Rorug05G0348200

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001437
Physical Location & Seq
Forward (+)
43136642 .. 43138979
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0348200.1

Sequence Viewer

Length: 537 bp
ATGGCGAGGTACGATAGGGCCATTACAGTTTTTTCTCCCGACGACCAGCTCTTCCAGGTCGAGTACACCCTCGAAGCCGTGCGAAAGGGTAACGCCACCATAGGCGTCTGTGGCACCGACACCATCGTTCTCGGCGTCGAGAAGAAGTCCACCGCCAAGCTTGTCAGGACTCCAGGGAATTATAACCTATACATACTCATATATATCTTCCGCTTTTGCTGTGACATGCGCTCAGAACTGGAGCCTGGAGCCTCAAGTTTGAAGCCTGAAGAGAGCAAAGCTAAAGTAGTCGTAAAATGGAGAGTAGTGAAGGAGAAGAGGTTTCCTATCATTAAAGGCATCACTCCCCAGTCCAAAGTTGACTCTTTTTACCAATCCCACACCGAAAAGCATCAACAAATCCAATTGGTCCTGACCAGGAGCATAGAGTACCTCATGGTTCCATTGGTGCAGCAGCTGGTCATCGAGCCATTGCTCAGAGTAATGCTGAGGAAATTTCTGAAGCTTTGTTTCAATACTCTGCACCATAGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

178

Amino Acids

20.56

Weight (kDa)

