MD06G1133300.v1.1

Glycosyltransferase family 29 (sialyltransferase)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
27772426 .. 27776486
4061 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1133300.v1.1.491

Sequence Viewer

Length: 1314 bp
ATGAGGCTTTTGCGGTTGGCGTTCGTGGTTTCTGTACTGTTCGGATTGGTCGCCATTCTCATCTACATCATCGGCGTCGCCGATCTCTATGAGACGCATCGGCTTACGGAAGAAGATGTGGAGGCGCTGCATTCTTTGCAGACCGGTTTCCAGAAGTGTGTGGCTGCAAATGGATTAGGTTTGCAAGCCGCGCTCGGTAAAGATTACTGTCAAGTCATAATGCAGTTTCCTGCTGACACCATTCCTAAATGGAAAGATATTAAAACCGGTGAGCTTGAAGGCTTATCTTATGAGTTTGATCTTTGTGAGGCTGTGGCTACATGGGAACAGGTGCGGAATAGTACCACAATACTGACCAGGGAGTTCATTGACTCTTTACCAAACGGATGGGAGGATTATGCGTGGCGTAGGATTAACAAAGGAGATCACCTCAACCGCTGTAAGAACAAGACACTATGCGTGGAAAAACTTTCACTGGTACTCCCTGCAACACCACCATATGTTCCACGGATGTTTCGCCGATGTGCTGTGATTGGAAACTCAGGAGATCTTTTGCAAACAAGGTTTGGAAAGGAGATTGATGGCTATGATGTTGTTATTAGAGAAAATGGTGCACCAATTCAGAACTACACTGAATACGTGGGGAAGAAATGCACATTTCGGCTTCTTAATAGGGGATCTGCTAAAGCTCTTGATAAAGTCGTGATGTTAGACGAGTCAAGAAAGGAAGCATTGATCATCAAAACAACAATTCATGACGCCATGAACCAGATGATTCGGGAAATTCCTATAAAAAATCATGTATATCTCCTGCTAGGTGCTTCCTTTGGTTCTGCCGCAAAAGGAACTGGGCTCAAGGCTCTTGAATTTGGGCTCTCTATATGTGACTCAGTAGATATGTATGGTTTCACTGTTGATCCGGGATATAAAGAATGGACTAGATATTTCTCAGAAGCCCGACAAGGCCATACTCCTCTACATGGTAGGGCATACTACCAGATGATGGAGTGTTTGGGCCTTATCAAAATTCATTCGCCTATTCGAGCTGATCCAAACCGTGTTGTGCAATGGGTACCAGAACGAAGTTTAGTAACTGCTGCTAGAATTGCATCCGAGAAATTGTTGAGGAGGATTGGAGCAGGGTATGTAGATCCACTGCGTATGTGTTCAATTGTAAAGAAGCAAGTCAACCTAAAGCTGACATCATTTCTAAGTCTAAGAAAGGCCGCTATTAACCATCAGAAATATGTGAAAAGTGCAACCTTATACCCTCTGGAGCGTAGTCCTCGGCATGGTATGCTTTGCACTGTGTGA

Protein Analysis

438

Amino Acids

49.34

Weight (kDa)

9.14

Isoelectric Point (pI)

