Rmu_ssc0000409.1_g000030

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000409.1
OG0001437
Physical Location & Seq
Forward (+)
108597 .. 109433
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000409.1_g000030.1.cds

Sequence Viewer

Length: 555 bp
atggctagtagctccatagtagtcttactcttcccacttttagctctagctctattatgtgcattggcagccgataattttctgagcatagattgcgggtcatatgattcctacaccgataaaaatttgatcaactgggttggagacgatgcctttgttcagaacggcaagtctcaagtggtgcagatccccaatggagtctctcaagaaatgagcactttgagagtgtttacaaccaggaagaaaaactgttactccattgatgcagaaaagggagctcagtttcttgtgcgtggaagtttctactacggaaactatgacaaaaaatcagctcctccttcctttgatgttcttttggatgggaatttttttgacacaattcagactacagctgaggatgttatttattttgaagctatatatgtcgcaagaagcggctctatacagctatgtcttgctcaatctaagcctcaccagtttccatttatatccgcgattgagatccggggcctggcactactacaaatttccccaaagcacactgatttaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

184

Amino Acids

20.3

Weight (kDa)

5.05

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 494
AciI CCGC 3 cut(s) 96, 435, 492
AclWI GGATC 2 cut(s) 181, 496
AcsI RAATTY 3 cut(s) 124, 364, 525
AfiI CCNNNNNNNGG 1 cut(s) 511
AgsI TTSAA 1 cut(s) 413
AjnI CCWGG 2 cut(s) 236, 510
AluBI AGCT 8 cut(s) 12, 44, 50, 278, 332, 392, 416, 448
AluI AGCT 8 cut(s) 12, 44, 50, 278, 332, 392, 416, 448
Alw21I GWGCWC 2 cut(s) 218, 280
Alw26I GTCTC 3 cut(s) 138, 177, 205
AlwI GGATC 2 cut(s) 181, 496
AoxI GGCC 1 cut(s) 508
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 3 cut(s) 124, 364, 525
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AspS9I GGNCC 1 cut(s) 508
AsuC2I CCSGG 1 cut(s) 506
AsuHPI GGTGA 1 cut(s) 464
BanII GRGCYC 1 cut(s) 280
Bbv12I GWGCWC 2 cut(s) 218, 280
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 80
BccI CCATC 1 cut(s) 353
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 2 cut(s) 238, 512
BclI TGATCA 1 cut(s) 129
BcnI CCSGG 1 cut(s) 506
BcoDI GTCTC 3 cut(s) 138, 177, 205
BfaI CTAG 2 cut(s) 6, 47
BfmI CTRYAG 1 cut(s) 387
BisI GCNGC 2 cut(s) 69, 436
BlsI GCNGC 2 cut(s) 70, 437
Bme1390I CCNGG 3 cut(s) 238, 506, 512
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 1 cut(s) 509
BmrFI CCNGG 3 cut(s) 238, 506, 512
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 139, 253
BmuI ACTGGG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 393
BpuEI CTTGAG 2 cut(s) 159, 189
BpuMI CCSGG 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 505
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse1I ACTGG 2 cut(s) 140, 475
Bse8I GATNNNNATC 1 cut(s) 500
BseBI CCWGG 2 cut(s) 238, 512
BseDI CCNNGG 1 cut(s) 505
BseGI GGATG 2 cut(s) 364, 403
BseJI GATNNNNATC 1 cut(s) 500
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMII CTCAG 3 cut(s) 74, 293, 384
BseNI ACTGG 2 cut(s) 140, 475
BseRI GAGGAG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 80
BsgI GTGCAG 1 cut(s) 203
Bsh1236I CGCG 1 cut(s) 494
BshFI GGCC 1 cut(s) 510
BsiHKAI GWGCWC 2 cut(s) 218, 280
BsiSI CCGG 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 3 cut(s) 138, 177, 205
BsmBI CGTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 510
Bsp1286I GDGCHC 2 cut(s) 218, 280
Bsp143I GATC 3 cut(s) 129, 186, 501
BspACI CCGC 3 cut(s) 96, 435, 492
BspANI GGCC 1 cut(s) 510
BspCNI CTCAG 3 cut(s) 75, 292, 385
BspFNI CGCG 1 cut(s) 494
BspLI GGNNCC 1 cut(s) 509
BspPI GGATC 2 cut(s) 181, 496
BsrI ACTGG 2 cut(s) 140, 475
BssECI CCNNGG 1 cut(s) 505
BssMI GATC 3 cut(s) 129, 186, 501
Bst2UI CCWGG 2 cut(s) 238, 512
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 93
BstDEI CTNAG 4 cut(s) 83, 279, 393, 465
BstF5I GGATG 2 cut(s) 364, 403
BstFNI CGCG 1 cut(s) 494
BstKTI GATC 3 cut(s) 132, 189, 504
BstMAI GTCTC 3 cut(s) 138, 177, 205
