FvH4_3g34610

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001437
Physical Location & Seq
Forward (+)
29989917 .. 29993976
4060 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34610.t1

Sequence Viewer

Length: 1650 bp
ATGAGCACTTTGAGAGTGTTTACAACTAGGAAGAAAAACTGTTACTCCATTGATGCTGAAAAGGGAGCTCAGTTTCTTGTGCGTGGAAGTTTCTACTATGGAAACTATGACAAGAAATCAGCTCCTCCTTCCTTTGATGTTCTTTTGGATGGGAATTTTTTTGACACAATTTATACTACAGCTGAGGATGTTGTCTATTTTGAAGTTATATATGTTGCCACAGCCGGCTCTATACAACTATGTCTAGCTCAATCTAAGCCTAACCAATTTCCATTTATATCCGCGATTAAGGTCCGACTTCTGGATCCAACAATGTACTCTCATTTTGATCCCAACTATATCATGGTAAATACAAGGAGGGTTGCTTTTGGTGCAACTAGTTCTATAAGATATCCTGATGATGATTATGACCGTTATTGGGATCCATCGGGGGATGCCAATACGAGCATACTGAAGGTCACAAGTGATGCACCAGGTATTGATGGCCTTGTGGAAGATCAGCCTCCAAAACTAGCTATGCAAACAGCAATAACCACCTCAGAAACATCACAACAACTGAGTCTTGGCACTGCTCTTCCAAGAGATGAAGTTCCCATTTACATCACCATGTTCTTCTCCGAAGTGAATCTACTTGATCCGTTGACTGATACCAGATCCTTTCAGATTTTCGTTGATGACGATACTCCTTCAGATCCCATCATTCCCATCTATGGAGGCGTGACAGAAATGAATATTACAAACAGGACTGGCTCTTCGAATACTTCGATTACTCTGGTGGCCACAACTGCTTCAACGCTGCCTCCCCTGATCAACGCCATGGAAGTTTACTATCTTCAAGGGCCACTAACAGAGGGAACAAATAGTAAAGATGTTGAAGGGCTGGCTGCATTGCAAGCAGAGTTCAGCATACTACAGGAATGGACTGGAGACCCTTGCCTTCCATCTCCATATACATGGGACTGGGTCGATTGCACTACTGATGACACACCAAGAGTAACAGCACTGTATTTGAACGGCTATGGTCTCTCTGGGGAACTTCCAGACTTCAGCTCCATGGATGCTCTTGTCACAATAGATATGCACAACAACAGCTTGAGTGGAGCAATTCCTAGTTTTCTTGGCACCATGCCCAATCTAAAAGAATTGAACTTAGGAGACAATGAACTGAGTGGACCAGTACCCTCCACAATCTCAAAGAATACCAAGCTGAAGTTAGAGGATTCTGGCAATCCTAATCTATGTGCCTCTGGTGAATCCTGCAAGACAAGTGCTAGTAATGACAGCCCCTCTTCATCAGGTAGTAGTGGCACTCCGAAGAAAAGCAGCAATCTACCATTAATTCTTGGAATAGCAATTCCAGCTTTTCTTCTGTTCTGGGGTATTGTGATAGTGTGTGTCTGTGTAAGTACGAATAAGAGAAGAAGAGAAGCCATCGGAGCCATTGGCACAGGACAAGCTGGTATGGCCAACATGCCTAACGGCGCTCAACAAAGAGTGCAAATGATGAACGGTCAAATGGCGGATAAGTTCGGAGAAGTTGTGATGAACCAGTTCGAGGTCAATGTTGAGGAGCAAGCAACCCCAGACTATCAGCAACAAGTAACGCCAGAACACATACAAGATCAAGACGATAGGCGACTGCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

550

Amino Acids

60.04

Weight (kDa)

