Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001437

Physical Location & Seq

Genomic Coordinates Forward (+)

526543 .. 527177

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15826

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTACAGCCATGTCGATCCCAAGTATGCTCTTCTGTTGGCAAATAGGTTTTATGATGGTGGAAATCAAACTCTCAGGTATCCAGATGATGCATATGATCGAATTTGGGTGCCGCAGACTGGTTTTGGATCAATTACTGTGAGCGTGAAAGGTAACGGTGGGAGCAGGCTTCCAGACGATAAGAACGTACCAATTTACATCACAACTTACTTTTCTGAAGTTGACAAAACGATCAAAAGATCCCTACAATTTTCGATAGACAGCAAGCCTTATGATCGACCTGTGGTTCCACCTTTTGGAAGCGTAGCCGTAGCGTACATTACCAACATGACGGCATCTTCTAACACTAGTTTCAGCATACAGGCAGCTGCTGATTCCTCGATTCCTCCCCTCATCAATGCCTATGAAGTTTATACCATCACTGGACCTCTAGCACAAGCAACCAACTCTAAAGATGGTACATCGCTAATTCGTTTCAACTGCGGCATATGTAACTGCATAATGGTTTATGGTATGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

173

Amino Acids

18.96

Weight (kDa)

6.54

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	59 - 140	4.1e-10	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24485 AT1G24485 AT1G24485 AT1G24485 AT3G46240 AT3G46260 AT3G46270 AT3G46270 AT3G46280
fragaria_vesca	FvH4_3g34600 FvH4_3g34600 FvH4_3g34610 FvH4_3g34610 FvH4_7g34060 FvH4_7g34060
malus_domestica	MD06G1235100.v1.1 MD11G1117200.v1.1
prunus_persica	Prupe.2G327000_v2.0.a1 Prupe.2G327000_v2.0.a1 Prupe.5G239900_v2.0.a1 Prupe.6G087500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0062321 RchiOBHm_Chr7g0177641 RchiOBHm_Chr7g0177651
rosa_laevigata	RLG00000005517 RLG00000026048 RLG00000035549
rosa_multiflora	Rmu_sc0006298.1_g000001 Rmu_ssc0000236.1_g000001 Rmu_ssc0000409.1_g000030 Rmu_ssc0000409.1_g000031
rosa_roxburghii	Rroxscaffold_1G00018380 Rroxscaffold_3G00275690 Rroxscaffold_3G00275700 Rroxscaffold_4G00276770
rosa_rugosa	Rorug01G0446900 Rorug05G0348200 Rorug05G0348300 Rorug06G0408300
rosa_samantha	Rh1CG442900 Rh5AG408300 Rh5BG422000 Rh5CG446000 Rh5DG437000 Rh7AG007700 Rh7BG007500 Rh7BG007600 Rh7CG008100 Rh7DG007800
rosa_wichuraiana	Rw0G008230 Rw5G038470 Rw7G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AccB7I	CCANNNNNTGG	1 cut(s)	296
AciI	CCGC	2 cut(s)	113, 483
AclWI	GGATC	3 cut(s)	11, 136, 234
AcsI	RAATTY	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	4 cut(s)	5, 189, 317, 460
AfiI	CCNNNNNNNGG	2 cut(s)	119, 296
AgsI	TTSAA	1 cut(s)	478
AhlI	ACTAGT	1 cut(s)	347
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
AlwI	GGATC	3 cut(s)	11, 136, 234
AlwNI	CAGNNNCTG	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	365, 368
ApoI	RAATTY	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	109
BbvI	GCAGC	2 cut(s)	355, 377
BccI	CCATC	3 cut(s)	50, 425, 449
BceAI	ACGGC	2 cut(s)	293, 348
BciVI	GTATCC	1 cut(s)	90
BcuI	ACTAGT	1 cut(s)	347
BfaI	CTAG	2 cut(s)	348, 431
BfuI	GTATCC	1 cut(s)	90
BisI	GCNGC	4 cut(s)	113, 366, 369, 484
BlsI	GCNGC	4 cut(s)	114, 367, 370, 485
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	2 cut(s)	111, 288
BmsI	GCATC	2 cut(s)	79, 344
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 296
Bse1I	ACTGG	2 cut(s)	124, 427
BseLI	CCNNNNNNNGG	2 cut(s)	119, 296
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	2 cut(s)	124, 427
BseXI	GCAGC	2 cut(s)	355, 377
BshNI	GGYRCC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	119, 296
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	6 cut(s)	16, 97, 128, 231, 239, 274
BspACI	CCGC	2 cut(s)	113, 483
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	111, 288
BspPI	GGATC	3 cut(s)	11, 136, 234
BspQI	GCTCTTC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	109
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	124, 427
