Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000236.1

Orthogroup ID

OG0001437

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 935

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000236.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

tctgtcataatcaatccctccggcgccgtgttcgtgagcaacagcgtaagaatcttcccagccttgaagaaaaactgttacaccatcccagttgacaaagctggccaaagaattctggctcgagcaagtttcttttattggggcttttatgttaataagacttctcccacctttgagctccagtttgacggcaactactggaccaccgttaacaaacccaatattgtttcttatgaggcaatctatgttgccaagcagaatacgactagcatatgtcttgctcgaattgaagatgatcagatcccaagtatgttttatgatggtggaaatcaaactctcaggtatccagatgatgtatatgatcgaatttgggtgccgcagattggttttggatcaattactgtgagcgtgaaaggtagcggtgggagcaggcttccagacgataagaacgtaccaatttacatcacaacttgcttttctgaagttgacaaaacgatcaaaagatccctacaattttcgatagacagcaagccttatgatcgacctgtggttccaccttttggaagcgtagccgtagtgtacattaccaacatgacggcatcttctaacactagtttcagcatacaggcagctgctgattcctcgattcctcccctcatcaatgcctatgaagtttataccatcactggacctctagcacaagcaaccaactctaaagatggtacatcgctaattcgtttcaactgcggcatatgtaactgcataatggtttatgactttatggtatggtttaggtgcctgattgatcgatcatcaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

273

Amino Acids

30.39

Weight (kDa)