28.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_29 PF00777 160 - 249 1.2e-19 Glycosyltransferase family 29 (sialyltransferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1072
AccB1I GGYRCC 1 cut(s) 1072
AccB7I CCANNNNNTGG 1 cut(s) 1003
AccII CGCG 1 cut(s) 191
AciI CCGC 6 cut(s) 13, 189, 334, 436, 837, 1227
AclWI GGATC 4 cut(s) 685, 911, 1043, 1145
AcsI RAATTY 3 cut(s) 783, 866, 1026
AcyI GRCGYC 2 cut(s) 75, 759
AdeI CACNNNGTG 1 cut(s) 1311
AfaI GTAC 4 cut(s) 36, 343, 480, 1074
AfiI CCNNNNNNNGG 3 cut(s) 980, 1003, 1292
AgeI ACCGGT 2 cut(s) 143, 266
AgsI TTSAA 3 cut(s) 278, 866, 1170
AjnI CCWGG 1 cut(s) 356
AluBI AGCT 4 cut(s) 274, 689, 1046, 1198
AluI AGCT 4 cut(s) 274, 689, 1046, 1198
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 1 cut(s) 86
Alw44I GTGCAC 1 cut(s) 612
AlwI GGATC 4 cut(s) 685, 911, 1043, 1145
AoxI GGCC 3 cut(s) 964, 1015, 1224
ApaLI GTGCAC 1 cut(s) 612
ApeKI GCWGC 3 cut(s) 127, 164, 1097
ApoI RAATTY 3 cut(s) 783, 866, 1026
AsiGI ACCGGT 2 cut(s) 143, 266
Asp718I GGTACC 1 cut(s) 1072
AspLEI GCGC 2 cut(s) 127, 193
AspS9I GGNCC 1 cut(s) 1015
AsuC2I CCSGG 1 cut(s) 921
AsuHPI GGTGA 2 cut(s) 281, 419
BaeGI GKGCMC 1 cut(s) 616
BanI GGYRCC 1 cut(s) 1072
BanII GRGCYC 2 cut(s) 855, 876
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 3 cut(s) 114, 151, 1084
BccI CCATC 4 cut(s) 381, 575, 997, 1245
BciT130I CCWGG 1 cut(s) 358
BclI TGATCA 1 cut(s) 735
BcnI CCSGG 1 cut(s) 921
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 3 cut(s) 815, 939, 1101
BfoI RGCGCY 1 cut(s) 128
BglII AGATCT 1 cut(s) 547
BisI GCNGC 6 cut(s) 128, 165, 189, 837, 1098, 1227
BlsI GCNGC 6 cut(s) 129, 166, 190, 838, 1099, 1228
Bme1390I CCNGG 2 cut(s) 358, 921
BmgT120I GGNCC 1 cut(s) 1015
BmiI GGNNCC 1 cut(s) 1074
BmrFI CCNGG 2 cut(s) 358, 921
BmrI ACTGGG 1 cut(s) 858
BmsI GCATC 2 cut(s) 106, 1118
BmuI ACTGGG 1 cut(s) 858
BplI GAGNNNNNCTC 2 cut(s) 414, 446
BpmI CTGGAG 1 cut(s) 1295
BpuEI CTTGAG 1 cut(s) 839
BpuMI CCSGG 1 cut(s) 921
BsaAI YACGTR 1 cut(s) 640
BsaHI GRCGYC 2 cut(s) 75, 759
BsaJI CCNNGG 3 cut(s) 357, 506, 1286
BsaWI WCCGGW 2 cut(s) 143, 266
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 3 cut(s) 980, 1003, 1292
Bse118I RCCGGY 2 cut(s) 143, 266
Bse1I ACTGG 2 cut(s) 480, 853
Bse3DI GCAATG 1 cut(s) 1073
BseBI CCWGG 1 cut(s) 358
BseDI CCNNGG 3 cut(s) 357, 506, 1286
BseGI GGATG 3 cut(s) 392, 516, 1109
BseLI CCNNNNNNNGG 3 cut(s) 980, 1003, 1292
BseMI GCAATG 1 cut(s) 1073
BseMII CTCAG 3 cut(s) 555, 903, 963
BseNI ACTGG 2 cut(s) 480, 853