BssMI	GATC	6 cut(s)	16, 97, 128, 231, 239, 274
Bst4CI	ACNGT	2 cut(s)	139, 158
Bst6I	CTCTTC	1 cut(s)	36
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	167, 266
BstDEI	CTNAG	1 cut(s)	74
BstKTI	GATC	6 cut(s)	19, 100, 131, 234, 242, 277
BstMBI	GATC	6 cut(s)	16, 97, 128, 231, 239, 274
BstV1I	GCAGC	2 cut(s)	355, 377
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	90
BtgZI	GCGATG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	2 cut(s)	167, 266
CaiI	CAGNNNCTG	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	4 cut(s)	4, 188, 316, 459
CviAII	CATG	2 cut(s)	11, 328
CviJI	RGCY	5 cut(s)	9, 169, 268, 308, 368
CviKI_1	RGCY	5 cut(s)	9, 169, 268, 308, 368
CviQI	GTAC	4 cut(s)	4, 188, 316, 459
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	6 cut(s)	18, 99, 130, 233, 241, 276
DpnII	GATC	6 cut(s)	16, 97, 128, 231, 239, 274
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	237
EcoT22I	ATGCAT	1 cut(s)	94
FaeI	CATG	2 cut(s)	14, 331
FatI	CATG	2 cut(s)	10, 327
FauNDI	CATATG	2 cut(s)	94, 488
Fnu4HI	GCNGC	4 cut(s)	113, 366, 369, 484
Fsp4HI	GCNGC	4 cut(s)	113, 366, 369, 484
FspBI	CTAG	2 cut(s)	348, 431
GluI	GCNGC	4 cut(s)	113, 366, 369, 484
Hin1II	CATG	2 cut(s)	14, 331
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	374, 382
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	2 cut(s)	83, 173
Hpy8I	GTNNAC	1 cut(s)	223
HpyCH4III	ACNGT	2 cut(s)	139, 158
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	92, 498
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	14, 331
Kzo9I	GATC	6 cut(s)	16, 97, 128, 231, 239, 274
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	8 cut(s)	61, 96, 105, 151, 186, 294, 347, 408
Lsp1109I	GCAGC	2 cut(s)	355, 377
LweI	GCATC	2 cut(s)	79, 344
MaeI	CTAG	2 cut(s)	348, 431
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	152, 491
MalI	GATC	6 cut(s)	18, 99, 130, 233, 241, 276
MboI	GATC	6 cut(s)	16, 97, 128, 231, 239, 274
MboII	GAAGA	2 cut(s)	23, 330
MflI	RGATCY	1 cut(s)	239
MluCI	AATT	5 cut(s)	102, 132, 192, 248, 468
MnlI	CCTC	4 cut(s)	388, 396, 401, 438
Mph1103I	ATGCAT	1 cut(s)	94
MspA1I	CMGCKG	1 cut(s)	368
NdeI	CATATG	2 cut(s)	94, 488
NdeII	GATC	6 cut(s)	16, 97, 128, 231, 239, 274
NlaIII	CATG	2 cut(s)	14, 331
NlaIV	GGNNCC	2 cut(s)	111, 288
NsiI	ATGCAT	1 cut(s)	94
PciSI	GCTCTTC	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	374, 382
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	4 cut(s)	114, 367, 370, 485
PspN4I	GGNNCC	2 cut(s)	111, 288
PspPI	GGNCC	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	4 cut(s)	5, 189, 317, 460
RsaNI	GTAC	4 cut(s)	4, 188, 316, 459
SapI	GCTCTTC	1 cut(s)	36
SatI	GCNGC	4 cut(s)	113, 366, 369, 484
Sau3AI	GATC	6 cut(s)	16, 97, 128, 231, 239, 274
Sau96I	GGNCC	1 cut(s)	425
SetI	ASST	8 cut(s)	50, 80, 154, 189, 283, 295, 370, 430
SfaNI	GCATC	2 cut(s)	79, 344
SinI	GGWCC	1 cut(s)	425
SpeI	ACTAGT	1 cut(s)	347
Sse9I	AATT	5 cut(s)	102, 132, 192, 248, 468
SsiI	CCGC	2 cut(s)	113, 483
SspMI	CTAG	2 cut(s)	348, 431
TaaI	ACNGT	2 cut(s)	139, 158
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	5 cut(s)	15, 100, 254, 277, 380
TasI	AATT	5 cut(s)	102, 132, 192, 248, 468
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	2 cut(s)	115, 486
TfiI	GAWTC	2 cut(s)	374, 382
TscAI	CASTG	1 cut(s)	427
TseI	GCWGC	2 cut(s)	365, 368
TspDTI	ATGAA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	427
Van91I	CCANNNNNTGG	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	1 cut(s)	102
XspI	CTAG	2 cut(s)	348, 431
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.