8.08

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24485 AT1G24485 AT1G24485 AT1G24485 AT3G46240 AT3G46260 AT3G46270 AT3G46270 AT3G46280
fragaria_vesca	FvH4_3g34600 FvH4_3g34600 FvH4_3g34610 FvH4_3g34610 FvH4_7g34060 FvH4_7g34060
malus_domestica	MD06G1235100.v1.1 MD11G1117200.v1.1
prunus_persica	Prupe.2G327000_v2.0.a1 Prupe.2G327000_v2.0.a1 Prupe.5G239900_v2.0.a1 Prupe.6G087500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0062321 RchiOBHm_Chr7g0177641 RchiOBHm_Chr7g0177651
rosa_laevigata	RLG00000005517 RLG00000026048 RLG00000035549
rosa_multiflora	Rmu_sc0006298.1_g000001 Rmu_ssc0000236.1_g000001 Rmu_ssc0000409.1_g000030 Rmu_ssc0000409.1_g000031
rosa_roxburghii	Rroxscaffold_1G00018380 Rroxscaffold_3G00275690 Rroxscaffold_3G00275700 Rroxscaffold_4G00276770
rosa_rugosa	Rorug01G0446900 Rorug05G0348200 Rorug05G0348300 Rorug06G0408300
rosa_samantha	Rh1CG442900 Rh5AG408300 Rh5BG422000 Rh5CG446000 Rh5DG437000 Rh7AG007700 Rh7BG007500 Rh7BG007600 Rh7CG008100 Rh7DG007800
rosa_wichuraiana	Rw0G008230 Rw5G038470 Rw7G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	23, 373, 795
AccB7I	CCANNNNNTGG	1 cut(s)	560
AciI	CCGC	3 cut(s)	377, 420, 747
AclWI	GGATC	3 cut(s)	295, 400, 498
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	2 cut(s)	111, 366
AcuI	CTGAAG	1 cut(s)	501
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	3 cut(s)	453, 581, 724
AfiI	CCNNNNNNNGG	2 cut(s)	383, 560
AgsI	TTSAA	3 cut(s)	67, 290, 742
AhlI	ACTAGT	1 cut(s)	611
AluBI	AGCT	3 cut(s)	101, 178, 632
AluI	AGCT	3 cut(s)	101, 178, 632
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	3 cut(s)	295, 400, 498
AlwNI	CAGNNNCTG	1 cut(s)	635
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	629, 632
ApoI	RAATTY	2 cut(s)	111, 366
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	201, 689
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	201, 689
BalI	TGGCCA	1 cut(s)	105
BanI	GGYRCC	3 cut(s)	23, 373, 795
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	619, 641
BccI	CCATC	4 cut(s)	92, 314, 689, 713
BceAI	ACGGC	4 cut(s)	11, 205, 557, 612
BciVI	GTATCC	1 cut(s)	354
BclI	TGATCA	1 cut(s)	295
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	3 cut(s)	267, 612, 695
BfoI	RGCGCY	1 cut(s)	27
BfuI	GTATCC	1 cut(s)	354
BisI	GCNGC	4 cut(s)	377, 630, 633, 748
BlsI	GCNGC	4 cut(s)	378, 631, 634, 749
Bme18I	GGWCC	2 cut(s)	201, 689
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	201, 689
BmiI	GGNNCC	4 cut(s)	25, 375, 552, 797
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	608
BmuI	ACTGGG	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	808
BsaHI	GRCGYC	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 560
Bse1I	ACTGG	4 cut(s)	89, 181, 203, 691
BseCI	ATCGAT	1 cut(s)	808
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	383, 560
BseMII	CTCAG	1 cut(s)	352
BseNI	ACTGG	4 cut(s)	89, 181, 203, 691
BseXI	GCAGC	2 cut(s)	619, 641
BseYI	CCCAGC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	3 cut(s)	23, 373, 795
BshVI	ATCGAT	1 cut(s)	808
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	383, 560
BsnI	GGCC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	9 cut(s)	295, 300, 361, 392, 495, 503, 538, 805, 809
BspACI	CCGC	3 cut(s)	377, 420, 747
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	351
BspDI	ATCGAT	1 cut(s)	808
BspLI	GGNNCC	4 cut(s)	25, 375, 552, 797
BspPI	GGATC	3 cut(s)	295, 400, 498
BspT107I	GGYRCC	3 cut(s)	23, 373, 795
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	4 cut(s)	89, 181, 203, 691
BssMI	GATC	9 cut(s)	295, 300, 361, 392, 495, 503, 538, 805, 809
BssNI	GRCGYC	1 cut(s)	24
Bst4CI	ACNGT	3 cut(s)	77, 208, 403
BstACI	GRCGYC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	103, 431, 530
BstDEI	CTNAG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	9 cut(s)	298, 303, 364, 395, 498, 506, 541, 808, 812
BstMBI	GATC	9 cut(s)	295, 300, 361, 392, 495, 503, 538, 805, 809
BstMWI	GCNNNNNNNGC	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	619, 641
BstX2I	RGATCY	2 cut(s)	300, 503
BstYI	RGATCY	2 cut(s)	300, 503
Bsu15I	ATCGAT	1 cut(s)	808
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	105
BsuTUI	ATCGAT	1 cut(s)	808
BtgZI	GCGATG	1 cut(s)	711
BtsCI	GGATG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	3 cut(s)	103, 431, 530
CaiI	CAGNNNCTG	1 cut(s)	635
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	201, 689
ClaI	ATCGAT	1 cut(s)	808
Csp6I	GTAC	3 cut(s)	452, 580, 723
CviAII	CATG	1 cut(s)	592