BseRI GAGGAG 2 cut(s) 963, 1141
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 3 cut(s) 114, 151, 1084
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 3 cut(s) 966, 1017, 1226
BshNI GGYRCC 1 cut(s) 1072
BshTI ACCGGT 2 cut(s) 143, 266
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 3 cut(s) 144, 267, 920
BslI CCNNNNNNNGG 3 cut(s) 980, 1003, 1292
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 3 cut(s) 966, 1017, 1226
Bsp1286I GDGCHC 3 cut(s) 616, 855, 876
Bsp143I GATC 9 cut(s) 82, 298, 424, 547, 677, 735, 916, 1048, 1150
BspACI CCGC 6 cut(s) 13, 189, 334, 436, 837, 1227
BspANI GGCC 3 cut(s) 966, 1017, 1226
BspCNI CTCAG 3 cut(s) 554, 902, 962
BspFNI CGCG 1 cut(s) 191
BspHI TCATGA 1 cut(s) 754
BspLI GGNNCC 1 cut(s) 1074
BspPI GGATC 4 cut(s) 685, 911, 1043, 1145
BspT107I GGYRCC 1 cut(s) 1072
BsrDI GCAATG 1 cut(s) 1073
BsrFI RCCGGY 2 cut(s) 143, 266
BsrI ACTGG 2 cut(s) 480, 853
BssAI RCCGGY 2 cut(s) 143, 266
BssECI CCNNGG 3 cut(s) 357, 506, 1286
BssMI GATC 9 cut(s) 82, 298, 424, 547, 677, 735, 916, 1048, 1150
BssNI GRCGYC 2 cut(s) 75, 759
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 5 cut(s) 39, 209, 913, 1058, 1309
BstACI GRCGYC 2 cut(s) 75, 759
BstAPI GCANNNNNTGC 2 cut(s) 136, 1297
BstBAI YACGTR 1 cut(s) 640
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 5 cut(s) 541, 889, 949, 1211, 1217
BstDSI CCRYGG 1 cut(s) 506
BstF5I GGATG 3 cut(s) 392, 516, 1109
BstFNI CGCG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 2 cut(s) 127, 193
BstKTI GATC 9 cut(s) 85, 301, 427, 550, 680, 738, 919, 1051, 1153
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 9 cut(s) 82, 298, 424, 547, 677, 735, 916, 1048, 1150
BstMWI GCNNNNNNNGC 4 cut(s) 136, 190, 1106, 1297
BstNI CCWGG 1 cut(s) 358
BstSCI CCNGG 2 cut(s) 356, 919
BstSLI GKGCMC 1 cut(s) 616
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 3 cut(s) 114, 151, 1084
BstX2I RGATCY 3 cut(s) 547, 677, 1150
BstXI CCANNNNNNTGG 1 cut(s) 387
BstYI RGATCY 3 cut(s) 547, 677, 1150
BsuRI GGCC 3 cut(s) 966, 1017, 1226
BtgI CCRYGG 1 cut(s) 506
BtsCI GGATG 3 cut(s) 392, 516, 1109
BtsI GCAGTG 1 cut(s) 1154
BtsIMutI CAGTG 5 cut(s) 473, 630, 909, 1154, 1305
Cac8I GCNNGC 1 cut(s) 186
CciI TCATGA 1 cut(s) 754
CfoI GCGC 2 cut(s) 127, 193
Cfr10I RCCGGY 2 cut(s) 143, 266
Cfr13I GGNCC 1 cut(s) 1015
CseI GACGC 3 cut(s) 64, 103, 767
Csp6I GTAC 4 cut(s) 35, 342, 479, 1073
CspAI ACCGGT 2 cut(s) 143, 266
CviAII CATG 6 cut(s) 321, 755, 763, 800, 980, 1292
