Rh7AG007700

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001437
Physical Location & Seq
Forward (+)
519181 .. 520299
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG007700.1

Sequence Viewer

Length: 477 bp
ATGTTAGTAAGACTTCTCCCACCTTTGAGCTCCAGTTTGACGGCAACTACTGGACCACCGTTAACAAACCCAATATTGTTTCTTATGAGGCAATCCAAGCAGAATACGACTAGCATATGTCTTGCTCGAATTGAAGATGATCAGATCCCATTCATTTCTGCACTCGAAATTCGAAGCTTGGATTTCAAAATGTACAGCCATGTCGATCCCAAGTATGCTCTTCTGTTGGCAAATAGGTTTTATGATGGTGGAAATCAAACTCTCAGTGTAACTGTCTCTCGGGAATTGTCATGTTCACCGGCTTCTGCATCAGCACCACCCTCACCAGGACTACAAACACCTGCTCCCGGTGGCCCTAACCCGAACCCAATTCATACACCCTCTTCAGTAGACAAGGAGTTTAGTGGCAAGCTACAGATAATACTACTCCTAGGAGCCATTATTCACTTCTCTCTTCCTTCCATGTTCAGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

158

Amino Acids

17.05

Weight (kDa)

7.82

Isoelectric Point (pI)

59.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 31 - 88 7.5e-09 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 349
Acc36I ACCTGC 1 cut(s) 349
AccI GTMKAC 1 cut(s) 390
AclWI GGATC 2 cut(s) 139, 200
AcsI RAATTY 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 326, 347
AgsI TTSAA 2 cut(s) 134, 187
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 4 cut(s) 30, 177, 412, 471
AluI AGCT 4 cut(s) 30, 177, 412, 471
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 2 cut(s) 139, 200
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 1 cut(s) 352
ApoI RAATTY 1 cut(s) 168
AspA2I CCTAGG 1 cut(s) 430
AspS9I GGNCC 2 cut(s) 53, 353
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 2 cut(s) 288, 315
AsuII TTCGAA 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 279
AvaII GGWCC 1 cut(s) 53
AvrII CCTAGG 1 cut(s) 430
BanII GRGCYC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 32
BccI CCATC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 1 cut(s) 327
BclI TGATCA 1 cut(s) 139
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 111, 431
BfmI CTRYAG 1 cut(s) 413
BfuAI ACCTGC 1 cut(s) 349
BlnI CCTAGG 1 cut(s) 430
Bme1390I CCNGG 2 cut(s) 327, 348
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 2 cut(s) 53, 353
BmiI GGNNCC 1 cut(s) 436
BmrFI CCNGG 2 cut(s) 327, 348
BmsI GCATC 1 cut(s) 317
BpmI CTGGAG 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 172
BpuMI CCSGG 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 347
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 33, 55
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 430
BseLI CCNNNNNNNGG 2 cut(s) 326, 347
BseMII CTCAG 1 cut(s) 277
BseNI ACTGG 2 cut(s) 33, 55
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 2 cut(s) 299, 348
BslI CCNNNNNNNGG 2 cut(s) 326, 347
BsmAI GTCTC 1 cut(s) 280
BsnI GGCC 1 cut(s) 354
BsoBI CYCGRG 1 cut(s) 279
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 32
Bsp1407I TGTACA 1 cut(s) 192
Bsp143I GATC 3 cut(s) 139, 144, 205
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 2 cut(s) 139, 200
BspQI GCTCTTC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 298
BsrGI TGTACA 1 cut(s) 192
BsrI ACTGG 2 cut(s) 33, 55
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 3 cut(s) 139, 144, 205
BssT1I CCWWGG 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 60, 274
Bst6I CTCTTC 3 cut(s) 225, 388, 459
BstAUI TGTACA 1 cut(s) 192
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 410
BstDEI CTNAG 1 cut(s) 263
BstKTI GATC 3 cut(s) 142, 147, 208
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 3 cut(s) 139, 144, 205
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 325, 346
