Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Reverse (-)

8967099 .. 8972285

Gene Structure 5187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G004670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAAGCTGTTGCTGTTAGCGTTCGTCATCGCTTTACCGTTTGGATTGGTCGCCATCCTCATCTACATCACCGGAGTCTTCGATCTCTATAAGCATCTCTCTCTCTCTATCAATCGGCTCACCGATGATGATTTGGAAGCGCTGCAAAATCTGCAGGGCCGTTTCCAGAAATGTGTGGTGATCACCATGAAATTTCCTAGTGACACCATTCCTAAATGGAAAGATCCCAAAACCAATGAGCTTGAAGGTTTATCGTATGAGTTTAATCTGTGTGATGCTTTGGCTACTTGGGAACAGGTGAGTACTGTAATTAATCTATTTCCTGAAACAATATTATTGATGCTCTTCTTGGATATGAAGTTGCATAAAACAAGTGCTTGCAGCATCTACCTTTTTTATTTATTTATTGGCCGTTGTGCTGTTATCGGAAACTTGAGCGATCTTTTAAAAACAAAGTTTGGGAGAGAGATAGATGGCTATGATGCAGTTCTTAGAGAAAATGGTGCACCAATTCAGAACTATACTAATCATGTGGGCAAGAAATGTACATTTTGGCTTCTTAATAGAGGATCCGCTAAAGCTCTTGATAAAGTTGTGGAGTTAGATGAGTCCAGGAAGGAGGTCTTGATCATCAAAACAACAATTCATGACACTATGAACAAGATGATACGGGTTTTCAACGTCCAAATCAAATACAATGGGCCCATGAGAAGAGCAGTGTTTGGTGTAAGTTGCTTCAATTTCTGGAAATTTGCAGTCTCCTTGTGTTATTGCTGCTATATTGATAATGTAAAAAACTCATCAATCCCAAAATTAGATTTTAAACAAATCTACAAAAGGGGAACGTTTGATCTAATGGATAGACATTATTTTAAACTACTGGAAATTACAACCCCCGCTATAGCAGGAGGAGAGACTGATCTTGTCTTACTACTGGTTTCCTCACCAATCAGAAGAACCATTCACAACAGATTCATAAAAGAAACTAATCGAAGAAATGAAGAAATTCAAAATCAGAAAGACGAGAAAAGTCTTTCCTTACCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

350

Amino Acids

40.37

Weight (kDa)

