Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001437

Physical Location & Seq

Genomic Coordinates Forward (+)

452507 .. 453181

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG007600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGATGCGCTGCAGACAATTGATTTGCACAATAACAGCTTGGATGGAGCTATTCCTGGTTTTCTGGGCTCCATATCCGATCTCAAACTACTGGATTTGTCGGACAATAGACTGAATGGATCTATACCCAGCTCTCTCTCAAATAATAAGAACTTGAAATTAGTTGTAAGCGGGAACTGTCTCTCGGGAATGTCATGTTCACCGGCTTCTGTATCAGCACCACCCTCACCAGGACTACAAACACCTGCTCCCGGCGGCCCTAACCCAAACCCAATTCATACACCCTCTTCAGTAGACAAGGAGTTTAGTGGCAAGCTACAGATAATACTACTCCTAGGAGCCATTATTCACTTCTCTCTTCAGCTTTTAACAGATTGGAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

128

Amino Acids

13.34

Weight (kDa)

5.77

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	4 - 59	5.2e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24485 AT1G24485 AT1G24485 AT1G24485 AT3G46240 AT3G46260 AT3G46270 AT3G46270 AT3G46280
fragaria_vesca	FvH4_3g34600 FvH4_3g34600 FvH4_3g34610 FvH4_3g34610 FvH4_7g34060 FvH4_7g34060
malus_domestica	MD06G1235100.v1.1 MD11G1117200.v1.1
prunus_persica	Prupe.2G327000_v2.0.a1 Prupe.2G327000_v2.0.a1 Prupe.5G239900_v2.0.a1 Prupe.6G087500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0062321 RchiOBHm_Chr7g0177641 RchiOBHm_Chr7g0177651
rosa_laevigata	RLG00000005517 RLG00000026048 RLG00000035549
rosa_multiflora	Rmu_sc0006298.1_g000001 Rmu_ssc0000236.1_g000001 Rmu_ssc0000409.1_g000030 Rmu_ssc0000409.1_g000031
rosa_roxburghii	Rroxscaffold_1G00018380 Rroxscaffold_3G00275690 Rroxscaffold_3G00275700 Rroxscaffold_4G00276770
rosa_rugosa	Rorug01G0446900 Rorug05G0348200 Rorug05G0348300 Rorug06G0408300
rosa_samantha	Rh1CG442900 Rh5AG408300 Rh5BG422000 Rh5CG446000 Rh5DG437000 Rh7AG007700 Rh7BG007500 Rh7BG007600 Rh7CG008100 Rh7DG007800
rosa_wichuraiana	Rw0G008230 Rw5G038470 Rw7G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	253
Acc36I	ACCTGC	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	2 cut(s)	171, 255
AclWI	GGATC	1 cut(s)	127
AcuI	CTGAAG	2 cut(s)	273, 344
AfiI	CCNNNNNNNGG	2 cut(s)	230, 251
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	55, 229
AluBI	AGCT	5 cut(s)	39, 50, 132, 316, 364
AluI	AGCT	5 cut(s)	39, 50, 132, 316, 364
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
AspA2I	CCTAGG	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	192, 219
AvaI	CYCGRG	1 cut(s)	184
AvrII	CCTAGG	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	71
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	2 cut(s)	57, 231
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	2 cut(s)	11, 317
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	2 cut(s)	11, 256
BlnI	CCTAGG	1 cut(s)	334
BlsI	GCNGC	2 cut(s)	12, 257
Bme1390I	CCNGG	3 cut(s)	57, 231, 252
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	70, 340
BmrFI	CCNGG	3 cut(s)	57, 231, 252
BpuMI	CCSGG	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 251
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	57, 231
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	10, 49
BseLI	CCNNNNNNNGG	2 cut(s)	230, 251
BseNI	ACTGG	1 cut(s)	96
BseYI	CCCAGC	1 cut(s)	128
BshFI	GGCC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	203, 252
BslI	CCNNNNNNNGG	2 cut(s)	230, 251
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	79, 119
BspACI	CCGC	2 cut(s)	171, 255
BspANI	GGCC	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	70, 340
BspMAI	CTGCAG	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	2 cut(s)	79, 119
