Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000409.1

Orthogroup ID

OG0001437

Physical Location & Seq

Genomic Coordinates Forward (+)

112699 .. 115989

Gene Structure 3291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000409.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgtttaatgaagtcctattatatggtaataaattttcagttgaagggttggctgcattgcaaggaaagttcagtattctacaggaatggactggagacccttgcctcccatctccatatacatgggactgggtcaattgtactactgatgacacaccgcgagtaacagcactgtatttgaatggctatggtctatctgggcaacttccagacttcagttccatggatgctcttgtcacaatagacatgcacaacaacagcctcagtggagcaattcctagttttcttggcaccttgcccaatctaaaagaactgaacttaggagacaataaactgagtggaccagtaccctccacaatttcaaagaataccaagctgaagttcgacaatgatagcccctcttcatcagacagcagtggcactaagaagaaaagcagcaaactaccattaattcttggaatagcaattccagcttttgcggcgttctgggttattgtggtagtgtgtgtttgtgtagtaacttcaaataagagaagaaaagcagccgtcggagcaatcggcacaggacaaattggtgtggccaacgtgcctaatggcgctcaacaaggggtgcaaatggcgggtaaattcggagaagctgtgatgaaccagtacgagatcaacgttgaggagcaggcaaccccagattatcagcaacaagtaaccccagaacatgcgtgccagcaccgtggggtgcagtcgtcgggggagtcccttgacctgacttcttcttcaagcgttgtggacgaggagagccccaacctccccacaaagggcgttacccttgcttctttggtagtatcggtggcagtagcactggcagtcggctcggagagactaggattggaagtacggtcgccgggtctcaacaaggttgaaggtttgctccgggcaggctttgtaatcgctgggattgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

319

Amino Acids

33.69

Weight (kDa)