4.44

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 2 - 277 2.4e-67 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1121
AccII CGCG 1 cut(s) 284
AciI CCGC 2 cut(s) 282, 1520
AclWI GGATC 8 cut(s) 299, 312, 323, 416, 429, 629, 648, 686
AcoI YGGCCR 2 cut(s) 777, 1464
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 4 cut(s) 473, 672, 1030, 1229
AfaI GTAC 3 cut(s) 317, 1179, 1408
AfiI CCNNNNNNNGG 4 cut(s) 301, 418, 710, 1555
AgsI TTSAA 6 cut(s) 203, 792, 836, 875, 1012, 1147
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 1 cut(s) 472
Alw21I GWGCWC 2 cut(s) 8, 70
Alw26I GTCTC 3 cut(s) 921, 1028, 1149
AlwI GGATC 8 cut(s) 299, 312, 323, 416, 429, 629, 648, 686
AoxI GGCC 4 cut(s) 484, 777, 839, 1464
ApeKI GCWGC 3 cut(s) 796, 884, 1323
ApoI RAATTY 1 cut(s) 154
ArsI GACNNNNNNTTYG 2 cut(s) 736, 768
AseI ATTAAT 1 cut(s) 1337
Asp700I GAANNNNTTC 1 cut(s) 1550
AspLEI GCGC 1 cut(s) 1484
AspS9I GGNCC 3 cut(s) 292, 839, 1172
AsuHPI GGTGA 2 cut(s) 595, 1262
AsuII TTCGAA 1 cut(s) 755
AvaII GGWCC 2 cut(s) 292, 1172
BalI TGGCCA 2 cut(s) 779, 1466
BamHI GGATCC 2 cut(s) 304, 421
BanI GGYRCC 1 cut(s) 1121
BanII GRGCYC 1 cut(s) 70
BarI GAAGNNNNNNTAC 2 cut(s) 612, 644
Bbv12I GWGCWC 2 cut(s) 8, 70
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 3 cut(s) 783, 871, 1335
BccI CCATC 7 cut(s) 143, 433, 476, 704, 713, 949, 1439
BceAI ACGGC 2 cut(s) 1030, 1495
BciT130I CCWGG 1 cut(s) 474
BclI TGATCA 1 cut(s) 807
BcoDI GTCTC 3 cut(s) 921, 1028, 1149
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 6 cut(s) 27, 245, 378, 512, 1110, 1272
BfmI CTRYAG 2 cut(s) 177, 911
BfoI RGCGCY 1 cut(s) 1485
BisI GCNGC 3 cut(s) 797, 885, 1324
BlsI GCNGC 3 cut(s) 798, 886, 1325
Bme1390I CCNGG 1 cut(s) 474
Bme18I GGWCC 2 cut(s) 292, 1172
BmgT120I GGNCC 3 cut(s) 292, 839, 1172
BmiI GGNNCC 4 cut(s) 306, 423, 1123, 1438
BmrFI CCNGG 1 cut(s) 474
BmrI ACTGGG 1 cut(s) 970
BmsI GCATC 4 cut(s) 43, 424, 457, 1048
BmuI ACTGGG 1 cut(s) 970
BpmI CTGGAG 1 cut(s) 945
Bpu10I CCTNAGC 1 cut(s) 183
Bpu14I TTCGAA 1 cut(s) 755
BpuEI CTTGAG 1 cut(s) 1114
BsaI GGTCTC 2 cut(s) 921, 1028
BsaJI CCNNGG 2 cut(s) 816, 1053
BsaXI ACNNNNNCTCC 8 cut(s) 29, 59, 784, 814, 1034, 1064, 1524, 1554
Bsc4I CCNNNNNNNGG 4 cut(s) 301, 418, 710, 1555
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 5 cut(s) 751, 928, 965, 1175, 1549
Bse3DI GCAATG 1 cut(s) 887
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 2 cut(s) 816, 1053
BseGI GGATG 4 cut(s) 154, 193, 439, 1063
BseLI CCNNNNNNNGG 4 cut(s) 301, 418, 710, 1555
BseMI GCAATG 1 cut(s) 887
BseMII CTCAG 5 cut(s) 83, 174, 548, 552, 1157
BseNI ACTGG 5 cut(s) 751, 928, 965, 1175, 1549
BseRI GAGGAG 2 cut(s) 114, 1583
BseXI GCAGC 3 cut(s) 783, 871, 1335
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 4 cut(s) 486, 779, 841, 1466
BshNI GGYRCC 1 cut(s) 1121
