Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001437

Physical Location & Seq

Genomic Coordinates Reverse (-)

36605132 .. 36609533

Gene Structure 4402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1235100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGATGCGCTGCTGGAAATTGATTTTCACAACAACAGCTTGAATGGACCTATTCCGGATTTCCTTGGCTCCTTACCTAATCTAGAACTACTGGATTTGTCAGGGAACAGACTCACTGGATCCACACCTACCTCTCTTTCAAATAACGAAAACCTTACGTTAGAGGAGAGAAAGAGAGAGAATGGGGAAGACCATGGCGGTGGGAGTACATTGCATCATCGCCTTGCAAATTCTGTCCGGTGCGGATCTAGTCAGGTCCGACGGGTCGGATCATCGGTACAAGGAAGGAGATTTTGTCCCTCTGTATGCCAACAAGGTCGGCCCGTTTCACAACCCCAGGTAAAACCCCAGCACTCCACCCTGCTCGATCTCAAAGTTCCATGCTTTCTTAGCTCAGTTCAGCTTCTGGGTTTGTTCATTTCACTGTTAATCGTTATGTATCTGAGTTTATTCCCACCCATTTGTTTGGTTACTGAGAAAATTTGCATGCTTTACAAGTTCTGGTTCAACTCGTATAAGCTAGACATTGTGATTTGGAAATTGAATTTTCATTGGCTATGCTTTTTCAATTATTGTTTCATCTTTTCTGCCCCACAAATGCTGCATGTGAGTTTAAAAAACCAAGAACACAAGATGAACATTGCTTCCCCACCCCCCCCCAACATCACATTTATTATCTCTTTTTCGAATGGCCCTTCGTTGCTTCCATCACGCAACTGTGGCATCCCTCTTGTCCTCTATCTTTTTGAGGAATGGATCTTCGCATTTATTATCTCTGTTCGAGGAATGGGTCTTCGCATTTTTTCTTTTGGTTGTTTTTTCATAGGCTTCGAATGTAGCACAGAGGGCAGTACATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin_like

Protein Analysis

287

Amino Acids

32.24

Weight (kDa)