5.08

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24485 AT1G24485 AT1G24485 AT1G24485 AT3G46240 AT3G46260 AT3G46270 AT3G46270 AT3G46280
fragaria_vesca	FvH4_3g34600 FvH4_3g34600 FvH4_3g34610 FvH4_3g34610 FvH4_7g34060 FvH4_7g34060
malus_domestica	MD06G1235100.v1.1 MD11G1117200.v1.1
prunus_persica	Prupe.2G327000_v2.0.a1 Prupe.2G327000_v2.0.a1 Prupe.5G239900_v2.0.a1 Prupe.6G087500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0062321 RchiOBHm_Chr7g0177641 RchiOBHm_Chr7g0177651
rosa_laevigata	RLG00000005517 RLG00000026048 RLG00000035549
rosa_multiflora	Rmu_sc0006298.1_g000001 Rmu_ssc0000236.1_g000001 Rmu_ssc0000409.1_g000030 Rmu_ssc0000409.1_g000031
rosa_roxburghii	Rroxscaffold_1G00018380 Rroxscaffold_3G00275690 Rroxscaffold_3G00275700 Rroxscaffold_4G00276770
rosa_rugosa	Rorug01G0446900 Rorug05G0348200 Rorug05G0348300 Rorug06G0408300
rosa_samantha	Rh1CG442900 Rh5AG408300 Rh5BG422000 Rh5CG446000 Rh5DG437000 Rh7AG007700 Rh7BG007500 Rh7BG007600 Rh7CG008100 Rh7DG007800
rosa_wichuraiana	Rw0G008230 Rw5G038470 Rw7G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccII	CGCG	1 cut(s)	160
AciI	CCGC	3 cut(s)	158, 479, 620
AclI	AACGTT	1 cut(s)	663
AcoI	YGGCCR	1 cut(s)	579
AcsI	RAATTY	2 cut(s)	32, 626
AcuI	CTGAAG	2 cut(s)	199, 398
AfaI	GTAC	4 cut(s)	142, 348, 653, 891
AfiI	CCNNNNNNNGG	2 cut(s)	811, 812
AgsI	TTSAA	6 cut(s)	44, 181, 363, 525, 774, 917
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	3 cut(s)	376, 473, 638
AluI	AGCT	3 cut(s)	376, 473, 638
Alw26I	GTCTC	4 cut(s)	90, 318, 868, 908
AoxI	GGCC	1 cut(s)	579
ApeKI	GCWGC	3 cut(s)	53, 435, 542
ApoI	RAATTY	2 cut(s)	32, 626
AseI	ATTAAT	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	341
AsuC2I	CCSGG	2 cut(s)	900, 929
AvaII	GGWCC	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	797
BbvI	GCAGC	3 cut(s)	40, 447, 554
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	530
BcgI	CGANNNNNNTGC	2 cut(s)	849, 883
BcnI	CCSGG	2 cut(s)	900, 929
BcoDI	GTCTC	4 cut(s)	90, 318, 868, 908
BfaI	CTAG	2 cut(s)	279, 878
BfmI	CTRYAG	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	600
BisI	GCNGC	4 cut(s)	54, 436, 480, 543
BlsI	GCNGC	4 cut(s)	55, 437, 481, 544
Bme1390I	CCNGG	2 cut(s)	900, 929
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	2 cut(s)	900, 929
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	217
BmuI	ACTGGG	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	114
BpuMI	CCSGG	2 cut(s)	900, 929
BsaI	GGTCTC	2 cut(s)	90, 908
BsaJI	CCNNGG	2 cut(s)	222, 727
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	2 cut(s)	811, 812
Bse1I	ACTGG	5 cut(s)	97, 134, 344, 649, 861
Bse3DI	GCAATG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	222, 727
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	811, 812
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	277, 326
BseNI	ACTGG	5 cut(s)	97, 134, 344, 649, 861
BseRI	GAGGAG	2 cut(s)	683, 803
BseXI	GCAGC	3 cut(s)	40, 447, 554
BseYI	CCCAGC	1 cut(s)	947
BsgI	GTGCAG	1 cut(s)	755
Bsh1236I	CGCG	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	896
BshFI	GGCC	1 cut(s)	581
BshNI	GGYRCC	1 cut(s)	290
BsiEI	CGRYCG	1 cut(s)	896
BsiSI	CCGG	2 cut(s)	899, 928
BslFI	GGGAC	2 cut(s)	140, 736
BslI	CCNNNNNNNGG	2 cut(s)	811, 812
BsmAI	GTCTC	4 cut(s)	90, 318, 868, 908
BsmFI	GGGAC	2 cut(s)	140, 736
BsnI	GGCC	1 cut(s)	581
Bso31I	GGTCTC	2 cut(s)	90, 908
Bsp1286I	GDGCHC	1 cut(s)	797
Bsp143I	GATC	1 cut(s)	657
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	3 cut(s)	158, 479, 620
BspANI	GGCC	1 cut(s)	581
BspCNI	CTCAG	2 cut(s)	276, 327
BspFNI	CGCG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	290
BspTNI	GGTCTC	2 cut(s)	90, 908
BsrDI	GCAATG	1 cut(s)	56
BsrI	ACTGG	5 cut(s)	97, 134, 344, 649, 861
BssECI	CCNNGG	2 cut(s)	222, 727
BssMI	GATC	1 cut(s)	657
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	3 cut(s)	174, 728, 894
Bst6I	CTCTTC	1 cut(s)	406
BstC8I	GCNNGC	4 cut(s)	675, 718, 722, 934
BstDEI	CTNAG	4 cut(s)	263, 319, 335, 423
BstDSI	CCRYGG	2 cut(s)	222, 727
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	160
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	1 cut(s)	660
BstMAI	GTCTC	4 cut(s)	90, 318, 868, 908
BstMBI	GATC	1 cut(s)	657
BstMCI	CGRYCG	1 cut(s)	896
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 479, 551
BstNSI	RCATGY	2 cut(s)	250, 716
BstSCI	CCNGG	2 cut(s)	898, 927
BstSFI	CTRYAG	1 cut(s)	80
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	40, 447, 554
BstXI	CCANNNNNNTGG	2 cut(s)	123, 728
BsuRI	GGCC	1 cut(s)	581
BtgI	CCRYGG	2 cut(s)	222, 727
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	4 cut(s)	170, 271, 421, 854
Cac8I	GCNNGC	4 cut(s)	675, 718, 722, 934
CfoI	GCGC	1 cut(s)	599