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	57, 231
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	2 cut(s)	292, 363
BstC8I	GCNNGC	1 cut(s)	314
BstF5I	GGATG	2 cut(s)	10, 49
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	82, 122
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	79, 119
BstNI	CCWGG	2 cut(s)	57, 231
BstSCI	CCNGG	3 cut(s)	55, 229, 250
BstSFI	CTRYAG	2 cut(s)	11, 317
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	10, 49
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	314
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	257
CviAII	CATG	1 cut(s)	195
CviJI	RGCY	9 cut(s)	39, 50, 69, 132, 206, 258, 316, 341, 364
CviKI_1	RGCY	9 cut(s)	39, 50, 69, 132, 206, 258, 316, 341, 364
DpnI	GATC	2 cut(s)	81, 121
DpnII	GATC	2 cut(s)	79, 119
Eam1104I	CTCTTC	2 cut(s)	292, 363
EarI	CTCTTC	2 cut(s)	292, 363
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	71
Eco57I	CTGAAG	2 cut(s)	273, 344
Eco88I	CYCGRG	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	55, 229
EcoT14I	CCWWGG	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	1 cut(s)	198
FaiI	YATR	4 cut(s)	74, 125, 196, 279
FatI	CATG	1 cut(s)	194
FauI	CCCGC	1 cut(s)	164
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	11, 256
FokI	GGATG	2 cut(s)	17, 56
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	11, 256
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	2 cut(s)	11, 256
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	2 cut(s)	203, 252
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	1 cut(s)	198
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HpaII	CCGG	2 cut(s)	203, 252
HphI	GGTGA	2 cut(s)	192, 219
Hpy166II	GTNNAC	2 cut(s)	200, 295
Hpy188I	TCNGA	2 cut(s)	79, 103
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	2 cut(s)	200, 295
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	2 cut(s)	13, 28
Hsp92II	CATG	1 cut(s)	198
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	79, 119
LmnI	GCTCC	4 cut(s)	47, 74, 253, 338
MaeI	CTAG	1 cut(s)	335
MalI	GATC	2 cut(s)	81, 121
MboI	GATC	2 cut(s)	79, 119
MboII	GAAGA	2 cut(s)	279, 350
MfeI	CAATTG	1 cut(s)	18
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	3 cut(s)	18, 158, 273
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	2 cut(s)	235, 295
MseI	TTAA	1 cut(s)	368
MspI	CCGG	2 cut(s)	203, 252
MspR9I	CCNGG	3 cut(s)	57, 231, 252
MunI	CAATTG	1 cut(s)	18
MvaI	CCWGG	2 cut(s)	57, 231
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	79, 119
NlaIII	CATG	1 cut(s)	198
NlaIV	GGNNCC	2 cut(s)	70, 340
PaqCI	CACCTGC	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	12, 257
Psp6I	CCWGG	2 cut(s)	55, 229
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	2 cut(s)	55, 229
PspN4I	GGNNCC	2 cut(s)	70, 340
PspPI	GGNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	2 cut(s)	11, 256
Sau3AI	GATC	2 cut(s)	79, 119
Sau96I	GGNCC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	57, 231, 252
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	6 cut(s)	41, 52, 134, 247, 318, 366
SfcI	CTRYAG	2 cut(s)	11, 317
Sse9I	AATT	3 cut(s)	18, 158, 273
SsiI	CCGC	2 cut(s)	171, 255
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	3 cut(s)	55, 229, 250
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	179
TasI	AATT	3 cut(s)	18, 158, 273
TauI	GCSGC	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	266
XmaJI	CCTAGG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.