AT3G48820

Glycosyltransferase family 29 (sialyltransferase)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
18099712 .. 18102941
3230 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48820.1

Sequence Viewer

Length: 1323 bp
ATGAAGCTCTTGCATCTGATATTCTTATTAGCTTTGACTACTGGAATCTCTGCTGTTCTAATCTACATTATCGGCGTCTCTAATCTCTACGAGTCTAATCGTTTTACCAATGAAGATTTAGAGGCGTTGCAGTCTTTGCAGAACGGATTCCAGAAGTGCGTAAGTGCAAATGGTTTGGGACTACAAGCTGCTATGGGTAGAGATTATTGCAAAGTTTCTATAAACTTCCCTAAGGATACTGTCCCCAAATGGAAAGATCCCAAGTCTGGAGAGCTTGAAGGATTGTCATATGAGTTTGACCTGTGTGAAGCAGTAGCTACATGGGAACAAGTCAGGAATAGCTCTACAATACTCACCAAGGAATACATTGATGCCTTACCAAATGGATGGGAGGATTATGCATGGCGCAGAATCAATAAAGGAATTCAACTTAATCGTTGCCAGAATAAATCTTTATGCATTGAGAAGCTTTCATTGGTGCTTCCTGAAACACCACCATATTTCCCCCGGCAGTTTGGGCGATGTGCTGTTATTGGTAACTCTGGTGATCTCTTAAAAACAAAGTTCGGAAAGGAGATAGATACTTATGATACGGTTCTAAGAGAAAATGGTGCTCCTATTCAGAACTACAAGGAATATGTGGGAGAGAAAAGTACATTCCGTCTTCTTAATAGAGGGTCAGCAAAAGCCCTTGACAAAGTCGTGGAGTTGGATGAAAAAAAGCAAGAGGTCCTGCTCGTCAAAACAACAATACATGATATTATGAACAAGATGATTCGGGAAGTCCCAATAAAAAATCCTGTGTACTTAATGCTCGGTGCTTCATTTGGCTCAGCAGCCAAAGGAACTGGGCTCAAGGCTCTTGAGTTTGCTCTCTCGACGTGTGATTCAGTGGATATGTATGGATTCACAGTGGATCCAGGCTATAAAGAGTGGACAAGATATTTTTCAGAATCCCGACAAGGACATACTCCTTTGCATGGAAGAGCTTACTACCAGATGATGGAATGCTTGGGTCTCATTAAAATACACTCTCCCATGAGAGCTGATCCAAACCGTGTCGTGAAATGGGTGCCAAGCCGCAGTACAATTAGATCTGCAAGAATTGCAGCAGAAAAGCTCTTAAGGAGAGTTGGAGCAGGATCTGCAGATCCATTAGCTTCATGCTCCATAGTAAAGAAGAGAAACAAAAACAAGCGTCCAATGGTCTCACACCTCAGAAAACCTGTGAGCGACCATCAAAAATTTGTGAGAAGCACGAGCATGTACCCAGTGGAGCACAGTCCAGGACATGGTCAGCTTTGCATTACACCAGCTGACTAA

Protein Analysis

440

Amino Acids

49.48

Weight (kDa)