8.98

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_29	PF00777	137 - 225	3.9e-15	Glycosyltransferase family 29 (sialyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	573, 897
AclI	AACGTT	1 cut(s)	845
AclWI	GGATC	3 cut(s)	218, 564, 577
AcoI	YGGCCR	1 cut(s)	409
AcsI	RAATTY	3 cut(s)	191, 749, 1005
AfaI	GTAC	2 cut(s)	304, 547
AfeI	AGCGCT	1 cut(s)	141
AgsI	TTSAA	4 cut(s)	245, 679, 739, 1010
AjnI	CCWGG	1 cut(s)	611
AluBI	AGCT	3 cut(s)	7, 241, 581
AluI	AGCT	3 cut(s)	7, 241, 581
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	2 cut(s)	763, 908
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	3 cut(s)	218, 564, 577
Aor51HI	AGCGCT	1 cut(s)	141
AoxI	GGCC	3 cut(s)	157, 409, 701
ApaI	GGGCCC	1 cut(s)	705
ApaLI	GTGCAC	1 cut(s)	504
ApeKI	GCWGC	3 cut(s)	142, 381, 774
ApoI	RAATTY	3 cut(s)	191, 749, 1005
AseI	ATTAAT	1 cut(s)	312
Asp700I	GAANNNNTTC	1 cut(s)	1005
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	3 cut(s)	157, 701, 702
AsuHPI	GGTGA	6 cut(s)	61, 112, 175, 190, 310, 936
BaeGI	GKGCMC	2 cut(s)	508, 705
BamHI	GGATCC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	3 cut(s)	129, 393, 761
BccI	CCATC	2 cut(s)	62, 467
BceAI	ACGGC	2 cut(s)	144, 396
BciT130I	CCWGG	1 cut(s)	613
BclI	TGATCA	2 cut(s)	180, 627
BcoDI	GTCTC	2 cut(s)	763, 908
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	2 cut(s)	152, 900
BfoI	RGCGCY	1 cut(s)	143
BisI	GCNGC	3 cut(s)	143, 382, 775
BlsI	GCNGC	3 cut(s)	144, 383, 776
BmcAI	AGTACT	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	613
BmgT120I	GGNCC	3 cut(s)	157, 701, 702
BmiI	GGNNCC	2 cut(s)	571, 703
BmrFI	CCNGG	1 cut(s)	613
BmsI	GCATC	5 cut(s)	103, 265, 330, 393, 472
BpiI	GAAGAC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	454
BsaWI	WCCGGW	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	885, 939
BseBI	CCWGG	1 cut(s)	613
BseGI	GGATG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	885, 939
BseRI	GAGGAG	1 cut(s)	924
BseSI	GKGCMC	2 cut(s)	508, 705
BseXI	GCAGC	3 cut(s)	129, 393, 761
BshFI	GGCC	3 cut(s)	159, 411, 703
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	1 cut(s)	72
BsmAI	GTCTC	2 cut(s)	763, 908
BsnI	GGCC	3 cut(s)	159, 411, 703
Bsp120I	GGGCCC	1 cut(s)	701
Bsp1286I	GDGCHC	2 cut(s)	508, 705
Bsp1407I	TGTACA	1 cut(s)	545
Bsp143I	GATC	8 cut(s)	82, 180, 223, 439, 569, 627, 850, 919
BspACI	CCGC	2 cut(s)	573, 897
BspANI	GGCC	3 cut(s)	159, 411, 703
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	571, 703
BspMAI	CTGCAG	1 cut(s)	156
BspPI	GGATC	3 cut(s)	218, 564, 577
BspQI	GCTCTTC	2 cut(s)	350, 706
BsrGI	TGTACA	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	885, 939
BssMI	GATC	8 cut(s)	82, 180, 223, 439, 569, 627, 850, 919
Bst2UI	CCWGG	1 cut(s)	613
Bst4CI	ACNGT	2 cut(s)	39, 307
Bst6I	CTCTTC	2 cut(s)	350, 706
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstAUI	TGTACA	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	1 cut(s)	491
BstF5I	GGATG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	8 cut(s)	85, 183, 226, 442, 572, 630, 853, 922
BstMAI	GTCTC	2 cut(s)	763, 908
BstMBI	GATC	8 cut(s)	82, 180, 223, 439, 569, 627, 850, 919
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	613
BstSCI	CCNGG	1 cut(s)	611
BstSFI	CTRYAG	2 cut(s)	152, 900
BstSLI	GKGCMC	2 cut(s)	508, 705
BstV1I	GCAGC	3 cut(s)	129, 393, 761
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	223, 569
BstYI	RGATCY	2 cut(s)	223, 569
BsuRI	GGCC	3 cut(s)	159, 411, 703
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	54
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	1 cut(s)	723
Cac8I	GCNNGC	1 cut(s)	379
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	3 cut(s)	157, 701, 702
Csp6I	GTAC	2 cut(s)	303, 546
CviAII	CATG	4 cut(s)	187, 530, 647, 706
CviQI	GTAC	2 cut(s)	303, 546
DdeI	CTNAG	1 cut(s)	491
DpnI	GATC	8 cut(s)	84, 182, 225, 441, 571, 629, 852, 921
DpnII	GATC	8 cut(s)	82, 180, 223, 439, 569, 627, 850, 919
DraI	TTTAAA	3 cut(s)	447, 823, 874
EaeI	YGGCCR	1 cut(s)	409
Eam1104I	CTCTTC	2 cut(s)	350, 706
EarI	CTCTTC	2 cut(s)	350, 706
Eco24I	GRGCYC	1 cut(s)	705
Eco47III	AGCGCT	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	611
EcoT38I	GRGCYC	1 cut(s)	705
