Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001437

Physical Location & Seq

Genomic Coordinates Reverse (-)

67055644 .. 67056341

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGACGGCATCTTCTAACACTAGTTTCAGCATACAGGCAGCTGCTGATTCCTCGATTCCTCCCCTCATCAATGCCTATGAAGTTTATAGCATCACTGGACCTCTAGCACAAGCAACCAACACTAAAGATGTGGAAGGACTAGCAGCACTGCAAAGGGGATTCGATGTACTAGAGAAATGGAGTGGGGATCCTTGTCTTCCACCATCATTTGCATGGGAATGGGTTCAATGTTTGCATGCTGATCCCGCTCCTCGTGTTATATCACTTGATTTGCACAATAACAGCTTGGATGGAGCTATTCCTGGTTTTCTGGGCTCCATATCTGATCTCAAACTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

113

Amino Acids

12.03

Weight (kDa)

4.35

Isoelectric Point (pI)

20.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24485 AT1G24485 AT1G24485 AT1G24485 AT3G46240 AT3G46260 AT3G46270 AT3G46270 AT3G46280
fragaria_vesca	FvH4_3g34600 FvH4_3g34600 FvH4_3g34610 FvH4_3g34610 FvH4_7g34060 FvH4_7g34060
malus_domestica	MD06G1235100.v1.1 MD11G1117200.v1.1
prunus_persica	Prupe.2G327000_v2.0.a1 Prupe.2G327000_v2.0.a1 Prupe.5G239900_v2.0.a1 Prupe.6G087500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0062321 RchiOBHm_Chr7g0177641 RchiOBHm_Chr7g0177651
rosa_laevigata	RLG00000005517 RLG00000026048 RLG00000035549
rosa_multiflora	Rmu_sc0006298.1_g000001 Rmu_ssc0000236.1_g000001 Rmu_ssc0000409.1_g000030 Rmu_ssc0000409.1_g000031
rosa_roxburghii	Rroxscaffold_1G00018380 Rroxscaffold_3G00275690 Rroxscaffold_3G00275700 Rroxscaffold_4G00276770
rosa_rugosa	Rorug01G0446900 Rorug05G0348200 Rorug05G0348300 Rorug06G0408300
rosa_samantha	Rh1CG442900 Rh5AG408300 Rh5BG422000 Rh5CG446000 Rh5DG437000 Rh7AG007700 Rh7BG007500 Rh7BG007600 Rh7CG008100 Rh7DG007800
rosa_wichuraiana	Rw0G008230 Rw5G038470 Rw7G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	248
AciI	CCGC	1 cut(s)	246
AclWI	GGATC	3 cut(s)	182, 195, 236
AfaI	GTAC	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	227
AhlI	ACTAGT	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	3 cut(s)	41, 285, 296
AluI	AGCT	3 cut(s)	41, 285, 296
AlwI	GGATC	3 cut(s)	182, 195, 236
AlwNI	CAGNNNCTG	1 cut(s)	44
ApeKI	GCWGC	3 cut(s)	38, 41, 143
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	317
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	3 cut(s)	28, 50, 155
BccI	CCATC	2 cut(s)	211, 284
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	303
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	4 cut(s)	21, 104, 140, 170
BisI	GCNGC	3 cut(s)	39, 42, 144
BlsI	GCNGC	3 cut(s)	40, 43, 145
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	189, 316
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	2 cut(s)	17, 99
BpiI	GAAGAC	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	295
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	3 cut(s)	28, 50, 155
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	187, 241, 325
BspACI	CCGC	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	189, 316
BspPI	GGATC	3 cut(s)	182, 195, 236
BsrBI	CCGCTC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	3 cut(s)	187, 241, 325
BssSI	CACGAG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	3 cut(s)	190, 244, 328
BstMBI	GATC	3 cut(s)	187, 241, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	301
BstV1I	GCAGC	3 cut(s)	28, 50, 155
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	93, 146
Cac8I	GCNNGC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	2 cut(s)	213, 236
CviJI	RGCY	4 cut(s)	41, 285, 296, 315
CviKI_1	RGCY	4 cut(s)	41, 285, 296, 315
CviQI	GTAC	1 cut(s)	167
DpnI	GATC	3 cut(s)	189, 243, 327
DpnII	GATC	3 cut(s)	187, 241, 325
Eco24I	GRGCYC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	317
FaeI	CATG	2 cut(s)	216, 239
FaiI	YATR	7 cut(s)	32, 78, 87, 214, 237, 260, 320
FatI	CATG	2 cut(s)	212, 235
FauI	CCCGC	1 cut(s)	253
Fnu4HI	GCNGC	3 cut(s)	39, 42, 144
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	3 cut(s)	39, 42, 144
FspBI	CTAG	4 cut(s)	21, 104, 140, 170
GluI	GCNGC	3 cut(s)	39, 42, 144
Hin1II	CATG	2 cut(s)	216, 239
HinfI	GANTC	3 cut(s)	47, 55, 159
Hpy188I	TCNGA	1 cut(s)	325
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4V	TGCA	4 cut(s)	151, 212, 235, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	216, 239
Kzo9I	GATC	3 cut(s)	187, 241, 325
LmnI	GCTCC	3 cut(s)	253, 293, 320
LpnPI	CCDG	5 cut(s)	20, 81, 288, 296, 315
Lsp1109I	GCAGC	3 cut(s)	28, 50, 155
LweI	GCATC	2 cut(s)	17, 99
MaeI	CTAG	4 cut(s)	21, 104, 140, 170
MalI	GATC	3 cut(s)	189, 243, 327
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	3 cut(s)	187, 241, 325
MboII	GAAGA	2 cut(s)	3, 188
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	317
MnlI	CCTC	5 cut(s)	61, 69, 74, 111, 261
MroXI	GAANNNNTTC	1 cut(s)	222
MslI	CAYNNNNRTG	2 cut(s)	211, 217
MspA1I	CMGCKG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	3 cut(s)	187, 241, 325
NlaIII	CATG	2 cut(s)	216, 239
NlaIV	GGNNCC	2 cut(s)	189, 316
NspI	RCATGY	1 cut(s)	239
PaeI	GCATGC	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	47, 55, 159
PkrI	GCNGC	3 cut(s)	40, 43, 145
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	189, 316
PspPI	GGNCC	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	2 cut(s)	211, 217
SatI	GCNGC	3 cut(s)	39, 42, 144
Sau3AI	GATC	3 cut(s)	187, 241, 325
Sau96I	GGNCC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	4 cut(s)	43, 103, 287, 298
SfaNI	GCATC	2 cut(s)	17, 99
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	2 cut(s)	211, 217
SpeI	ACTAGT	1 cut(s)	20
SphI	GCATGC	1 cut(s)	239
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	4 cut(s)	21, 104, 140, 170
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	53, 162
TatI	WGTACW	1 cut(s)	166
TfiI	GAWTC	3 cut(s)	47, 55, 159
TscAI	CASTG	2 cut(s)	100, 153
TseI	GCWGC	3 cut(s)	38, 41, 143
TspDTI	ATGAA	1 cut(s)	93
TspRI	CASTG	2 cut(s)	100, 153
VpaK11BI	GGWCC	1 cut(s)	98
XceI	RCATGY	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	4 cut(s)	21, 104, 140, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.