9.24

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_29 PF00777 156 - 257 5.2e-20 Glycosyltransferase family 29 (sialyltransferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1072
AccB7I CCANNNNNTGG 2 cut(s) 1003, 1292
AciI CCGC 1 cut(s) 1081
AclWI GGATC 6 cut(s) 251, 911, 924, 1043, 1145, 1150
AcsI RAATTY 2 cut(s) 423, 1244
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 4 cut(s) 655, 806, 1087, 1268
AfiI CCNNNNNNNGG 4 cut(s) 266, 980, 1003, 1292
AflII CTTAAG 1 cut(s) 1123
AflIII ACRYGT 1 cut(s) 881
AgsI TTSAA 2 cut(s) 278, 428
AjiI CACGTC 1 cut(s) 882
AjnI CCWGG 2 cut(s) 919, 1285
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
Alw21I GWGCWC 2 cut(s) 616, 1281
Alw26I GTCTC 3 cut(s) 82, 1022, 1213
AlwI GGATC 6 cut(s) 251, 911, 924, 1043, 1145, 1150
AlwNI CAGNNNCTG 1 cut(s) 1145
ApeKI GCWGC 3 cut(s) 188, 836, 1109
ApoI RAATTY 2 cut(s) 423, 1244
Asp700I GAANNNNTTC 1 cut(s) 146
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 730
AsuC2I CCSGG 1 cut(s) 508
AsuHPI GGTGA 2 cut(s) 346, 557
AvaII GGWCC 1 cut(s) 730
AxyI CCTNAGG 1 cut(s) 231
BamHI GGATCC 1 cut(s) 916
BanI GGYRCC 1 cut(s) 1072
BanII GRGCYC 1 cut(s) 855
BauI CACGAG 1 cut(s) 1258
BbsI GAAGAC 1 cut(s) 656
Bbv12I GWGCWC 2 cut(s) 616, 1281
BbvI GCAGC 3 cut(s) 175, 848, 1121
BccI CCATC 3 cut(s) 381, 997, 1245
BciT130I CCWGG 2 cut(s) 921, 1287
BciVI GTATCC 1 cut(s) 229
BcnI CCSGG 1 cut(s) 508
BcoDI GTCTC 3 cut(s) 82, 1022, 1213
BfmI CTRYAG 1 cut(s) 1146
BfrI CTTAAG 1 cut(s) 1123
BfuI GTATCC 1 cut(s) 229
BglII AGATCT 1 cut(s) 1094
BisI GCNGC 4 cut(s) 189, 837, 1081, 1110
BlpI GCTNAGC 1 cut(s) 832
BlsI GCNGC 4 cut(s) 190, 838, 1082, 1111
Bme1390I CCNGG 3 cut(s) 508, 921, 1287
Bme18I GGWCC 1 cut(s) 730
BmgBI CACGTC 1 cut(s) 882
BmgT120I GGNCC 1 cut(s) 730
BmiI GGNNCC 2 cut(s) 918, 1074
BmrFI CCNGG 3 cut(s) 508, 921, 1287
BmrI ACTGGG 2 cut(s) 858, 1265
BmsI GCATC 2 cut(s) 22, 361
BmuI ACTGGG 2 cut(s) 858, 1265
BpiI GAAGAC 1 cut(s) 656
BpmI CTGGAG 1 cut(s) 288
Bpu1102I GCTNAGC 1 cut(s) 832
BpuEI CTTGAG 2 cut(s) 839, 884
BpuMI CCSGG 1 cut(s) 508
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 2 cut(s) 1022, 1213
BsaJI CCNNGG 2 cut(s) 357, 506
Bsc4I CCNNNNNNNGG 4 cut(s) 266, 980, 1003, 1292
Bse1I ACTGG 3 cut(s) 46, 853, 1271
Bse21I CCTNAGG 1 cut(s) 231
BseBI CCWGG 2 cut(s) 921, 1287
BseDI CCNNGG 2 cut(s) 357, 506
BseGI GGATG 2 cut(s) 392, 718
BseLI CCNNNNNNNGG 4 cut(s) 266, 980, 1003, 1292
BseMII CTCAG 2 cut(s) 846, 1231
BseNI ACTGG 3 cut(s) 46, 853, 1271
BseXI GCAGC 3 cut(s) 175, 848, 1121
BshNI GGYRCC 1 cut(s) 1072
BsiHKAI GWGCWC 2 cut(s) 616, 1281
BsiSI CCGG 1 cut(s) 508