9.56

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome_A_N PF10584 4 - 26 3e-08 Proteasome subunit A N-terminal signature
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AarI CACCTGC 1 cut(s) 522
Acc36I ACCTGC 1 cut(s) 522
AccB1I GGYRCC 1 cut(s) 113
AciI CCGC 2 cut(s) 153, 211
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 2 cut(s) 288, 521
AcyI GRCGYC 2 cut(s) 105, 135
AfaI GTAC 3 cut(s) 11, 65, 431
AgsI TTSAA 2 cut(s) 262, 514
AjnI CCWGG 4 cut(s) 54, 172, 244, 416
AluBI AGCT 5 cut(s) 49, 160, 281, 457, 505
AluI AGCT 5 cut(s) 49, 160, 281, 457, 505
AlwNI CAGNNNCTG 1 cut(s) 457
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 451, 454
ApoI RAATTY 1 cut(s) 494
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 18, 409
AvaII GGWCC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 113
BbvCI CCTCAGC 1 cut(s) 488
BbvI GCAGC 2 cut(s) 463, 466
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 4 cut(s) 56, 174, 246, 418
BfuAI ACCTGC 1 cut(s) 522
BisI GCNGC 2 cut(s) 452, 455
BlsI GCNGC 2 cut(s) 453, 456
Bme1390I CCNGG 4 cut(s) 56, 174, 246, 418
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 2 cut(s) 18, 409
BmiI GGNNCC 4 cut(s) 115, 243, 250, 441
BmrFI CCNGG 4 cut(s) 56, 174, 246, 418
BmrI ACTGGG 1 cut(s) 343
BmsI GCATC 2 cut(s) 348, 400
BmuI ACTGGG 1 cut(s) 343
BpmI CTGGAG 3 cut(s) 156, 260, 267
Bpu10I CCTNAGC 1 cut(s) 488
BpuEI CTTGAG 1 cut(s) 238
BsaHI GRCGYC 2 cut(s) 105, 135
BsaJI CCNNGG 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bse1I ACTGG 2 cut(s) 243, 349
Bse3DI GCAATG 1 cut(s) 470
BseBI CCWGG 4 cut(s) 56, 174, 246, 418
BseDI CCNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 470
BseMII CTCAG 3 cut(s) 246, 479, 490
BseNI ACTGG 2 cut(s) 243, 349
BseXI GCAGC 2 cut(s) 463, 466
BsgI GTGCAG 2 cut(s) 470, 506
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 113
BsnI GGCC 1 cut(s) 20
BspACI CCGC 2 cut(s) 153, 211
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 3 cut(s) 245, 480, 489
BspLI GGNNCC 4 cut(s) 115, 243, 250, 441
BspMI ACCTGC 1 cut(s) 522
BspQI GCTCTTC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 470
BsrI ACTGG 2 cut(s) 243, 349
BssECI CCNNGG 1 cut(s) 173
BssNI GRCGYC 2 cut(s) 105, 135
Bst2UI CCWGG 4 cut(s) 56, 174, 246, 418
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 3 cut(s) 56, 264, 311
BstACI GRCGYC 2 cut(s) 105, 135
BstDEI CTNAG 3 cut(s) 232, 476, 488
BstHHI GCGC 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstNI CCWGG 4 cut(s) 56, 174, 246, 418
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 4 cut(s) 54, 172, 244, 416
BstV1I GCAGC 2 cut(s) 463, 466
BsuRI GGCC 1 cut(s) 20
BveI ACCTGC 1 cut(s) 522
CaiI CAGNNNCTG 1 cut(s) 457
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 18, 409
CseI GACGC 2 cut(s) 94, 124
Csp6I GTAC 3 cut(s) 10, 64, 430
CviAII CATG 2 cut(s) 226, 436
CviQI GTAC 3 cut(s) 10, 64, 430
DdeI CTNAG 3 cut(s) 232, 476, 488
Eam1104I CTCTTC 3 cut(s) 56, 264, 311
EarI CTCTTC 3 cut(s) 56, 264, 311
Eco47I GGWCC 1 cut(s) 409
Eco57I CTGAAG 2 cut(s) 288, 521
EcoRII CCWGG 4 cut(s) 54, 172, 244, 416
FaeI CATG 2 cut(s) 229, 439
FatI CATG 2 cut(s) 225, 435
Fnu4HI GCNGC 2 cut(s) 452, 455
Fsp4HI GCNGC 2 cut(s) 452, 455
GlaI GCGC 1 cut(s) 230
GluI GCNGC 2 cut(s) 452, 455
GsuI CTGGAG 3 cut(s) 156, 260, 267
HaeIII GGCC 1 cut(s) 20
HgaI GACGC 2 cut(s) 94, 124
HhaI GCGC 1 cut(s) 231
Hin1I GRCGYC 2 cut(s) 105, 135
Hin1II CATG 2 cut(s) 229, 439
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 2 cut(s) 158, 503
HinfI GANTC 2 cut(s) 169, 362
Hpy166II GTNNAC 3 cut(s) 66, 150, 361
Hpy188I TCNGA 3 cut(s) 235, 479, 501
Hpy188III TCNNGA 4 cut(s) 38, 139, 166, 412
Hpy8I GTNNAC 3 cut(s) 66, 150, 361
Hpy99I CGWCG 2 cut(s) 44, 140
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 451, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpyF3I CTNAG 3 cut(s) 232, 476, 488
Hsp92I GRCGYC 2 cut(s) 105, 135
Hsp92II CATG 2 cut(s) 229, 439
HspAI GCGC 1 cut(s) 229
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 3 cut(s) 241, 248, 420
Lsp1109I GCAGC 2 cut(s) 463, 466
LweI GCATC 2 cut(s) 348, 400
MaeIII GTNAC 2 cut(s) 89, 221
MboII GAAGA 5 cut(s) 43, 154, 199, 281, 328
MfeI CAATTG 1 cut(s) 404
MluCI AATT 3 cut(s) 178, 404, 494
MlyI GAGTC 2 cut(s) 163, 356
MnlI CCTC 5 cut(s) 80, 262, 312, 443, 483
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 457
MspR9I CCNGG 4 cut(s) 56, 174, 246, 418
MunI CAATTG 1 cut(s) 404
MvaI CCWGG 4 cut(s) 56, 174, 246, 418
MwoI GCNNNNNNNGC 1 cut(s) 111
NlaIII CATG 2 cut(s) 229, 439
NlaIV GGNNCC 4 cut(s) 115, 243, 250, 441
NmeAIII GCCGAG 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 1 cut(s) 229
PaqCI CACCTGC 1 cut(s) 522
PciSI GCTCTTC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PkrI GCNGC 2 cut(s) 453, 456
PleI GAGTC 2 cut(s) 163, 356
PpsI GAGTC 2 cut(s) 163, 356
PsiI TTATAA 1 cut(s) 183
Psp6I CCWGG 4 cut(s) 54, 172, 244, 416
PspGI CCWGG 4 cut(s) 54, 172, 244, 416
PspN4I GGNNCC 4 cut(s) 115, 243, 250, 441
PspPI GGNCC 2 cut(s) 18, 409
PstNI CAGNNNCTG 1 cut(s) 457
PvuII CAGCTG 1 cut(s) 457
RsaI GTAC 3 cut(s) 11, 65, 431
RsaNI GTAC 3 cut(s) 10, 64, 430
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 452, 455
Sau96I GGNCC 2 cut(s) 18, 409
SchI GAGTC 2 cut(s) 163, 356
ScrFI CCNGG 4 cut(s) 56, 174, 246, 418
SfaNI GCATC 2 cut(s) 348, 400
SinI GGWCC 1 cut(s) 409
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 3 cut(s) 178, 404, 494
SsiI CCGC 2 cut(s) 153, 211
StyD4I CCNGG 4 cut(s) 54, 172, 244, 416
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 4 cut(s) 60, 72, 138, 465
TasI AATT 3 cut(s) 178, 404, 494
TatI WGTACW 1 cut(s) 63
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 2 cut(s) 451, 454
Tsp45I GTSAC 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 1 cut(s) 494
XceI RCATGY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.