CviQI	GTAC	3 cut(s)	452, 580, 723
DdeI	CTNAG	1 cut(s)	338
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	9 cut(s)	297, 302, 363, 394, 497, 505, 540, 807, 811
DpnII	GATC	9 cut(s)	295, 300, 361, 392, 495, 503, 538, 805, 809
EaeI	YGGCCR	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	201, 689
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	180
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
FaeI	CATG	1 cut(s)	595
FatI	CATG	1 cut(s)	591
FauNDI	CATATG	2 cut(s)	272, 752
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	4 cut(s)	377, 630, 633, 748
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	4 cut(s)	377, 630, 633, 748
FspBI	CTAG	3 cut(s)	267, 612, 695
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	4 cut(s)	377, 630, 633, 748
GsaI	CCCAGC	1 cut(s)	62
GsuI	CTGGAG	1 cut(s)	164
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	595
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	3 cut(s)	94, 211, 487
HindII	GTYRAC	3 cut(s)	94, 211, 487
HinfI	GANTC	3 cut(s)	51, 638, 646
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	21
Hpy166II	GTNNAC	4 cut(s)	94, 211, 487, 580
Hpy188I	TCNGA	3 cut(s)	300, 481, 821
Hpy188III	TCNNGA	3 cut(s)	34, 347, 437
Hpy8I	GTNNAC	4 cut(s)	94, 211, 487, 580
HpyCH4III	ACNGT	3 cut(s)	77, 208, 403
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	1 cut(s)	762
HpyF10VI	GCNNNNNNNGC	1 cut(s)	426
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	595
HspAI	GCGC	1 cut(s)	24
KasI	GGCGCC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	295
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	9 cut(s)	295, 300, 361, 392, 495, 503, 538, 805, 809
LmnI	GCTCC	2 cut(s)	183, 426
Lsp1109I	GCAGC	2 cut(s)	619, 641
LweI	GCATC	1 cut(s)	608
MaeI	CTAG	3 cut(s)	267, 612, 695
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	2 cut(s)	77, 755
MalI	GATC	9 cut(s)	297, 302, 363, 394, 497, 505, 540, 807, 811
MboI	GATC	9 cut(s)	295, 300, 361, 392, 495, 503, 538, 805, 809
MboII	GAAGA	4 cut(s)	46, 79, 302, 594
MflI	RGATCY	2 cut(s)	300, 503
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	7 cut(s)	111, 285, 366, 396, 456, 512, 732
MluNI	TGGCCA	1 cut(s)	105
Mly113I	GGCGCC	1 cut(s)	24
MnlI	CCTC	6 cut(s)	28, 229, 652, 660, 665, 702
Mox20I	TGGCCA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	2 cut(s)	153, 210
Msp20I	TGGCCA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	426
NarI	GGCGCC	1 cut(s)	24
NdeI	CATATG	2 cut(s)	272, 752
NdeII	GATC	9 cut(s)	295, 300, 361, 392, 495, 503, 538, 805, 809
NlaIII	CATG	1 cut(s)	595
NlaIV	GGNNCC	4 cut(s)	25, 375, 552, 797
PaeR7I	CTCGAG	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PfeI	GAWTC	3 cut(s)	51, 638, 646
PflMI	CCANNNNNTGG	1 cut(s)	560
PkrI	GCNGC	4 cut(s)	378, 631, 634, 749
PluTI	GGCGCC	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	180
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	4 cut(s)	25, 375, 552, 797
PspPI	GGNCC	2 cut(s)	201, 689
PspXI	VCTCGAGB	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	300, 503
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	3 cut(s)	453, 581, 724
RsaNI	GTAC	3 cut(s)	452, 580, 723
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	153, 210
SatI	GCNGC	4 cut(s)	377, 630, 633, 748
Sau3AI	GATC	9 cut(s)	295, 300, 361, 392, 495, 503, 538, 805, 809
Sau96I	GGNCC	2 cut(s)	201, 689
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	1 cut(s)	608
SfoI	GGCGCC	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	2 cut(s)	201, 689
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
SpeI	ACTAGT	1 cut(s)	611
Sse9I	AATT	7 cut(s)	111, 285, 366, 396, 456, 512, 732
SsiI	CCGC	3 cut(s)	377, 420, 747
SspDI	GGCGCC	1 cut(s)	23
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	3 cut(s)	267, 612, 695
SstI	GAGCTC	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	77, 208, 403
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	7 cut(s)	121, 283, 364, 518, 541, 644, 808
TasI	AATT	7 cut(s)	111, 285, 366, 396, 456, 512, 732
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	2 cut(s)	379, 750
TfiI	GAWTC	3 cut(s)	51, 638, 646
Tru1I	TTAA	2 cut(s)	153, 210
Tru9I	TTAA	2 cut(s)	153, 210
TscAI	CASTG	1 cut(s)	691
TseI	GCWGC	2 cut(s)	629, 632
TspDTI	ATGAA	1 cut(s)	684
TspRI	CASTG	1 cut(s)	691
Van91I	CCANNNNNTGG	1 cut(s)	560
VpaK11BI	GGWCC	2 cut(s)	201, 689
XapI	RAATTY	2 cut(s)	111, 366
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	3 cut(s)	267, 612, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.