BstMBI GATC 3 cut(s) 129, 186, 501
BstMWI GCNNNNNNNGC 2 cut(s) 68, 93
BstNI CCWGG 2 cut(s) 238, 512
BstSCI CCNGG 3 cut(s) 236, 504, 510
BstSFI CTRYAG 1 cut(s) 387
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 1 cut(s) 80
BstX2I RGATCY 2 cut(s) 186, 501
BstYI RGATCY 2 cut(s) 186, 501
BsuRI GGCC 1 cut(s) 510
BtsCI GGATG 2 cut(s) 364, 403
BtsIMutI CAGTG 1 cut(s) 540
Cfr13I GGNCC 1 cut(s) 508
DdeI CTNAG 4 cut(s) 83, 279, 393, 465
DpnI GATC 3 cut(s) 131, 188, 503
DpnII GATC 3 cut(s) 129, 186, 501
DraI TTTAAA 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 508
EcoRII CCWGG 2 cut(s) 236, 510
EcoT38I GRGCYC 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 138
FauI CCCGC 1 cut(s) 89
FauNDI CATATG 1 cut(s) 103
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 69, 436
FokI GGATG 2 cut(s) 371, 410
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 2 cut(s) 69, 436
FspBI CTAG 2 cut(s) 6, 47
GluI GCNGC 2 cut(s) 69, 436
HaeIII GGCC 1 cut(s) 510
HapII CCGG 1 cut(s) 505
HinfI GANTC 2 cut(s) 107, 198
HpaII CCGG 1 cut(s) 505
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 3 cut(s) 84, 162, 384
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 231
HpyAV CCTTC 1 cut(s) 348
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 3 cut(s) 62, 184, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 93
HpyF3I CTNAG 4 cut(s) 83, 279, 393, 465
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 3 cut(s) 129, 186, 501
LmnI GCTCC 3 cut(s) 17, 275, 337
LpnPI CCDG 7 cut(s) 121, 223, 250, 488, 497, 518, 524
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 2 cut(s) 139, 253
MaeI CTAG 2 cut(s) 6, 47
MaeIII GTNAC 1 cut(s) 251
MalI GATC 3 cut(s) 131, 188, 503
MboI GATC 3 cut(s) 129, 186, 501
MboII GAAGA 2 cut(s) 22, 253
MflI RGATCY 2 cut(s) 186, 501
MhlI GDGCHC 2 cut(s) 218, 280
MluCI AATT 6 cut(s) 76, 124, 364, 378, 525, 550
MlyI GAGTC 1 cut(s) 207
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 3 cut(s) 345, 388, 480
MseI TTAA 1 cut(s) 548
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 1 cut(s) 505
MspR9I CCNGG 3 cut(s) 238, 506, 512
MvaI CCWGG 2 cut(s) 238, 512
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 2 cut(s) 68, 93
NciI CCSGG 1 cut(s) 506
NdeI CATATG 1 cut(s) 103
NdeII GATC 3 cut(s) 129, 186, 501
NlaIV GGNNCC 1 cut(s) 509
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 70, 437
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
Psp124BI GAGCTC 1 cut(s) 280
Psp6I CCWGG 2 cut(s) 236, 510
PspGI CCWGG 2 cut(s) 236, 510
PspN4I GGNNCC 1 cut(s) 509
PspPI GGNCC 1 cut(s) 508
PsuI RGATCY 2 cut(s) 186, 501
PvuII CAGCTG 1 cut(s) 392
SacI GAGCTC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 548
SatI GCNGC 2 cut(s) 69, 436
Sau3AI GATC 3 cut(s) 129, 186, 501
Sau96I GGNCC 1 cut(s) 508
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 3 cut(s) 238, 506, 512
SduI GDGCHC 2 cut(s) 218, 280
SetI ASST 8 cut(s) 14, 46, 52, 280, 334, 394, 418, 450
SfaNI GCATC 2 cut(s) 139, 253
SfcI CTRYAG 1 cut(s) 387
SmiI ATTTAAAT 1 cut(s) 549
SmlI CTYRAG 2 cut(s) 174, 204
SmoI CTYRAG 2 cut(s) 174, 204
Sse9I AATT 6 cut(s) 76, 124, 364, 378, 525, 550
SsiI CCGC 3 cut(s) 96, 435, 492
SspMI CTAG 2 cut(s) 6, 47
SstI GAGCTC 1 cut(s) 280
StyD4I CCNGG 3 cut(s) 236, 504, 510
SwaI ATTTAAAT 1 cut(s) 549
TaaI ACNGT 1 cut(s) 251
TasI AATT 6 cut(s) 76, 124, 364, 378, 525, 550
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TscAI CASTG 1 cut(s) 547
TseI GCWGC 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 547
XapI RAATTY 3 cut(s) 124, 364, 525
XspI CTAG 2 cut(s) 6, 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.