8.01

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24485 AT1G24485 AT1G24485 AT1G24485 AT3G46240 AT3G46260 AT3G46270 AT3G46270 AT3G46280
fragaria_vesca	FvH4_3g34600 FvH4_3g34600 FvH4_3g34610 FvH4_3g34610 FvH4_7g34060 FvH4_7g34060
malus_domestica	MD06G1235100.v1.1 MD11G1117200.v1.1
prunus_persica	Prupe.2G327000_v2.0.a1 Prupe.2G327000_v2.0.a1 Prupe.5G239900_v2.0.a1 Prupe.6G087500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0062321 RchiOBHm_Chr7g0177641 RchiOBHm_Chr7g0177651
rosa_laevigata	RLG00000005517 RLG00000026048 RLG00000035549
rosa_multiflora	Rmu_sc0006298.1_g000001 Rmu_ssc0000236.1_g000001 Rmu_ssc0000409.1_g000030 Rmu_ssc0000409.1_g000031
rosa_roxburghii	Rroxscaffold_1G00018380 Rroxscaffold_3G00275690 Rroxscaffold_3G00275700 Rroxscaffold_4G00276770
rosa_rugosa	Rorug01G0446900 Rorug05G0348200 Rorug05G0348300 Rorug06G0408300
rosa_samantha	Rh1CG442900 Rh5AG408300 Rh5BG422000 Rh5CG446000 Rh5DG437000 Rh7AG007700 Rh7BG007500 Rh7BG007600 Rh7CG008100 Rh7DG007800
rosa_wichuraiana	Rw0G008230 Rw5G038470 Rw7G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	2 cut(s)	198, 243
AclWI	GGATC	5 cut(s)	114, 127, 253, 277, 764
AcsI	RAATTY	3 cut(s)	229, 480, 544
AfaI	GTAC	3 cut(s)	208, 279, 853
AgsI	TTSAA	5 cut(s)	43, 141, 508, 544, 568
AjnI	CCWGG	1 cut(s)	336
AloI	GAACNNNNNNTCC	2 cut(s)	629, 661
AluBI	AGCT	4 cut(s)	39, 393, 403, 520
AluI	AGCT	4 cut(s)	39, 393, 403, 520
AlwI	GGATC	5 cut(s)	114, 127, 253, 277, 764
AlwNI	CAGNNNCTG	1 cut(s)	406
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	2 cut(s)	320, 691
ApeKI	GCWGC	2 cut(s)	10, 601
ApoI	RAATTY	3 cut(s)	229, 480, 544
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	4 cut(s)	47, 256, 321, 692
AsuII	TTCGAA	2 cut(s)	686, 831
AvaII	GGWCC	2 cut(s)	47, 256
BamHI	GGATCC	1 cut(s)	119
BbsI	GAAGAC	2 cut(s)	195, 785
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	1 cut(s)	715
BciT130I	CCWGG	1 cut(s)	338
BfaI	CTAG	3 cut(s)	83, 249, 521
BisI	GCNGC	2 cut(s)	11, 602
BlsI	GCNGC	2 cut(s)	12, 603
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	2 cut(s)	47, 256
BmgT120I	GGNCC	4 cut(s)	47, 256, 321, 692
BmiI	GGNNCC	2 cut(s)	70, 121
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	2 cut(s)	223, 732
BpiI	GAAGAC	2 cut(s)	195, 785
Bpu14I	TTCGAA	2 cut(s)	686, 831
BsaJI	CCNNGG	3 cut(s)	64, 193, 336
BsaWI	WCCGGW	2 cut(s)	55, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bse1I	ACTGG	2 cut(s)	96, 121
Bse3DI	GCAATG	2 cut(s)	209, 639
BseAI	TCCGGA	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	3 cut(s)	64, 193, 336
BseGI	GGATG	2 cut(s)	10, 723
BseMI	GCAATG	2 cut(s)	209, 639
BseMII	CTCAG	3 cut(s)	408, 434, 465
BseNI	ACTGG	2 cut(s)	96, 121
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	588
BseYI	CCCAGC	1 cut(s)	348
BshFI	GGCC	2 cut(s)	322, 693
BsiSI	CCGG	2 cut(s)	56, 238
BslFI	GGGAC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	2 cut(s)	322, 693
Bsp119I	TTCGAA	2 cut(s)	686, 831
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	5 cut(s)	119, 245, 269, 367, 756
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	2 cut(s)	198, 243
BspANI	GGCC	2 cut(s)	322, 693
BspCNI	CTCAG	3 cut(s)	407, 435, 466
BspEI	TCCGGA	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	70, 121
BspPI	GGATC	5 cut(s)	114, 127, 253, 277, 764
BspT104I	TTCGAA	2 cut(s)	686, 831
BsrDI	GCAATG	2 cut(s)	209, 639
BsrI	ACTGG	2 cut(s)	96, 121
BssECI	CCNNGG	3 cut(s)	64, 193, 336
BssMI	GATC	5 cut(s)	119, 245, 269, 367, 756
BssT1I	CCWWGG	2 cut(s)	64, 193
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	426, 719
BstBI	TTCGAA	2 cut(s)	686, 831
BstC8I	GCNNGC	1 cut(s)	488
BstDEI	CTNAG	4 cut(s)	389, 394, 443, 474
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	10, 723
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	5 cut(s)	122, 248, 272, 370, 759
BstMBI	GATC	5 cut(s)	119, 245, 269, 367, 756
BstMWI	GCNNNNNNNGC	3 cut(s)	390, 720, 846
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	2 cut(s)	490, 608
BstSCI	CCNGG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	2 cut(s)	195, 785
BstX2I	RGATCY	3 cut(s)	119, 245, 756
BstXI	CCANNNNNNTGG	2 cut(s)	200, 466
BstYI	RGATCY	3 cut(s)	119, 245, 756
BsuRI	GGCC	2 cut(s)	322, 693
BtgI	CCRYGG	1 cut(s)	193
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	10, 723