BslFI GGGAC 3 cut(s) 192, 227, 770
BslI CCNNNNNNNGG 4 cut(s) 266, 980, 1003, 1292
BsmAI GTCTC 3 cut(s) 82, 1022, 1213
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 3 cut(s) 192, 227, 770
BsmI GAATGC 1 cut(s) 1013
Bso31I GGTCTC 2 cut(s) 1022, 1213
Bsp1286I GDGCHC 3 cut(s) 616, 855, 1281
Bsp143I GATC 7 cut(s) 256, 547, 916, 1048, 1094, 1142, 1150
Bsp1720I GCTNAGC 1 cut(s) 832
BspACI CCGC 1 cut(s) 1081
BspCNI CTCAG 2 cut(s) 845, 1230
BspLI GGNNCC 2 cut(s) 918, 1074
BspMAI CTGCAG 1 cut(s) 1150
BspPI GGATC 6 cut(s) 251, 911, 924, 1043, 1145, 1150
BspQI GCTCTTC 1 cut(s) 979
BspT107I GGYRCC 1 cut(s) 1072
BspTI CTTAAG 1 cut(s) 1123
BspTNI GGTCTC 2 cut(s) 1022, 1213
BsrI ACTGG 3 cut(s) 46, 853, 1271
BssECI CCNNGG 2 cut(s) 357, 506
BssMI GATC 7 cut(s) 256, 547, 916, 1048, 1094, 1142, 1150
BssNI GRCGYC 1 cut(s) 75
BssSI CACGAG 1 cut(s) 1258
BssT1I CCWWGG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 1258
Bst2UI CCWGG 2 cut(s) 921, 1287
Bst4CI ACNGT 5 cut(s) 241, 595, 913, 1058, 1283
Bst6I CTCTTC 2 cut(s) 979, 1175
BstACI GRCGYC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 1123
BstAPI GCANNNNNTGC 3 cut(s) 136, 1106, 1145
BstDEI CTNAG 4 cut(s) 231, 599, 832, 1217
BstF5I GGATG 2 cut(s) 392, 718
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 7 cut(s) 259, 550, 919, 1051, 1097, 1145, 1153
BstMAI GTCTC 3 cut(s) 82, 1022, 1213
BstMBI GATC 7 cut(s) 256, 547, 916, 1048, 1094, 1142, 1150
BstMWI GCNNNNNNNGC 4 cut(s) 136, 517, 1106, 1145
BstNI CCWGG 2 cut(s) 921, 1287
BstNSI RCATGY 1 cut(s) 1267
BstSCI CCNGG 3 cut(s) 506, 919, 1285
BstSFI CTRYAG 1 cut(s) 1146
BstV1I GCAGC 3 cut(s) 175, 848, 1121
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 5 cut(s) 256, 916, 1094, 1142, 1150
BstXI CCANNNNNNTGG 1 cut(s) 387
BstYI RGATCY 5 cut(s) 256, 916, 1094, 1142, 1150
Bsu36I CCTNAGG 1 cut(s) 231
BsuI GTATCC 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 535
BtrI CACGTC 1 cut(s) 882
BtsCI GGATG 2 cut(s) 392, 718
BtsIMutI CAGTG 3 cut(s) 897, 918, 1278
CaiI CAGNNNCTG 1 cut(s) 1145
CfoI GCGC 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 730
CseI GACGC 2 cut(s) 64, 1187
Csp6I GTAC 4 cut(s) 654, 805, 1086, 1267
CviAII CATG 8 cut(s) 321, 402, 755, 980, 1039, 1164, 1264, 1292
CviQI GTAC 4 cut(s) 654, 805, 1086, 1267
DdeI CTNAG 4 cut(s) 231, 599, 832, 1217
DpnI GATC 7 cut(s) 258, 549, 918, 1050, 1096, 1144, 1152
DpnII GATC 7 cut(s) 256, 547, 916, 1048, 1094, 1142, 1150
Eam1104I CTCTTC 2 cut(s) 979, 1175
EarI CTCTTC 2 cut(s) 979, 1175
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 855
Eco31I GGTCTC 2 cut(s) 1022, 1213
