 804
Tru1I	TTAA	3 cut(s)	126, 183, 922
Tru9I	TTAA	3 cut(s)	126, 183, 922
TscAI	CASTG	2 cut(s)	745, 798
TseI	GCWGC	1 cut(s)	788
TspDTI	ATGAA	3 cut(s)	222, 271, 738
TspRI	CASTG	2 cut(s)	745, 798
Van91I	CCANNNNNTGG	1 cut(s)	614
VpaK11BI	GGWCC	2 cut(s)	174, 743
XapI	RAATTY	3 cut(s)	84, 297, 420
XmnI	GAANNNNTTC	1 cut(s)	867
XspI	CTAG	6 cut(s)	240, 666, 749, 785, 815, 908
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.