BtsIMutI	CAGTG	2 cut(s)	114, 422
Cac8I	GCNNGC	1 cut(s)	488
CaiI	CAGNNNCTG	1 cut(s)	406
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	4 cut(s)	47, 256, 321, 692
Csp6I	GTAC	3 cut(s)	207, 278, 852
CviAII	CATG	4 cut(s)	194, 381, 487, 605
CviJI	RGCY	9 cut(s)	39, 69, 322, 393, 403, 520, 556, 693, 828
CviKI_1	RGCY	9 cut(s)	39, 69, 322, 393, 403, 520, 556, 693, 828
CviQI	GTAC	3 cut(s)	207, 278, 852
DdeI	CTNAG	4 cut(s)	389, 394, 443, 474
DpnI	GATC	5 cut(s)	121, 247, 271, 369, 758
DpnII	GATC	5 cut(s)	119, 245, 269, 367, 756
DraI	TTTAAA	1 cut(s)	615
Eco130I	CCWWGG	2 cut(s)	64, 193
Eco47I	GGWCC	2 cut(s)	47, 256
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	2 cut(s)	64, 193
ErhI	CCWWGG	2 cut(s)	64, 193
FaeI	CATG	4 cut(s)	197, 384, 490, 608
FaiI	YATR	9 cut(s)	195, 307, 382, 437, 488, 516, 559, 606, 824
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	4 cut(s)	193, 380, 486, 604
Fnu4HI	GCNGC	2 cut(s)	11, 602
FokI	GGATG	2 cut(s)	17, 710
Fsp4HI	GCNGC	2 cut(s)	11, 602
FspBI	CTAG	3 cut(s)	83, 249, 521
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	2 cut(s)	11, 602
GsaI	CCCAGC	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	322, 693
HapII	CCGG	2 cut(s)	56, 238
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	4 cut(s)	197, 384, 490, 608
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	2 cut(s)	56, 238
Hpy188I	TCNGA	4 cut(s)	260, 269, 444, 860
Hpy188III	TCNNGA	2 cut(s)	56, 83
Hpy99I	CGWCG	1 cut(s)	264
HpyAV	CCTTC	2 cut(s)	279, 705
HpyCH4III	ACNGT	2 cut(s)	426, 719
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	4 cut(s)	214, 227, 486, 604
HpyF10VI	GCNNNNNNNGC	3 cut(s)	390, 720, 846
HpyF3I	CTNAG	4 cut(s)	389, 394, 443, 474
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	4 cut(s)	197, 384, 490, 608
HspAI	GCGC	1 cut(s)	8
Kpn2I	TCCGGA	1 cut(s)	55
Kzo9I	GATC	5 cut(s)	119, 245, 269, 367, 756
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	1 cut(s)	588
LweI	GCATC	2 cut(s)	223, 732
MaeI	CTAG	3 cut(s)	83, 249, 521
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	5 cut(s)	121, 247, 271, 369, 758
MboI	GATC	5 cut(s)	119, 245, 269, 367, 756
MboII	GAAGA	3 cut(s)	200, 751, 785
MflI	RGATCY	3 cut(s)	119, 245, 756
MluCI	AATT	6 cut(s)	18, 229, 480, 539, 544, 568
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	2 cut(s)	247, 283
MnlI	CCTC	8 cut(s)	142, 157, 310, 738, 742, 746, 776, 838
MroI	TCCGGA	1 cut(s)	55
MseI	TTAA	2 cut(s)	428, 614
MslI	CAYNNNNRTG	1 cut(s)	198
MspI	CCGG	2 cut(s)	56, 238
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	3 cut(s)	390, 720, 846
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	5 cut(s)	119, 245, 269, 367, 756
NlaIII	CATG	4 cut(s)	197, 384, 490, 608
NlaIV	GGNNCC	2 cut(s)	70, 121
NspI	RCATGY	2 cut(s)	490, 608
NspV	TTCGAA	2 cut(s)	686, 831
PaeI	GCATGC	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	12, 603
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	2 cut(s)	70, 121
PspPI	GGNCC	4 cut(s)	47, 256, 321, 692
PstNI	CAGNNNCTG	1 cut(s)	406
PsuI	RGATCY	3 cut(s)	119, 245, 756
RsaI	GTAC	3 cut(s)	208, 279, 853
RsaNI	GTAC	3 cut(s)	207, 278, 852
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	428, 614
SatI	GCNGC	2 cut(s)	11, 602
Sau3AI	GATC	5 cut(s)	119, 245, 269, 367, 756
Sau96I	GGNCC	4 cut(s)	47, 256, 321, 692
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	338
SfaNI	GCATC	2 cut(s)	223, 732
SfuI	TTCGAA	2 cut(s)	686, 831
SinI	GGWCC	2 cut(s)	47, 256
SmiMI	CAYNNNNRTG	1 cut(s)	198
SphI	GCATGC	1 cut(s)	490
Sse9I	AATT	6 cut(s)	18, 229, 480, 539, 544, 568
SsiI	CCGC	2 cut(s)	198, 243
SspMI	CTAG	3 cut(s)	83, 249, 521
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	64, 193
TaaI	ACNGT	2 cut(s)	426, 719
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	4 cut(s)	366, 686, 781, 831
TasI	AATT	6 cut(s)	18, 229, 480, 539, 544, 568
TatI	WGTACW	2 cut(s)	206, 851
Tru1I	TTAA	2 cut(s)	428, 614
Tru9I	TTAA	2 cut(s)	428, 614
TscAI	CASTG	2 cut(s)	121, 429
TseI	GCWGC	2 cut(s)	10, 601
TspDTI	ATGAA	5 cut(s)	406, 539, 568, 650, 811
TspRI	CASTG	2 cut(s)	121, 429
VpaK11BI	GGWCC	2 cut(s)	47, 256
XapI	RAATTY	3 cut(s)	229, 480, 544
XbaI	TCTAGA	1 cut(s)	82
XceI	RCATGY	2 cut(s)	490, 608
XspI	CTAG	3 cut(s)	83, 249, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.