AT3G46270

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001437
Physical Location & Seq
Reverse (-)
17000328 .. 17004344
4017 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46270.1

Sequence Viewer

Length: 1413 bp
ATGGAGAGTCCCCATGGGGTTTTGTTACTCGCATTTATATCAACTTTGGCTATTGTTCACCTTGTTCAAGCTCAGGATCAAAAAGGTATAAGCATTGACTGTGGAACAACGGGATCCTACGTGGACTCCAACAACGTAACATGGGTCGGAGATAAGGGTTTCGTCACCACCGGCGAATCCATTAATATTACGGACGTCACCACAAAGCCGATCAATACTCTCCGGTATTTTCCAACCGGTCAAACAAACTGCTACACCAATATTCCGGTGACAAAAGGCAGGAAAACCCTCGTGAGGACGAAGTACTACTACGAGAACTACGATGACAAGTTCTCGCCGCCATCTTTCGACATAGTTTATGACGGGAAACACCGTGATTCTGTTGATATTACTGAGTCGTTACTCGACGACGAGGACACATTTTATTTCTCTGAGGTGATTTTTGCTCCGGCGAGTGAGAATATCAGCGTTTGCCTTCTCCGTACGTCTCCGTCCGATAACCCTTTTATATCTTCCATTGAAGTTTACAGCTTCGATGACGGCATGTACAAAGATCTTGGTCCTGAAGAAGGTCTCATTCTCTATCAAAGAATTACGTACGGAGCCAAAAAGCTTATAAGCTATCCGTTAGATCCTTTCGGTAGGCTATGGTCTCCGTCAGCGTCCGGAGACAACACCGCACTGACCGATCTATCGACCTCAGCCCCATCTATAGACATCACCGGGGCGTCTAACAAGCCGCCAGAGATTGTTATGTCCAAGGCATTGTCAGGAGACGGCTTAATCATCTCCGACCTGCCTCTCCCCTCAACTGCTACACTGGTATATTTGGCTCTTTACTTCTCGGAGCCTCAGAGTCTAGGTCGGACCCAGAAACGATCGTTCAACGTTTTCTTGGACGACATGCAAGTGGGTTCACATCCCATCGTACCGGTTTTTGGGAAAGCGACTCAACTCGTTTTGAGAGATGTAGAGGCCACTTCGGGGTCCCAAATAGTCTTAAAGTCTACTGATGACTCGGTATTGCCGACCATGATCAATGGTTTGGAGCTATATTCCATAAGTAACAATCAGCACGGTGGAAGCGGAGGAAAAAGCGGTGGTGGTGATAACGGTGGTGGCGGGGGGCAAAGCGGTGGTGGTAATAATGGTGGGACAAATTTAAAAGGAGGAAAGAAAAAGAACAGCTTACCACTCATTCTAGGCGTTACATTCGCCTCCGTATTCGTAATTCTCTGGTCAGCGTTTGTGGTTAATATTTTGAGAAAGCGTCAAAATGCGAAGCCAGTGTCCAACACAGCACCAACTACTTCCACAGAGCGTGGGATAGGCACAGGGACGTCACCTCTATTTGGACAAGAAATGGCCAGTGACACGAATGATTCGTACGTTGTTCAAAATGAACAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

470

Amino Acids

50.46

Weight (kDa)

