Rorug05G0348300

Carbohydrate-binding protein of the ER

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
43139166 .. 43139794
629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0348300.1

Sequence Viewer

Length: 243 bp
ATGGGGTCTCTTCTAAGGTGTCCACTTACTGATCAAACTCTCAATGAGAATTCAAGGTATGTTTGTTCTCATGGGATGGGACTTATATCAGATGAACTCTATGGGGCAGCTAATAATGAGTATATTTCTATGCAAGGAATTAGTTTTCTATTTTTATGTAGAGACTTATCCAACCCTCTTTTGCTGACCGAACAACATGTAGCACAGATGGGACTGCCTGTATTTCATTTGGCCAGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

8.8

Weight (kDa)

4.97

Isoelectric Point (pI)

20.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 1 cut(s) 54
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 2 cut(s) 12, 156
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 49
BalI TGGCCA 1 cut(s) 233
BbvI GCAGC 1 cut(s) 119
BccI CCATC 2 cut(s) 70, 202
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 12, 156
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 119
BshFI GGCC 1 cut(s) 233
BslFI GGGAC 2 cut(s) 93, 225
BsmAI GTCTC 2 cut(s) 12, 156
BsmFI GGGAC 2 cut(s) 93, 225
BsnI GGCC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 31
BspANI GGCC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 234
BssMI GATC 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 81
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 2 cut(s) 12, 156
BstMBI GATC 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 119
BsuRI GGCC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 241
CviAII CATG 2 cut(s) 71, 197
CviJI RGCY 2 cut(s) 110, 233
CviKI_1 RGCY 2 cut(s) 110, 233
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 49
FaeI CATG 2 cut(s) 74, 200
FaiI YATR 8 cut(s) 60, 72, 86, 102, 123, 131, 157, 198
FaqI GGGAC 2 cut(s) 93, 225
FatI CATG 2 cut(s) 70, 196
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 1 cut(s) 233
Hin1II CATG 2 cut(s) 74, 200
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 133
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 2 cut(s) 74, 200
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 1 cut(s) 231
Lsp1109I GCAGC 1 cut(s) 119
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 2 cut(s) 49, 138
MluNI TGGCCA 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 1 cut(s) 186
Mox20I TGGCCA 1 cut(s) 233
MscI TGGCCA 1 cut(s) 233
Msp20I TGGCCA 1 cut(s) 233
NdeII GATC 1 cut(s) 31
NlaIII CATG 2 cut(s) 74, 200
NspI RCATGY 1 cut(s) 200
PciI ACATGT 1 cut(s) 196
PkrI GCNGC 1 cut(s) 109
PscI ACATGT 1 cut(s) 196
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 31
SetI ASST 3 cut(s) 20, 59, 112
SgeI CNNG 5 cut(s) 66, 83, 146, 209, 230
Sse9I AATT 2 cut(s) 49, 138
TaqII GACCGA 1 cut(s) 203
TasI AATT 2 cut(s) 49, 138
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 108, 215
TspRI CASTG 1 cut(s) 241
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.