BstSFI CTRYAG 1 cut(s) 413
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 271
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 410
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 53, 353
Csp6I GTAC 1 cut(s) 193
CviAII CATG 3 cut(s) 200, 291, 463
CviJI RGCY 8 cut(s) 30, 177, 198, 302, 354, 412, 437, 471
CviKI_1 RGCY 8 cut(s) 30, 177, 198, 302, 354, 412, 437, 471
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 263
DpnI GATC 3 cut(s) 141, 146, 207
DpnII GATC 3 cut(s) 139, 144, 205
Eam1104I CTCTTC 3 cut(s) 225, 388, 459
EarI CTCTTC 3 cut(s) 225, 388, 459
Ecl136II GAGCTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 430
FaeI CATG 3 cut(s) 203, 294, 466
FaiI YATR 9 cut(s) 86, 116, 118, 201, 216, 243, 292, 375, 464
FatI CATG 3 cut(s) 199, 290, 462
FauNDI CATATG 1 cut(s) 116
FbaI TGATCA 1 cut(s) 139
FblI GTMKAC 1 cut(s) 390
FriOI GRGCYC 1 cut(s) 32
FspBI CTAG 2 cut(s) 111, 431
GsuI CTGGAG 1 cut(s) 16
HaeIII GGCC 1 cut(s) 354
HapII CCGG 2 cut(s) 299, 348
Hin1II CATG 3 cut(s) 203, 294, 466
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 175
HpaI GTTAAC 1 cut(s) 63
HpaII CCGG 2 cut(s) 299, 348
HphI GGTGA 2 cut(s) 288, 315
Hpy166II GTNNAC 3 cut(s) 63, 296, 391
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 3 cut(s) 63, 296, 391
HpyAV CCTTC 1 cut(s) 468
HpyCH4III ACNGT 2 cut(s) 60, 274
HpyCH4V TGCA 2 cut(s) 161, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 3 cut(s) 203, 294, 466
Ksp22I TGATCA 1 cut(s) 139
KspAI GTTAAC 1 cut(s) 63
Kzo9I GATC 3 cut(s) 139, 144, 205
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 3 cut(s) 35, 349, 434
LpnPI CCDG 7 cut(s) 36, 46, 312, 312, 339, 354, 361
LweI GCATC 1 cut(s) 317
MaeI CTAG 2 cut(s) 111, 431
MaeIII GTNAC 1 cut(s) 268
MalI GATC 3 cut(s) 141, 146, 207
MboI GATC 3 cut(s) 139, 144, 205
MboII GAAGA 4 cut(s) 146, 212, 375, 446
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 4 cut(s) 129, 168, 284, 369
MnlI CCTC 3 cut(s) 81, 331, 391
MseI TTAA 2 cut(s) 62, 475
MspI CCGG 2 cut(s) 299, 348
MspR9I CCNGG 2 cut(s) 327, 348
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 348
NdeI CATATG 1 cut(s) 116
NdeII GATC 3 cut(s) 139, 144, 205
NlaIII CATG 3 cut(s) 203, 294, 466
NlaIV GGNNCC 1 cut(s) 436
NspV TTCGAA 1 cut(s) 172
PaqCI CACCTGC 1 cut(s) 349
PciSI GCTCTTC 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 436
PspPI GGNCC 2 cut(s) 53, 353
PsuI RGATCY 1 cut(s) 144
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SacI GAGCTC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 62, 475
Sau3AI GATC 3 cut(s) 139, 144, 205
Sau96I GGNCC 2 cut(s) 53, 353
ScrFI CCNGG 2 cut(s) 327, 348
SduI GDGCHC 1 cut(s) 32
SetI ASST 7 cut(s) 25, 32, 179, 239, 343, 414, 473
SfaNI GCATC 1 cut(s) 317
SfcI CTRYAG 1 cut(s) 413
SfuI TTCGAA 1 cut(s) 172
SinI GGWCC 1 cut(s) 53
Sse9I AATT 4 cut(s) 129, 168, 284, 369
SspI AATATT 1 cut(s) 75
SspMI CTAG 2 cut(s) 111, 431
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 325, 346
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 2 cut(s) 60, 274
TaqI TCGA 4 cut(s) 127, 165, 172, 204
TasI AATT 4 cut(s) 129, 168, 284, 369
TatI WGTACW 1 cut(s) 192
Tru1I TTAA 2 cut(s) 62, 475
Tru9I TTAA 2 cut(s) 62, 475
TscAI CASTG 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 142, 362
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 1 cut(s) 168
XmaJI CCTAGG 1 cut(s) 430
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 2 cut(s) 111, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.