4.96

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 32 - 354 3e-74 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 617
AatII GACGTC 2 cut(s) 198, 1343
Acc36I ACCTGC 1 cut(s) 804
AccI GTMKAC 1 cut(s) 1007
AccIII TCCGGA 1 cut(s) 665
AciI CCGC 7 cut(s) 338, 678, 740, 1086, 1098, 1122, 1134
AclI AACGTT 1 cut(s) 888
AclWI GGATC 4 cut(s) 84, 108, 121, 626
AcoI YGGCCR 1 cut(s) 1365
AcsI RAATTY 1 cut(s) 1159
AcuI CTGAAG 1 cut(s) 585
AcyI GRCGYC 3 cut(s) 195, 728, 1340
AfaI GTAC 6 cut(s) 305, 484, 548, 599, 930, 1388
AfiI CCNNNNNNNGG 5 cut(s) 294, 569, 938, 984, 1352
AgeI ACCGGT 2 cut(s) 236, 931
AgsI TTSAA 4 cut(s) 68, 521, 886, 1397
AluBI AGCT 6 cut(s) 71, 531, 613, 621, 1051, 1188
AluI AGCT 6 cut(s) 71, 531, 613, 621, 1051, 1188
Alw26I GTCTC 5 cut(s) 492, 578, 657, 663, 768
AlwI GGATC 4 cut(s) 84, 108, 121, 626
Aor13HI TCCGGA 1 cut(s) 665
AoxI GGCC 2 cut(s) 975, 1365
ApoI RAATTY 1 cut(s) 1159
ArsI GACNNNNNNTTYG 2 cut(s) 1274, 1306
AseI ATTAAT 1 cut(s) 183
AsiGI ACCGGT 2 cut(s) 236, 931
AspS9I GGNCC 3 cut(s) 560, 867, 987
AsuC2I CCSGG 1 cut(s) 724
AsuHPI GGTGA 8 cut(s) 50, 157, 190, 280, 448, 712, 1118, 1335
AvaII GGWCC 3 cut(s) 560, 867, 987
BalI TGGCCA 1 cut(s) 1367
BamHI GGATCC 1 cut(s) 113
BarI GAAGNNNNNNTAC 2 cut(s) 293, 325
BauI CACGAG 1 cut(s) 290
BbvCI CCTCAGC 1 cut(s) 700
BccI CCATC 3 cut(s) 349, 715, 932
BceAI ACGGC 2 cut(s) 556, 793
BclI TGATCA 1 cut(s) 1035
BcnI CCSGG 1 cut(s) 724
BcoDI GTCTC 5 cut(s) 492, 578, 657, 663, 768
BfaI CTAG 2 cut(s) 860, 1202
BfmI CTRYAG 1 cut(s) 711
BfuAI ACCTGC 1 cut(s) 804
BglII AGATCT 1 cut(s) 553
BisI GCNGC 2 cut(s) 338, 740
BlsI GCNGC 2 cut(s) 339, 741
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 724
Bme18I GGWCC 3 cut(s) 560, 867, 987
BmgT120I GGNCC 3 cut(s) 560, 867, 987
BmiI GGNNCC 6 cut(s) 115, 604, 849, 869, 988, 989
BmrFI CCNGG 1 cut(s) 724
Bpu10I CCTNAGC 2 cut(s) 72, 700
BpuMI CCSGG 1 cut(s) 724
BsaAI YACGTR 2 cut(s) 121, 597
BsaHI GRCGYC 3 cut(s) 195, 728, 1340
BsaI GGTCTC 2 cut(s) 578, 657
BsaJI CCNNGG 3 cut(s) 13, 723, 759
BsaWI WCCGGW 5 cut(s) 222, 236, 265, 665, 931
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 5 cut(s) 294, 569, 938, 984, 1352
Bse118I RCCGGY 3 cut(s) 170, 236, 931
Bse1I ACTGG 3 cut(s) 825, 1286, 1368
BseAI TCCGGA 1 cut(s) 665
BseDI CCNNGG 3 cut(s) 13, 723, 759
BseGI GGATG 1 cut(s) 919
BseLI CCNNNNNNNGG 5 cut(s) 294, 569, 938, 984, 1352
BseMII CTCAG 5 cut(s) 86, 384, 423, 714, 866
BseNI ACTGG 3 cut(s) 825, 1286, 1368
Bsh1285I CGRYCG 1 cut(s) 881
BshFI GGCC 2 cut(s) 977, 1367
BshTI ACCGGT 2 cut(s) 236, 931
BsiEI CGRYCG 1 cut(s) 881