Eco47I GGWCC 1 cut(s) 730
Eco81I CCTNAGG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 730
EcoRI GAATTC 1 cut(s) 423
EcoRII CCWGG 2 cut(s) 919, 1285
EcoT14I CCWWGG 1 cut(s) 357
EcoT22I ATGCAT 2 cut(s) 403, 461
EcoT38I GRGCYC 1 cut(s) 855
ErhI CCWWGG 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 8 cut(s) 324, 405, 758, 983, 1042, 1167, 1267, 1295
FaqI GGGAC 3 cut(s) 192, 227, 770
FatI CATG 8 cut(s) 320, 401, 754, 979, 1038, 1163, 1263, 1291
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 4 cut(s) 189, 837, 1081, 1110
FokI GGATG 2 cut(s) 399, 725
FriOI GRGCYC 1 cut(s) 855
Fsp4HI GCNGC 4 cut(s) 189, 837, 1081, 1110
GlaI GCGC 1 cut(s) 407
GluI GCNGC 4 cut(s) 189, 837, 1081, 1110
GsuI CTGGAG 1 cut(s) 288
HapII CCGG 1 cut(s) 508
HgaI GACGC 2 cut(s) 64, 1187
HhaI GCGC 1 cut(s) 408
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 8 cut(s) 324, 405, 758, 983, 1042, 1167, 1267, 1295
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 8 cut(s) 45, 92, 147, 411, 775, 887, 906, 953
HpaII CCGG 1 cut(s) 508
HphI GGTGA 2 cut(s) 346, 557
Hpy166II GTNNAC 2 cut(s) 805, 936
Hpy188I TCNGA 5 cut(s) 18, 569, 624, 952, 1220
Hpy188III TCNNGA 9 cut(s) 151, 267, 334, 485, 779, 863, 877, 957, 1063
Hpy8I GTNNAC 2 cut(s) 805, 936
Hpy99I CGWCG 1 cut(s) 883
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 5 cut(s) 241, 595, 913, 1058, 1283
HpyCH4IV ACGT 1 cut(s) 881
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 517, 1106, 1145
HpyF3I CTNAG 4 cut(s) 231, 599, 832, 1217
HpySE526I ACGT 1 cut(s) 881
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 8 cut(s) 324, 405, 758, 983, 1042, 1167, 1267, 1295
HspAI GCGC 1 cut(s) 406
Kzo9I GATC 7 cut(s) 256, 547, 916, 1048, 1094, 1142, 1150
LguI GCTCTTC 1 cut(s) 979
LmnI GCTCC 4 cut(s) 619, 1136, 1172, 1276
Lsp1109I GCAGC 3 cut(s) 175, 848, 1121
LweI GCATC 2 cut(s) 22, 361
MaeII ACGT 1 cut(s) 881
MaeIII GTNAC 1 cut(s) 536
MalI GATC 7 cut(s) 258, 549, 918, 1050, 1096, 1144, 1152
MboI GATC 7 cut(s) 256, 547, 916, 1048, 1094, 1142, 1150
MboII GAAGA 4 cut(s) 125, 656, 996, 1192
MflI RGATCY 5 cut(s) 256, 916, 1094, 1142, 1150
MhlI GDGCHC 3 cut(s) 616, 855, 1281
MluCI AATT 4 cut(s) 423, 1089, 1104, 1244
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 2 cut(s) 690, 1114
MnlI CCTC 5 cut(s) 115, 385, 668, 721, 1226
Mph1103I ATGCAT 2 cut(s) 403, 461
MroXI GAANNNNTTC 1 cut(s) 146
MseI TTAA 6 cut(s) 432, 554, 669, 809, 1023, 1124
MslI CAYNNNNRTG 1 cut(s) 1262
MspA1I CMGCKG 1 cut(s) 1316
MspCI CTTAAG 1 cut(s) 1123
MspI CCGG 1 cut(s) 508
MspR9I CCNGG 3 cut(s) 508, 921, 1287
Mva1269I GAATGC 1 cut(s) 1013