CviQI GTAC 4 cut(s) 35, 342, 479, 1073
DdeI CTNAG 5 cut(s) 541, 889, 949, 1211, 1217
DpnI GATC 9 cut(s) 84, 300, 426, 549, 679, 737, 918, 1050, 1152
DpnII GATC 9 cut(s) 82, 298, 424, 547, 677, 735, 916, 1048, 1150
DraIII CACNNNGTG 1 cut(s) 1311
Eco24I GRGCYC 2 cut(s) 855, 876
EcoRII CCWGG 1 cut(s) 356
EcoT38I GRGCYC 2 cut(s) 855, 876
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 6 cut(s) 324, 758, 766, 803, 983, 1295
FatI CATG 6 cut(s) 320, 754, 762, 799, 979, 1291
FauNDI CATATG 1 cut(s) 499
FbaI TGATCA 1 cut(s) 735
Fnu4HI GCNGC 6 cut(s) 128, 165, 189, 837, 1098, 1227
FokI GGATG 3 cut(s) 399, 523, 1096
FriOI GRGCYC 2 cut(s) 855, 876
Fsp4HI GCNGC 6 cut(s) 128, 165, 189, 837, 1098, 1227
FspBI CTAG 3 cut(s) 815, 939, 1101
GlaI GCGC 2 cut(s) 126, 192
GluI GCNGC 6 cut(s) 128, 165, 189, 837, 1098, 1227
GsuI CTGGAG 1 cut(s) 1295
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 3 cut(s) 966, 1017, 1226
HapII CCGG 3 cut(s) 144, 267, 920
HgaI GACGC 3 cut(s) 64, 103, 767
HhaI GCGC 2 cut(s) 127, 193
Hin1I GRCGYC 2 cut(s) 75, 759
Hin1II CATG 6 cut(s) 324, 758, 766, 803, 983, 1295
Hin6I GCGC 2 cut(s) 125, 191
HinP1I GCGC 2 cut(s) 125, 191
HincII GTYRAC 1 cut(s) 1189
HindII GTYRAC 1 cut(s) 1189
HinfI GANTC 4 cut(s) 371, 716, 775, 887
HpaII CCGG 3 cut(s) 144, 267, 920
HphI GGTGA 2 cut(s) 281, 419
Hpy166II GTNNAC 2 cut(s) 614, 1189
Hpy188I TCNGA 5 cut(s) 44, 624, 952, 1114, 1242
Hpy188III TCNNGA 9 cut(s) 151, 543, 692, 703, 720, 755, 779, 863, 1274
Hpy8I GTNNAC 2 cut(s) 614, 1189
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 5 cut(s) 39, 209, 913, 1058, 1309
HpyCH4IV ACGT 1 cut(s) 639
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 190, 1106, 1297
HpyF3I CTNAG 5 cut(s) 541, 889, 949, 1211, 1217
HpySE526I ACGT 1 cut(s) 639
Hsp92I GRCGYC 2 cut(s) 75, 759
Hsp92II CATG 6 cut(s) 324, 758, 766, 803, 983, 1295
HspAI GCGC 2 cut(s) 125, 191
KpnI GGTACC 1 cut(s) 1076
Ksp22I TGATCA 1 cut(s) 735
Kzo9I GATC 9 cut(s) 82, 298, 424, 547, 677, 735, 916, 1048, 1150
LmnI GCTCC 2 cut(s) 1136, 1276
Lsp1109I GCAGC 3 cut(s) 114, 151, 1084
LweI GCATC 2 cut(s) 106, 1118
MaeI CTAG 3 cut(s) 815, 939, 1101
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 2 cut(s) 884, 1090
MalI GATC 9 cut(s) 84, 300, 426, 549, 679, 737, 918, 1050, 1152
MboI GATC 9 cut(s) 82, 298, 424, 547, 677, 735, 916, 1048, 1150
MboII GAAGA 3 cut(s) 122, 125, 658
MfeI CAATTG 1 cut(s) 1170
MflI RGATCY 3 cut(s) 547, 677, 1150
MhlI GDGCHC 3 cut(s) 616, 855, 876
MluCI AATT 8 cut(s) 618, 750, 783, 866, 1026, 1104, 1118, 1170