BsiSI CCGG 8 cut(s) 171, 223, 237, 266, 449, 666, 723, 932
BsiWI CGTACG 3 cut(s) 482, 597, 1386
BslFI GGGAC 3 cut(s) 973, 1168, 1351
BslI CCNNNNNNNGG 5 cut(s) 294, 569, 938, 984, 1352
BsmAI GTCTC 5 cut(s) 492, 578, 657, 663, 768
BsmBI CGTCTC 2 cut(s) 492, 768
BsmFI GGGAC 3 cut(s) 973, 1168, 1351
BsnI GGCC 2 cut(s) 977, 1367
Bso31I GGTCTC 2 cut(s) 578, 657
Bsp13I TCCGGA 1 cut(s) 665
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 8 cut(s) 76, 113, 210, 553, 631, 688, 878, 1035
Bsp19I CCATGG 1 cut(s) 13
BspACI CCGC 7 cut(s) 338, 678, 740, 1086, 1098, 1122, 1134
BspANI GGCC 2 cut(s) 977, 1367
BspCNI CTCAG 5 cut(s) 85, 385, 424, 713, 865
BspEI TCCGGA 1 cut(s) 665
BspLI GGNNCC 6 cut(s) 115, 604, 849, 869, 988, 989
BspMI ACCTGC 1 cut(s) 804
BspPI GGATC 4 cut(s) 84, 108, 121, 626
BspTNI GGTCTC 2 cut(s) 578, 657
BsrFI RCCGGY 3 cut(s) 170, 236, 931
BsrGI TGTACA 1 cut(s) 546
BsrI ACTGG 3 cut(s) 825, 1286, 1368
BssAI RCCGGY 3 cut(s) 170, 236, 931
BssECI CCNNGG 3 cut(s) 13, 723, 759
BssMI GATC 8 cut(s) 76, 113, 210, 553, 631, 688, 878, 1035
BssNI GRCGYC 3 cut(s) 195, 728, 1340
BssSI CACGAG 1 cut(s) 290
BssT1I CCWWGG 2 cut(s) 13, 759
Bst2BI CACGAG 1 cut(s) 290
Bst4CI ACNGT 4 cut(s) 101, 374, 1079, 1115
BstACI GRCGYC 3 cut(s) 195, 728, 1340
BstAUI TGTACA 1 cut(s) 546
BstBAI YACGTR 2 cut(s) 121, 597
BstDEI CTNAG 5 cut(s) 72, 393, 432, 700, 852
BstDSI CCRYGG 1 cut(s) 13
BstENI CCTNNNNNAGG 1 cut(s) 567
BstF5I GGATG 1 cut(s) 919
BstKTI GATC 8 cut(s) 79, 116, 213, 556, 634, 691, 881, 1038
BstMAI GTCTC 5 cut(s) 492, 578, 657, 663, 768
BstMBI GATC 8 cut(s) 76, 113, 210, 553, 631, 688, 878, 1035
BstMCI CGRYCG 1 cut(s) 881
BstNSI RCATGY 2 cut(s) 547, 907
BstSCI CCNGG 1 cut(s) 722
BstSFI CTRYAG 1 cut(s) 711
BstSNI TACGTA 1 cut(s) 597
BstX2I RGATCY 3 cut(s) 113, 553, 631
BstYI RGATCY 3 cut(s) 113, 553, 631
BsuRI GGCC 2 cut(s) 977, 1367
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 1 cut(s) 919
BtsIMutI CAGTG 4 cut(s) 680, 818, 1293, 1375
BveI ACCTGC 1 cut(s) 804
Cfr10I RCCGGY 3 cut(s) 170, 236, 931
Cfr13I GGNCC 3 cut(s) 560, 867, 987
CseI GACGC 3 cut(s) 651, 717, 1259
Csp6I GTAC 6 cut(s) 304, 483, 547, 598, 929, 1387
CspAI ACCGGT 2 cut(s) 236, 931
CviAII CATG 5 cut(s) 14, 141, 544, 904, 1033
CviQI GTAC 6 cut(s) 304, 483, 547, 598, 929, 1387
DdeI CTNAG 5 cut(s) 72, 393, 432, 700, 852
DpnI GATC 8 cut(s) 78, 115, 212, 555, 633, 690, 880, 1037
DpnII GATC 8 cut(s) 76, 113, 210, 553, 631, 688, 878, 1035
DraI TTTAAA 1 cut(s) 1164
EaeI YGGCCR 1 cut(s) 1365
Eco105I TACGTA 1 cut(s) 597
Eco130I CCWWGG 2 cut(s) 13, 759
Eco31I GGTCTC 2 cut(s) 578, 657
Eco47I GGWCC 3 cut(s) 560, 867, 987
