Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Reverse (-)

43591443 .. 43592628

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGACTCATATATTGTCTGAATTTTTATGTACAACGAAAGATCCCAAAACCAATGAGCTTGAAGGTTTATCGTATGAGTTTAATCTGCGTGATGCTTTGGCTACTTGGGAACAGAACTATACTAATCATGTGGGCAAGAAATGTACATTTTGGCTTCTTAATAGAGGATCCGCTAAAGCTCTTGATAAAGTTGTGGAGTTAGATGGTATAAGAACTGGTCCACTTTTAAAAATATGGCATTTTTATTACAAGAGCGCTAAGTATATGCAAATTTTGCAGAGTCCAGAAGGAGGTCTTGATCATCAAAACAACAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

106

Amino Acids

12.24

Weight (kDa)

6.89

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	3 cut(s)	35, 162, 175
AcsI	RAATTY	2 cut(s)	20, 270
AfaI	GTAC	2 cut(s)	31, 145
AfeI	AGCGCT	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	1 cut(s)	62
AluBI	AGCT	2 cut(s)	58, 179
AluI	AGCT	2 cut(s)	58, 179
AlwI	GGATC	3 cut(s)	35, 162, 175
Aor51HI	AGCGCT	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	20, 270
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	167
BccI	CCATC	1 cut(s)	197
BclI	TGATCA	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	169
BmsI	GCATC	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	290
Bsp1407I	TGTACA	2 cut(s)	29, 143
Bsp143I	GATC	3 cut(s)	40, 167, 298
BspACI	CCGC	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	3 cut(s)	35, 162, 175
BsrGI	TGTACA	2 cut(s)	29, 143
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	40, 167, 298
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstAUI	TGTACA	2 cut(s)	29, 143
BstDEI	CTNAG	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	3 cut(s)	43, 170, 301
BstMBI	GATC	3 cut(s)	40, 167, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstX2I	RGATCY	2 cut(s)	40, 167
BstYI	RGATCY	2 cut(s)	40, 167
CciI	TCATGA	1 cut(s)	317
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	30, 144
CviAII	CATG	2 cut(s)	128, 318
CviJI	RGCY	4 cut(s)	58, 101, 154, 179
CviKI_1	RGCY	4 cut(s)	58, 101, 154, 179
CviQI	GTAC	2 cut(s)	30, 144
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	3 cut(s)	42, 169, 300
DpnII	GATC	3 cut(s)	40, 167, 298
DraI	TTTAAA	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	218
Eco47III	AGCGCT	1 cut(s)	256
FaeI	CATG	2 cut(s)	131, 321
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	2 cut(s)	127, 317
FbaI	TGATCA	1 cut(s)	298
GlaI	GCGC	1 cut(s)	256
HaeII	RGCGCY	1 cut(s)	258
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	2 cut(s)	131, 321
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	2 cut(s)	4, 280
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	4 cut(s)	182, 284, 296, 318
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	56, 281
HpyCH4V	TGCA	2 cut(s)	268, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	131, 321
HspAI	GCGC	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	40, 167, 298
LpnPI	CCDG	2 cut(s)	201, 297
LweI	GCATC	1 cut(s)	82
MalI	GATC	3 cut(s)	42, 169, 300
MboI	GATC	3 cut(s)	40, 167, 298
MflI	RGATCY	2 cut(s)	40, 167
MluCI	AATT	3 cut(s)	20, 270, 313
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	2 cut(s)	158, 284
MseI	TTAA	3 cut(s)	81, 159, 227
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	3 cut(s)	40, 167, 298
NlaIII	CATG	2 cut(s)	131, 321
NlaIV	GGNNCC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	317
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	40, 167
RsaI	GTAC	2 cut(s)	31, 145
RsaNI	GTAC	2 cut(s)	30, 144
SaqAI	TTAA	3 cut(s)	81, 159, 227
Sau3AI	GATC	3 cut(s)	40, 167, 298
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	289
SetI	ASST	4 cut(s)	60, 67, 181, 295
SfaNI	GCATC	1 cut(s)	82
SinI	GGWCC	1 cut(s)	218
Sse9I	AATT	3 cut(s)	20, 270, 313
SsiI	CCGC	1 cut(s)	171
TasI	AATT	3 cut(s)	20, 270, 313
TatI	WGTACW	2 cut(s)	29, 143
Tru1I	TTAA	3 cut(s)	81, 159, 227
Tru9I	TTAA	3 cut(s)	81, 159, 227
TspDTI	ATGAA	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	2 cut(s)	20, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.