BsiHKAI GWGCWC 2 cut(s) 8, 70
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 971
BslI CCNNNNNNNGG 4 cut(s) 301, 418, 710, 1555
BsmAI GTCTC 3 cut(s) 921, 1028, 1149
BsmFI GGGAC 1 cut(s) 971
BsnI GGCC 4 cut(s) 486, 779, 841, 1466
Bso31I GGTCTC 2 cut(s) 921, 1028
Bsp119I TTCGAA 1 cut(s) 755
Bsp1286I GDGCHC 2 cut(s) 8, 70
Bsp143I GATC 9 cut(s) 304, 328, 421, 496, 634, 653, 691, 807, 1621
Bsp19I CCATGG 2 cut(s) 816, 1053
BspACI CCGC 2 cut(s) 282, 1520
BspANI GGCC 4 cut(s) 486, 779, 841, 1466
BspCNI CTCAG 5 cut(s) 82, 175, 549, 551, 1158
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 4 cut(s) 306, 423, 1123, 1438
BspPI GGATC 8 cut(s) 299, 312, 323, 416, 429, 629, 648, 686
BspQI GCTCTTC 2 cut(s) 579, 757
BspT104I TTCGAA 1 cut(s) 755
BspT107I GGYRCC 1 cut(s) 1121
BspTNI GGTCTC 2 cut(s) 921, 1028
BsrDI GCAATG 1 cut(s) 887
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 5 cut(s) 751, 928, 965, 1175, 1549
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 816, 1053
BssMI GATC 9 cut(s) 304, 328, 421, 496, 634, 653, 691, 807, 1621
BssT1I CCWWGG 2 cut(s) 816, 1053
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 4 cut(s) 41, 413, 1005, 1511
Bst6I CTCTTC 4 cut(s) 579, 757, 1294, 1417
BstBI TTCGAA 1 cut(s) 755
BstC8I GCNNGC 4 cut(s) 226, 882, 894, 1575
BstDEI CTNAG 7 cut(s) 69, 183, 255, 538, 557, 1150, 1166
BstDSI CCRYGG 2 cut(s) 816, 1053
BstF5I GGATG 4 cut(s) 154, 193, 439, 1063
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 1485
BstHHI GCGC 1 cut(s) 1484
BstKTI GATC 9 cut(s) 307, 331, 424, 499, 637, 656, 694, 810, 1624
BstMAI GTCTC 3 cut(s) 921, 1028, 1149
BstMBI GATC 9 cut(s) 304, 328, 421, 496, 634, 653, 691, 807, 1621
BstMWI GCNNNNNNNGC 6 cut(s) 371, 785, 893, 1358, 1436, 1463
BstNI CCWGG 1 cut(s) 474
BstNSI RCATGY 1 cut(s) 1474
BstSCI CCNGG 1 cut(s) 472
BstSFI CTRYAG 2 cut(s) 177, 911
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 3 cut(s) 783, 871, 1335
BstX2I RGATCY 4 cut(s) 304, 421, 653, 691
BstXI CCANNNNNNTGG 1 cut(s) 954
BstYI RGATCY 4 cut(s) 304, 421, 653, 691
BsuRI GGCC 4 cut(s) 486, 779, 841, 1466
BtgI CCRYGG 2 cut(s) 816, 1053
BtsCI GGATG 4 cut(s) 154, 193, 439, 1063
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 567, 1001
Cac8I GCNNGC 4 cut(s) 226, 882, 894, 1575
CfoI GCGC 1 cut(s) 1484
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 3 cut(s) 292, 839, 1172
CsiI ACCWGGT 1 cut(s) 472
Csp6I GTAC 3 cut(s) 316, 1178, 1407
CviAII CATG 7 cut(s) 343, 607, 817, 954, 1054, 1126, 1471
CviQI GTAC 3 cut(s) 316, 1178, 1407
DdeI CTNAG 7 cut(s) 69, 183, 255, 538, 557, 1150, 1166
DpnI GATC 9 cut(s) 306, 330, 423, 498, 636, 655, 693, 809, 1623
DpnII GATC 9 cut(s) 304, 328, 421, 496, 634, 653, 691, 807, 1621
EaeI YGGCCR 2 cut(s) 777, 1464
Eam1104I CTCTTC 4 cut(s) 579, 757, 1294, 1417
EarI CTCTTC 4 cut(s) 579, 757, 1294, 1417