Eco57I CTGAAG 1 cut(s) 585
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoO109I RGGNCCY 1 cut(s) 987
EcoT14I CCWWGG 2 cut(s) 13, 759
ErhI CCWWGG 2 cut(s) 13, 759
Esp3I CGTCTC 2 cut(s) 492, 768
FaeI CATG 5 cut(s) 17, 144, 547, 907, 1036
FalI AAGNNNNNCTT 2 cut(s) 1172, 1204
FaqI GGGAC 3 cut(s) 973, 1168, 1351
FatI CATG 5 cut(s) 13, 140, 543, 903, 1032
FauI CCCGC 1 cut(s) 1115
FbaI TGATCA 1 cut(s) 1035
FblI GTMKAC 1 cut(s) 1007
Fnu4HI GCNGC 2 cut(s) 338, 740
FokI GGATG 1 cut(s) 906
Fsp4HI GCNGC 2 cut(s) 338, 740
FspBI CTAG 2 cut(s) 860, 1202
GluI GCNGC 2 cut(s) 338, 740
HaeIII GGCC 2 cut(s) 977, 1367
HapII CCGG 8 cut(s) 171, 223, 237, 266, 449, 666, 723, 932
HgaI GACGC 3 cut(s) 651, 717, 1259
Hin1I GRCGYC 3 cut(s) 195, 728, 1340
Hin1II CATG 5 cut(s) 17, 144, 547, 907, 1036
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 9 cut(s) 7, 125, 176, 377, 395, 856, 949, 1016, 1382
HpaII CCGG 8 cut(s) 171, 223, 237, 266, 449, 666, 723, 932
HphI GGTGA 8 cut(s) 50, 157, 190, 280, 448, 712, 1118, 1335
Hpy166II GTNNAC 5 cut(s) 58, 124, 526, 917, 1008
Hpy188I TCNGA 7 cut(s) 149, 433, 496, 793, 847, 855, 867
Hpy188III TCNNGA 5 cut(s) 74, 292, 563, 666, 771
Hpy8I GTNNAC 5 cut(s) 58, 124, 526, 917, 1008
Hpy99I CGWCG 2 cut(s) 410, 413
HpyAV CCTTC 2 cut(s) 485, 563
HpyCH4III ACNGT 4 cut(s) 101, 374, 1079, 1115
HpyCH4IV ACGT 8 cut(s) 120, 135, 195, 485, 596, 888, 1340, 1389
HpyCH4V TGCA 1 cut(s) 907
HpyF3I CTNAG 5 cut(s) 72, 393, 432, 700, 852
HpySE526I ACGT 8 cut(s) 120, 135, 195, 485, 596, 888, 1340, 1389
Hsp92I GRCGYC 3 cut(s) 195, 728, 1340
Hsp92II CATG 5 cut(s) 17, 144, 547, 907, 1036
KflI GGGWCCC 1 cut(s) 987
Kpn2I TCCGGA 1 cut(s) 665
Ksp22I TGATCA 1 cut(s) 1035
Kzo9I GATC 8 cut(s) 76, 113, 210, 553, 631, 688, 878, 1035
LmnI GCTCC 4 cut(s) 451, 602, 847, 1048
MaeI CTAG 2 cut(s) 860, 1202
MaeII ACGT 8 cut(s) 120, 135, 195, 485, 596, 888, 1340, 1389
MalI GATC 8 cut(s) 78, 115, 212, 555, 633, 690, 880, 1037
MboI GATC 8 cut(s) 76, 113, 210, 553, 631, 688, 878, 1035
MboII GAAGA 2 cut(s) 504, 578
MflI RGATCY 3 cut(s) 113, 553, 631
MlsI TGGCCA 1 cut(s) 1367
MluCI AATT 3 cut(s) 591, 1159, 1230
MluNI TGGCCA 1 cut(s) 1367
MlyI GAGTC 6 cut(s) 16, 119, 404, 865, 943, 1010
MmeI TCCRAC 6 cut(s) 127, 153, 257, 816, 845, 1317
Mox20I TGGCCA 1 cut(s) 1367
MroI TCCGGA 1 cut(s) 665
MscI TGGCCA 1 cut(s) 1367
MseI TTAA 6 cut(s) 183, 782, 1001, 1163, 1254, 1411
MslI CAYNNNNRTG 1 cut(s) 908
Msp20I TGGCCA 1 cut(s) 1367
MspI CCGG 8 cut(s) 171, 223, 237, 266, 449, 666, 723, 932
MspR9I CCNGG 1 cut(s) 724
NciI CCSGG 1 cut(s) 724
NcoI CCATGG 1 cut(s) 13