FaeI	CATG	4 cut(s)	190, 533, 650, 709
FalI	AAGNNNNNCTT	2 cut(s)	608, 640
FatI	CATG	4 cut(s)	186, 529, 646, 705
FauI	CCCGC	1 cut(s)	904
FbaI	TGATCA	2 cut(s)	180, 627
Fnu4HI	GCNGC	3 cut(s)	143, 382, 775
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	3 cut(s)	143, 382, 775
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	3 cut(s)	143, 382, 775
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	3 cut(s)	159, 411, 703
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	4 cut(s)	190, 533, 650, 709
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	3 cut(s)	75, 608, 972
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	6 cut(s)	61, 112, 175, 190, 310, 936
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	4 cut(s)	428, 516, 953, 1017
Hpy188III	TCNNGA	6 cut(s)	166, 323, 584, 625, 647, 745
Hpy8I	GTNNAC	1 cut(s)	506
HpyAV	CCTTC	2 cut(s)	239, 610
HpyCH4III	ACNGT	2 cut(s)	39, 307
HpyCH4IV	ACGT	2 cut(s)	681, 845
HpyCH4V	TGCA	7 cut(s)	145, 154, 364, 381, 485, 506, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	491
HpySE526I	ACGT	2 cut(s)	681, 845
Hsp92II	CATG	4 cut(s)	190, 533, 650, 709
HspAI	GCGC	1 cut(s)	140
Ksp22I	TGATCA	2 cut(s)	180, 627
Kzo9I	GATC	8 cut(s)	82, 180, 223, 439, 569, 627, 850, 919
LguI	GCTCTTC	2 cut(s)	350, 706
Lsp1109I	GCAGC	3 cut(s)	129, 393, 761
LweI	GCATC	5 cut(s)	103, 265, 330, 393, 472
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	2 cut(s)	681, 845
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	8 cut(s)	84, 182, 225, 441, 571, 629, 852, 921
MboI	GATC	8 cut(s)	82, 180, 223, 439, 569, 627, 850, 919
MboII	GAAGA	6 cut(s)	70, 337, 723, 966, 1005, 1013
MflI	RGATCY	2 cut(s)	223, 569
MhlI	GDGCHC	2 cut(s)	508, 705
MluCI	AATT	9 cut(s)	191, 309, 510, 642, 739, 749, 812, 885, 1005
MlyI	GAGTC	2 cut(s)	84, 617
MnlI	CCTC	5 cut(s)	68, 560, 613, 902, 952
MroXI	GAANNNNTTC	1 cut(s)	1005
MseI	TTAA	6 cut(s)	264, 312, 446, 561, 822, 873
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	613
MvaI	CCWGG	1 cut(s)	613
MwoI	GCNNNNNNNGC	1 cut(s)	151
NdeII	GATC	8 cut(s)	82, 180, 223, 439, 569, 627, 850, 919
NlaIII	CATG	4 cut(s)	190, 533, 650, 709
NlaIV	GGNNCC	2 cut(s)	571, 703
NmuCI	GTSAC	1 cut(s)	200
PagI	TCATGA	1 cut(s)	646
PciSI	GCTCTTC	2 cut(s)	350, 706
PdmI	GAANNNNTTC	1 cut(s)	1005
PfeI	GAWTC	1 cut(s)	972
PfoI	TCCNGGA	1 cut(s)	611
PkrI	GCNGC	3 cut(s)	144, 383, 776
PleI	GAGTC	2 cut(s)	83, 616
PpsI	GAGTC	2 cut(s)	83, 616
PshBI	ATTAAT	1 cut(s)	312
Psp1406I	AACGTT	1 cut(s)	845
Psp6I	CCWGG	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	611
PspN4I	GGNNCC	2 cut(s)	571, 703
PspOMI	GGGCCC	1 cut(s)	701
PspPI	GGNCC	3 cut(s)	157, 701, 702
PstI	CTGCAG	1 cut(s)	156
PsuI	RGATCY	2 cut(s)	223, 569
RsaI	GTAC	2 cut(s)	304, 547
RsaNI	GTAC	2 cut(s)	303, 546
SapI	GCTCTTC	2 cut(s)	350, 706
SaqAI	TTAA	6 cut(s)	264, 312, 446, 561, 822, 873
SatI	GCNGC	3 cut(s)	143, 382, 775
Sau3AI	GATC	8 cut(s)	82, 180, 223, 439, 569, 627, 850, 919
Sau96I	GGNCC	3 cut(s)	157, 701, 702
ScaI	AGTACT	1 cut(s)	304
SchI	GAGTC	2 cut(s)	84, 617
ScrFI	CCNGG	1 cut(s)	613
SduI	GDGCHC	2 cut(s)	508, 705
SetI	ASST	9 cut(s)	9, 243, 250, 300, 393, 583, 624, 684, 848
SfaNI	GCATC	5 cut(s)	103, 265, 330, 393, 472
SfcI	CTRYAG	2 cut(s)	152, 900
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	9 cut(s)	191, 309, 510, 642, 739, 749, 812, 885, 1005
SsiI	CCGC	2 cut(s)	573, 897
SspI	AATATT	1 cut(s)	333
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	611
TaaI	ACNGT	2 cut(s)	39, 307
TaiI	ACGT	2 cut(s)	684, 848
TaqI	TCGA	2 cut(s)	81, 991
TasI	AATT	9 cut(s)	191, 309, 510, 642, 739, 749, 812, 885, 1005
TatI	WGTACW	2 cut(s)	302, 545
TfiI	GAWTC	1 cut(s)	972
Tru1I	TTAA	6 cut(s)	264, 312, 446, 561, 822, 873
Tru9I	TTAA	6 cut(s)	264, 312, 446, 561, 822, 873
TscAI	CASTG	1 cut(s)	723
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	3 cut(s)	142, 381, 774
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	7 cut(s)	17, 203, 371, 635, 671, 964, 1014
TspRI	CASTG	1 cut(s)	723
VneI	GTGCAC	1 cut(s)	504
VspI	ATTAAT	1 cut(s)	312
XapI	RAATTY	3 cut(s)	191, 749, 1005
XmnI	GAANNNNTTC	1 cut(s)	1005
XspI	CTAG	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.