EciI GGCGGA 1 cut(s) 1535
Ecl136II GAGCTC 1 cut(s) 68
Eco130I CCWWGG 2 cut(s) 816, 1053
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 2 cut(s) 921, 1028
Eco32I GATATC 1 cut(s) 392
Eco47I GGWCC 2 cut(s) 292, 1172
Eco53kI GAGCTC 1 cut(s) 68
Eco57I CTGAAG 4 cut(s) 473, 672, 1030, 1229
EcoICRI GAGCTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 472
EcoRV GATATC 1 cut(s) 392
EcoT14I CCWWGG 2 cut(s) 816, 1053
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 2 cut(s) 816, 1053
FaeI CATG 7 cut(s) 346, 610, 820, 957, 1057, 1129, 1474
FaqI GGGAC 1 cut(s) 971
FatI CATG 7 cut(s) 342, 606, 816, 953, 1053, 1125, 1470
FbaI TGATCA 1 cut(s) 807
Fnu4HI GCNGC 3 cut(s) 797, 885, 1324
FokI GGATG 4 cut(s) 161, 200, 446, 1070
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 3 cut(s) 797, 885, 1324
FspBI CTAG 6 cut(s) 27, 245, 378, 512, 1110, 1272
GlaI GCGC 1 cut(s) 1483
GluI GCNGC 3 cut(s) 797, 885, 1324
GsuI CTGGAG 1 cut(s) 945
HaeII RGCGCY 1 cut(s) 1485
HaeIII GGCC 4 cut(s) 486, 779, 841, 1466
HapII CCGG 1 cut(s) 225
HhaI GCGC 1 cut(s) 1484
Hin1II CATG 7 cut(s) 346, 610, 820, 957, 1057, 1129, 1474
Hin6I GCGC 1 cut(s) 1482
HinP1I GCGC 1 cut(s) 1482
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HinfI GANTC 4 cut(s) 559, 625, 1220, 1253
HpaII CCGG 1 cut(s) 225
HphI GGTGA 2 cut(s) 595, 1262
Hpy166II GTNNAC 4 cut(s) 21, 642, 826, 1172
Hpy188I TCNGA 8 cut(s) 296, 541, 619, 663, 691, 1314, 1436, 1532
Hpy188III TCNNGA 4 cut(s) 302, 395, 1040, 1625
Hpy8I GTNNAC 4 cut(s) 21, 642, 826, 1172
HpyAV CCTTC 5 cut(s) 138, 448, 696, 869, 947
HpyCH4III ACNGT 4 cut(s) 41, 413, 1005, 1511
HpyF10VI GCNNNNNNNGC 6 cut(s) 371, 785, 893, 1358, 1436, 1463
HpyF3I CTNAG 7 cut(s) 69, 183, 255, 538, 557, 1150, 1166
Hsp92II CATG 7 cut(s) 346, 610, 820, 957, 1057, 1129, 1474
HspAI GCGC 1 cut(s) 1482
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 807
Kzo9I GATC 9 cut(s) 304, 328, 421, 496, 634, 653, 691, 807, 1621
LguI GCTCTTC 2 cut(s) 579, 757
LmnI GCTCC 6 cut(s) 65, 127, 1055, 1100, 1436, 1570
Lsp1109I GCAGC 3 cut(s) 783, 871, 1335
LweI GCATC 4 cut(s) 43, 424, 457, 1048
MabI ACCWGGT 1 cut(s) 472
MaeI CTAG 6 cut(s) 27, 245, 378, 512, 1110, 1272
MaeIII GTNAC 6 cut(s) 41, 457, 718, 994, 1066, 1600
MalI GATC 9 cut(s) 306, 330, 423, 498, 636, 655, 693, 809, 1623
MboI GATC 9 cut(s) 304, 328, 421, 496, 634, 653, 691, 807, 1621
MflI RGATCY 4 cut(s) 304, 421, 653, 691
MhlI GDGCHC 2 cut(s) 8, 70
MlsI TGGCCA 2 cut(s) 779, 1466
MluCI AATT 7 cut(s) 154, 168, 266, 1104, 1142, 1338, 1353
MluNI TGGCCA 2 cut(s) 779, 1466
MlyI GAGTC 1 cut(s) 568
MmeI TCCRAC 2 cut(s) 319, 332
Mox20I TGGCCA 2 cut(s) 779, 1466
MroNI GCCGGC 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 1550
MscI TGGCCA 2 cut(s) 779, 1466
MseI TTAA 2 cut(s) 288, 1337
MslI CAYNNNNRTG 2 cut(s) 605, 952
Msp20I TGGCCA 2 cut(s) 779, 1466