NdeII GATC 8 cut(s) 76, 113, 210, 553, 631, 688, 878, 1035
NlaIII CATG 5 cut(s) 17, 144, 547, 907, 1036
NlaIV GGNNCC 6 cut(s) 115, 604, 849, 869, 988, 989
NmuCI GTSAC 5 cut(s) 163, 196, 268, 1341, 1370
NspI RCATGY 2 cut(s) 547, 907
PcsI WCGNNNNNNNCGW 3 cut(s) 318, 1025, 1382
PfeI GAWTC 3 cut(s) 176, 377, 1382
Pfl23II CGTACG 3 cut(s) 482, 597, 1386
PinAI ACCGGT 2 cut(s) 236, 931
PkrI GCNGC 2 cut(s) 339, 741
Ple19I CGATCG 1 cut(s) 881
PleI GAGTC 6 cut(s) 15, 119, 403, 864, 943, 1010
PpsI GAGTC 6 cut(s) 15, 119, 403, 864, 943, 1010
Ppu21I YACGTR 2 cut(s) 121, 597
PpuMI RGGWCCY 1 cut(s) 987
PshBI ATTAAT 1 cut(s) 183
PsiI TTATAA 1 cut(s) 617
Psp1406I AACGTT 1 cut(s) 888
Psp5II RGGWCCY 1 cut(s) 987
PspLI CGTACG 3 cut(s) 482, 597, 1386
PspN4I GGNNCC 6 cut(s) 115, 604, 849, 869, 988, 989
PspPI GGNCC 3 cut(s) 560, 867, 987
PspPPI RGGWCCY 1 cut(s) 987
PsuI RGATCY 3 cut(s) 113, 553, 631
PvuI CGATCG 1 cut(s) 881
RsaI GTAC 6 cut(s) 305, 484, 548, 599, 930, 1388
RsaNI GTAC 6 cut(s) 304, 483, 547, 598, 929, 1387
RseI CAYNNNNRTG 1 cut(s) 908
SaqAI TTAA 6 cut(s) 183, 782, 1001, 1163, 1254, 1411
SatI GCNGC 2 cut(s) 338, 740
Sau3AI GATC 8 cut(s) 76, 113, 210, 553, 631, 688, 878, 1035
Sau96I GGNCC 3 cut(s) 560, 867, 987
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 6 cut(s) 16, 119, 404, 865, 943, 1010
ScrFI CCNGG 1 cut(s) 724
SfcI CTRYAG 1 cut(s) 711
SgrAI CRCCGGYG 1 cut(s) 170
SinI GGWCC 3 cut(s) 560, 867, 987
SmiMI CAYNNNNRTG 1 cut(s) 908
SnaBI TACGTA 1 cut(s) 597
Sse9I AATT 3 cut(s) 591, 1159, 1230
SsiI CCGC 7 cut(s) 338, 678, 740, 1086, 1098, 1122, 1134
SspI AATATT 3 cut(s) 187, 262, 1258
SspMI CTAG 2 cut(s) 860, 1202
StyD4I CCNGG 1 cut(s) 722
StyI CCWWGG 2 cut(s) 13, 759
TaaI ACNGT 4 cut(s) 101, 374, 1079, 1115
TaiI ACGT 8 cut(s) 123, 138, 198, 488, 599, 891, 1343, 1392
TaqI TCGA 4 cut(s) 348, 405, 534, 695
TaqII GACCGA 1 cut(s) 701
TasI AATT 3 cut(s) 591, 1159, 1230
TatI WGTACW 2 cut(s) 303, 546
TauI GCSGC 2 cut(s) 340, 742
TfiI GAWTC 3 cut(s) 176, 377, 1382
Tru1I TTAA 6 cut(s) 183, 782, 1001, 1163, 1254, 1411
Tru9I TTAA 6 cut(s) 183, 782, 1001, 1163, 1254, 1411
TscAI CASTG 4 cut(s) 687, 825, 1293, 1375
TseFI GTSAC 5 cut(s) 163, 196, 268, 1341, 1370
Tsp45I GTSAC 5 cut(s) 163, 196, 268, 1341, 1370
TspGWI ACGGA 7 cut(s) 206, 470, 480, 615, 615, 645, 1210
TspRI CASTG 4 cut(s) 687, 825, 1293, 1375
VpaK11BI GGWCC 3 cut(s) 560, 867, 987
VspI ATTAAT 1 cut(s) 183
XagI CCTNNNNNAGG 1 cut(s) 567
XapI RAATTY 1 cut(s) 1159
XceI RCATGY 2 cut(s) 547, 907
XmiI GTMKAC 1 cut(s) 1007
XspI CTAG 2 cut(s) 860, 1202
ZraI GACGTC 2 cut(s) 196, 1341
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.