MlyI GAGTC 3 cut(s) 365, 725, 881
MnlI CCTC 9 cut(s) 115, 301, 385, 440, 984, 1119, 1122, 1281, 1296
MseI TTAA 4 cut(s) 261, 414, 669, 1233
MspA1I CMGCKG 1 cut(s) 438
MspI CCGG 3 cut(s) 144, 267, 920
MspR9I CCNGG 2 cut(s) 358, 921
MunI CAATTG 1 cut(s) 1170
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 1 cut(s) 358
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 136, 190, 1106, 1297
NciI CCSGG 1 cut(s) 921
NdeI CATATG 1 cut(s) 499
NdeII GATC 9 cut(s) 82, 298, 424, 547, 677, 735, 916, 1048, 1150
NlaIII CATG 6 cut(s) 324, 758, 766, 803, 983, 1295
NlaIV GGNNCC 1 cut(s) 1074
NmeAIII GCCGAG 1 cut(s) 1267
NmuCI GTSAC 1 cut(s) 884
PagI TCATGA 1 cut(s) 754
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 775
PflMI CCANNNNNTGG 1 cut(s) 1003
PfoI TCCNGGA 1 cut(s) 919
PinAI ACCGGT 2 cut(s) 143, 266
PkrI GCNGC 6 cut(s) 129, 166, 190, 838, 1099, 1228
PleI GAGTC 3 cut(s) 365, 724, 881
PpsI GAGTC 3 cut(s) 365, 724, 881
Ppu21I YACGTR 1 cut(s) 640
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 1074
PspPI GGNCC 1 cut(s) 1015
PsuI RGATCY 3 cut(s) 547, 677, 1150
RsaI GTAC 4 cut(s) 36, 343, 480, 1074
RsaNI GTAC 4 cut(s) 35, 342, 479, 1073
SaqAI TTAA 4 cut(s) 261, 414, 669, 1233
SatI GCNGC 6 cut(s) 128, 165, 189, 837, 1098, 1227
Sau3AI GATC 9 cut(s) 82, 298, 424, 547, 677, 735, 916, 1048, 1150
Sau96I GGNCC 1 cut(s) 1015
SchI GAGTC 3 cut(s) 365, 725, 881
ScrFI CCNGG 2 cut(s) 358, 921
SduI GDGCHC 3 cut(s) 616, 855, 876
SfaNI GCATC 2 cut(s) 106, 1118
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
Sse9I AATT 8 cut(s) 618, 750, 783, 866, 1026, 1104, 1118, 1170
SsiI CCGC 6 cut(s) 13, 189, 334, 436, 837, 1227
SspMI CTAG 3 cut(s) 815, 939, 1101
StyD4I CCNGG 2 cut(s) 356, 919
TaaI ACNGT 5 cut(s) 39, 209, 913, 1058, 1309
TaiI ACGT 1 cut(s) 642
TaqI TCGA 1 cut(s) 1042
TasI AATT 8 cut(s) 618, 750, 783, 866, 1026, 1104, 1118, 1170
TatI WGTACW 1 cut(s) 34
TauI GCSGC 3 cut(s) 191, 839, 1229
TfiI GAWTC 1 cut(s) 775
Tru1I TTAA 4 cut(s) 261, 414, 669, 1233
Tru9I TTAA 4 cut(s) 261, 414, 669, 1233
TscAI CASTG 5 cut(s) 480, 637, 916, 1161, 1312
TseFI GTSAC 1 cut(s) 884
TseI GCWGC 3 cut(s) 127, 164, 1097
Tsp45I GTSAC 1 cut(s) 884
TspDTI ATGAA 4 cut(s) 355, 743, 779, 1019
TspGWI ACGGA 3 cut(s) 122, 399, 523
TspRI CASTG 5 cut(s) 480, 637, 916, 1161, 1312
Van91I CCANNNNNTGG 1 cut(s) 1003
VneI GTGCAC 1 cut(s) 612
XapI RAATTY 3 cut(s) 783, 866, 1026
XspI CTAG 3 cut(s) 815, 939, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.