Cfr13I	GGNCC	1 cut(s)	341
Csp6I	GTAC	4 cut(s)	141, 347, 652, 890
CspCI	CAANNNNNGTGG	2 cut(s)	762, 797
CviAII	CATG	4 cut(s)	123, 223, 247, 713
CviQI	GTAC	4 cut(s)	141, 347, 652, 890
DdeI	CTNAG	4 cut(s)	263, 319, 335, 423
DpnI	GATC	1 cut(s)	659
DpnII	GATC	1 cut(s)	657
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	797
Eco31I	GGTCTC	2 cut(s)	90, 908
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	2 cut(s)	199, 398
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	797
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	4 cut(s)	126, 226, 250, 716
FaiI	YATR	9 cut(s)	22, 24, 118, 120, 124, 189, 224, 248, 714
FaqI	GGGAC	2 cut(s)	140, 736
FatI	CATG	4 cut(s)	122, 222, 246, 712
FauI	CCCGC	1 cut(s)	613
Fnu4HI	GCNGC	4 cut(s)	54, 436, 480, 543
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	797
Fsp4HI	GCNGC	4 cut(s)	54, 436, 480, 543
FspBI	CTAG	2 cut(s)	279, 878
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	4 cut(s)	54, 436, 480, 543
GsaI	CCCAGC	1 cut(s)	951
GsuI	CTGGAG	1 cut(s)	114
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	1 cut(s)	581
HapII	CCGG	2 cut(s)	899, 928
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	4 cut(s)	126, 226, 250, 716
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HinfI	GANTC	1 cut(s)	749
HpaII	CCGG	2 cut(s)	899, 928
Hpy166II	GTNNAC	2 cut(s)	341, 784
Hpy188I	TCNGA	4 cut(s)	409, 551, 632, 871
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	2 cut(s)	341, 784
Hpy99I	CGWCG	2 cut(s)	551, 745
HpyAV	CCTTC	2 cut(s)	38, 911
HpyCH4III	ACNGT	3 cut(s)	174, 728, 894
HpyCH4IV	ACGT	2 cut(s)	585, 663
HpyCH4V	TGCA	5 cut(s)	56, 61, 250, 613, 736
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 479, 551
HpyF3I	CTNAG	4 cut(s)	263, 319, 335, 423
HpySE526I	ACGT	2 cut(s)	585, 663
Hsp92II	CATG	4 cut(s)	126, 226, 250, 716
HspAI	GCGC	1 cut(s)	597
Kzo9I	GATC	1 cut(s)	657
LmnI	GCTCC	4 cut(s)	269, 551, 670, 930
Lsp1109I	GCAGC	3 cut(s)	40, 447, 554
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	279, 878
MaeII	ACGT	2 cut(s)	585, 663
MaeIII	GTNAC	5 cut(s)	163, 235, 517, 700, 817
MalI	GATC	1 cut(s)	659
MboI	GATC	1 cut(s)	657
MboII	GAAGA	5 cut(s)	393, 439, 546, 759, 762
MfeI	CAATTG	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	797
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	8 cut(s)	32, 136, 273, 357, 450, 465, 570, 626
MluNI	TGGCCA	1 cut(s)	581
MlyI	GAGTC	1 cut(s)	758
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	7 cut(s)	116, 272, 361, 409, 661, 781, 812
Mox20I	TGGCCA	1 cut(s)	581
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	2 cut(s)	6, 449
MslI	CAYNNNNRTG	1 cut(s)	121
Msp20I	TGGCCA	1 cut(s)	581
MspI	CCGG	2 cut(s)	899, 928
MspR9I	CCNGG	2 cut(s)	900, 929
MunI	CAATTG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	3 cut(s)	470, 479, 551
NciI	CCSGG	2 cut(s)	900, 929
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	657
NlaIII	CATG	4 cut(s)	126, 226, 250, 716
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	2 cut(s)	250, 716
PcsI	WCGNNNNNNNCGW	1 cut(s)	660
PflFI	GACNNNGTC	1 cut(s)	131
PkrI	GCNGC	4 cut(s)	55, 437, 481, 544
PleI	GAGTC	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	757
PshBI	ATTAAT	1 cut(s)	449
Psp1406I	AACGTT	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	947
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	341
PsyI	GACNNNGTC	1 cut(s)	131
RsaI	GTAC	4 cut(s)	142, 348, 653, 891
RsaNI	GTAC	4 cut(s)	141, 347, 652, 890
RseI	CAYNNNNRTG	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	6, 449
SatI	GCNGC	4 cut(s)	54, 436, 480, 543
Sau3AI	GATC	1 cut(s)	657
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	1 cut(s)	758
ScrFI	CCNGG	2 cut(s)	900, 929
SduI	GDGCHC	1 cut(s)	797
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	121
Sse9I	AATT	8 cut(s)	32, 136, 273, 357, 450, 465, 570, 626
SsiI	CCGC	3 cut(s)	158, 479, 620
SspMI	CTAG	2 cut(s)	279, 878
StyD4I	CCNGG	2 cut(s)	898, 927
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	3 cut(s)	174, 728, 894
TaiI	ACGT	2 cut(s)	588, 666
TaqI	TCGA	1 cut(s)	384
TasI	AATT	8 cut(s)	32, 136, 273, 357, 450, 465, 570, 626
TatI	WGTACW	1 cut(s)	140
TauI	GCSGC	1 cut(s)	482
Tru1I	TTAA	2 cut(s)	6, 449
Tru9I	TTAA	2 cut(s)	6, 449
TscAI	CASTG	4 cut(s)	177, 271, 421, 861
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	3 cut(s)	53, 435, 542
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	24, 393, 659
TspRI	CASTG	4 cut(s)	177, 271, 421, 861
Tth111I	GACNNNGTC	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	341
VspI	ATTAAT	1 cut(s)	449
XapI	RAATTY	2 cut(s)	32, 626
XceI	RCATGY	2 cut(s)	250, 716
XspI	CTAG	2 cut(s)	279, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.