MvaI CCWGG 2 cut(s) 921, 1287
MwoI GCNNNNNNNGC 4 cut(s) 136, 517, 1106, 1145
NciI CCSGG 1 cut(s) 508
NdeI CATATG 1 cut(s) 289
NdeII GATC 7 cut(s) 256, 547, 916, 1048, 1094, 1142, 1150
NlaIII CATG 8 cut(s) 324, 405, 758, 983, 1042, 1167, 1267, 1295
NlaIV GGNNCC 2 cut(s) 918, 1074
NsiI ATGCAT 2 cut(s) 403, 461
NspI RCATGY 1 cut(s) 1267
PciSI GCTCTTC 1 cut(s) 979
PctI GAATGC 1 cut(s) 1013
PdmI GAANNNNTTC 1 cut(s) 146
PfeI GAWTC 7 cut(s) 45, 147, 411, 775, 887, 906, 953
PflFI GACNNNGTC 2 cut(s) 698, 1293
PflMI CCANNNNNTGG 2 cut(s) 1003, 1292
PfoI TCCNGGA 1 cut(s) 1285
PkrI GCNGC 4 cut(s) 190, 838, 1082, 1111
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 730
Psp5II RGGWCCY 1 cut(s) 730
Psp6I CCWGG 2 cut(s) 919, 1285
PspGI CCWGG 2 cut(s) 919, 1285
PspN4I GGNNCC 2 cut(s) 918, 1074
PspPI GGNCC 1 cut(s) 730
PspPPI RGGWCCY 1 cut(s) 730
PstI CTGCAG 1 cut(s) 1150
PstNI CAGNNNCTG 1 cut(s) 1145
PsuI RGATCY 5 cut(s) 256, 916, 1094, 1142, 1150
PsyI GACNNNGTC 2 cut(s) 698, 1293
PvuII CAGCTG 1 cut(s) 1316
RsaI GTAC 4 cut(s) 655, 806, 1087, 1268
RsaNI GTAC 4 cut(s) 654, 805, 1086, 1267
RseI CAYNNNNRTG 1 cut(s) 1262
SapI GCTCTTC 1 cut(s) 979
SaqAI TTAA 6 cut(s) 432, 554, 669, 809, 1023, 1124
SatI GCNGC 4 cut(s) 189, 837, 1081, 1110
Sau3AI GATC 7 cut(s) 256, 547, 916, 1048, 1094, 1142, 1150
Sau96I GGNCC 1 cut(s) 730
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 3 cut(s) 508, 921, 1287
SduI GDGCHC 3 cut(s) 616, 855, 1281
SfaNI GCATC 2 cut(s) 22, 361
SfcI CTRYAG 1 cut(s) 1146
SinI GGWCC 1 cut(s) 730
SmiMI CAYNNNNRTG 1 cut(s) 1262
SmlI CTYRAG 3 cut(s) 854, 863, 1123
SmoI CTYRAG 3 cut(s) 854, 863, 1123
Sse9I AATT 4 cut(s) 423, 1089, 1104, 1244
SsiI CCGC 1 cut(s) 1081
StyD4I CCNGG 3 cut(s) 506, 919, 1285
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 5 cut(s) 241, 595, 913, 1058, 1283
TaiI ACGT 1 cut(s) 884
TaqI TCGA 1 cut(s) 878
TasI AATT 4 cut(s) 423, 1089, 1104, 1244
TatI WGTACW 3 cut(s) 653, 804, 1085
TauI GCSGC 1 cut(s) 1083
TfiI GAWTC 7 cut(s) 45, 147, 411, 775, 887, 906, 953
Tru1I TTAA 6 cut(s) 432, 554, 669, 809, 1023, 1124
Tru9I TTAA 6 cut(s) 432, 554, 669, 809, 1023, 1124
TscAI CASTG 3 cut(s) 897, 918, 1278
TseI GCWGC 3 cut(s) 188, 836, 1109
TspDTI ATGAA 7 cut(s) 17, 126, 462, 729, 779, 813, 1152
TspGWI ACGGA 2 cut(s) 159, 650
TspRI CASTG 3 cut(s) 897, 918, 1278
Tth111I GACNNNGTC 2 cut(s) 698, 1293
Van91I CCANNNNNTGG 2 cut(s) 1003, 1292
Vha464I CTTAAG 1 cut(s) 1123
VpaK11BI GGWCC 1 cut(s) 730
XapI RAATTY 2 cut(s) 423, 1244
XceI RCATGY 1 cut(s) 1267
XmnI GAANNNNTTC 1 cut(s) 146
Zsp2I ATGCAT 2 cut(s) 403, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.