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 474
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 6 cut(s) 371, 785, 893, 1358, 1436, 1463
NaeI GCCGGC 1 cut(s) 226
NcoI CCATGG 2 cut(s) 816, 1053
NdeII GATC 9 cut(s) 304, 328, 421, 496, 634, 653, 691, 807, 1621
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 7 cut(s) 346, 610, 820, 957, 1057, 1129, 1474
NlaIV GGNNCC 4 cut(s) 306, 423, 1123, 1438
NmuCI GTSAC 3 cut(s) 457, 718, 1066
NspI RCATGY 1 cut(s) 1474
NspV TTCGAA 1 cut(s) 755
PciSI GCTCTTC 2 cut(s) 579, 757
PcsI WCGNNNNNNNCGW 2 cut(s) 675, 761
PdiI GCCGGC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 1550
PfeI GAWTC 3 cut(s) 625, 1220, 1253
PflFI GACNNNGTC 1 cut(s) 962
PkrI GCNGC 3 cut(s) 798, 886, 1325
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
PshBI ATTAAT 1 cut(s) 1337
Psp124BI GAGCTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 4 cut(s) 306, 423, 1123, 1438
PspPI GGNCC 3 cut(s) 292, 839, 1172
PsuI RGATCY 4 cut(s) 304, 421, 653, 691
PsyI GACNNNGTC 1 cut(s) 962
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 3 cut(s) 317, 1179, 1408
RsaNI GTAC 3 cut(s) 316, 1178, 1407
RseI CAYNNNNRTG 2 cut(s) 605, 952
SacI GAGCTC 1 cut(s) 70
SapI GCTCTTC 2 cut(s) 579, 757
SaqAI TTAA 2 cut(s) 288, 1337
SatI GCNGC 3 cut(s) 797, 885, 1324
Sau3AI GATC 9 cut(s) 304, 328, 421, 496, 634, 653, 691, 807, 1621
Sau96I GGNCC 3 cut(s) 292, 839, 1172
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 2 cut(s) 8, 70
SexAI ACCWGGT 1 cut(s) 472
SfaNI GCATC 4 cut(s) 43, 424, 457, 1048
SfcI CTRYAG 2 cut(s) 177, 911
SfuI TTCGAA 1 cut(s) 755
SinI GGWCC 2 cut(s) 292, 1172
SmiMI CAYNNNNRTG 2 cut(s) 605, 952
SmlI CTYRAG 1 cut(s) 1093
SmoI CTYRAG 1 cut(s) 1093
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 7 cut(s) 154, 168, 266, 1104, 1142, 1338, 1353
SsiI CCGC 2 cut(s) 282, 1520
SspI AATATT 1 cut(s) 733
SspMI CTAG 6 cut(s) 27, 245, 378, 512, 1110, 1272
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 2 cut(s) 816, 1053
TaaI ACNGT 4 cut(s) 41, 413, 1005, 1511
TaqI TCGA 4 cut(s) 755, 764, 966, 1554
TasI AATT 7 cut(s) 154, 168, 266, 1104, 1142, 1338, 1353
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 3 cut(s) 625, 1220, 1253
Tru1I TTAA 2 cut(s) 288, 1337
Tru9I TTAA 2 cut(s) 288, 1337
TscAI CASTG 2 cut(s) 574, 1008
TseFI GTSAC 3 cut(s) 457, 718, 1066
TseI GCWGC 3 cut(s) 796, 884, 1323
Tsp45I GTSAC 3 cut(s) 457, 718, 1066
TspDTI ATGAA 6 cut(s) 600, 743, 1176, 1281, 1520, 1559
TspGWI ACGGA 1 cut(s) 627
TspRI CASTG 2 cut(s) 574, 1008
Tth111I GACNNNGTC 1 cut(s) 962
VpaK11BI GGWCC 2 cut(s) 292, 1172
VspI ATTAAT 1 cut(s) 1337
XapI RAATTY 1 cut(s) 154
XceI RCATGY 1 cut(s) 1474
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 1550
XspI CTAG 6 cut(s) 27, 245, 378, 512, 1110, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.