Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Forward (+)

7687894 .. 7691891

Gene Structure 3998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG102800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGAAGCTGTTGCGGTTAGCGTTCGTCATCGCTTTACTGTTTGGATTGGTCGCTATCCTCATCTACATCACCGGAGTCTCCGATCTCTATGAGATCAATCGGCTCACCGATGATGATTTGGAAGCGCTGCAAAATCTGCAGAGCCGTTTCCAGAAATGTGTGGCTGCGAATGGATTAGGTTTACAAGCTGAGACTAGTAAAGATTACTGCGGAGTCACCATGAAATTTCCTAGTGACACCATTCCTAAATGGAAAGATCCCAAAACCAATGAGCTTGAAGGTTTATCGTATGAGTTTAATCTGTGTGAAGCTTTGGCTACTTGGGAACAGGTGCGGAATAGTACCACCATTCTCACTCGGGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCATGGCGTAGGATTAATAAAGGAGTACTACTTGACCGCTGTAAGAATAAAACTTTGTGTGTGGAGAAACTTTCTCTGGTACTCCCTTTCACACCACCATATGTCCCTCGCATGTTTGGCCGTTGTGCTGTTATCGGAAACTCGGGCGATCTTTTAAAAACAAAGTTTGGGAGAGAGATAGATGGCTATGATGCAGTTGTTAGAGAAAATGGTGCACCAATTCAGAACTATACTGATCATGTGGGCAAGAAATGTACATTTCGGCTTCTTAATAGAGGATCCGCTAAAGCTCTTGATAAAGTTGTGGAGTTAGATGAGTCCAGGAAGGAGGTCTTGATCATCAAAACAACAATTCATGACACTATGAACAAGATGATTCGGGAAATTCCAATAAAAAATCATGTATATCTCATGCTAGGTGCTTCCTTTGGTTCTGCTGCAAAAGGAACTGGTCTCAAGGCTCTTGAATTTGCCCTCTCTATATGCGACTCAGTAGATATGTATGGCTTCACCGTAGATCCTGGATATAAAGAATGGACTAGATACTTCTCAGAATCTCGACAAGGCCATACTCCTCTGCATGGAAGGGCATACTACCAGATGATGGAGTGTTTGGGTCTTATCAAAATTCATTCGCCTGTTCGATCTGATCCAAACCGTGTTGTGCATTGGGCACCAGATCGTAGTACTATTAATGCCGCTAGATTTGCATCAGAGAAATGGTTGAGGAGGATTGGAGCAGGCTATGTAACTCCACTGCGTATGTGTTCATTTGTAAAGAAGCAAATCAAACTAAAGCTTACGCCGTTTCTCAAATTGAGAAAGGCTGCTATCGAGCACCAGGAATATGTGAAAAGCGCAACCCTGTACCCTCTTGAGCACAGTCCTCGCCACGGTATGCTTTGCACTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

437

Amino Acids

49.62

Weight (kDa)

9.17

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_29	PF00777	166 - 261	5.9e-19	Glycosyltransferase family 29 (sialyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1072
AccB7I	CCANNNNNTGG	1 cut(s)	1003
AciI	CCGC	6 cut(s)	13, 210, 334, 436, 681, 1098
AclWI	GGATC	5 cut(s)	251, 672, 685, 911, 1043
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	4 cut(s)	224, 783, 866, 1026
AdeI	CACNNNGTG	1 cut(s)	1311
AfaI	GTAC	6 cut(s)	343, 426, 480, 655, 1087, 1268
AfeI	AGCGCT	1 cut(s)	126
AfiI	CCNNNNNNNGG	3 cut(s)	980, 1003, 1292
AgsI	TTSAA	2 cut(s)	278, 866
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	3 cut(s)	719, 919, 1239
AluBI	AGCT	6 cut(s)	7, 188, 274, 311, 689, 1198
AluI	AGCT	6 cut(s)	7, 188, 274, 311, 689, 1198
Alw21I	GWGCWC	3 cut(s)	616, 1239, 1281
Alw26I	GTCTC	3 cut(s)	82, 185, 857
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	5 cut(s)	251, 672, 685, 911, 1043
Ama87I	CYCGRG	2 cut(s)	357, 541
Aor51HI	AGCGCT	1 cut(s)	126
AoxI	GGCC	2 cut(s)	517, 964
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	4 cut(s)	127, 164, 836, 1226
ApoI	RAATTY	4 cut(s)	224, 783, 866, 1026
AseI	ATTAAT	2 cut(s)	414, 1092
AspLEI	GCGC	2 cut(s)	127, 1259
AsuHPI	GGTGA	4 cut(s)	61, 97, 208, 901
AvaI	CYCGRG	2 cut(s)	357, 541
BaeGI	GKGCMC	2 cut(s)	616, 1075
BamHI	GGATCC	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	1072
Bbv12I	GWGCWC	3 cut(s)	616, 1239, 1281
BbvI	GCAGC	4 cut(s)	114, 151, 823, 1213
BccI	CCATC	3 cut(s)	381, 575, 997
BceAI	ACGGC	3 cut(s)	129, 504, 1189
BcgI	CGANNNNNNTGC	2 cut(s)	1268, 1302
BciT130I	CCWGG	3 cut(s)	721, 921, 1241
BclI	TGATCA	2 cut(s)	634, 735
BcoDI	GTCTC	3 cut(s)	82, 185, 857
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	5 cut(s)	195, 231, 815, 939, 1101
BfmI	CTRYAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	5 cut(s)	128, 165, 837, 1098, 1227
BlsI	GCNGC	5 cut(s)	129, 166, 838, 1099, 1228
BmcAI	AGTACT	2 cut(s)	426, 1087
Bme1390I	CCNGG	3 cut(s)	721, 921, 1241
BmeT110I	CYCGRG	2 cut(s)	357, 541
BmiI	GGNNCC	2 cut(s)	679, 1074
BmrFI	CCNGG	3 cut(s)	721, 921, 1241
BmsI	GCATC	2 cut(s)	580, 1118
BpuEI	CTTGAG	2 cut(s)	839, 1295
BsaBI	GATNNNNATC	1 cut(s)	1108
BsaI	GGTCTC	1 cut(s)	857
BsaJI	CCNNGG	1 cut(s)	1291
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	3 cut(s)	980, 1003, 1292
Bse1I	ACTGG	1 cut(s)	853
Bse8I	GATNNNNATC	1 cut(s)	1108
BseBI	CCWGG	3 cut(s)	721, 921, 1241
BseDI	CCNNGG	1 cut(s)	1291
BseGI	GGATG	1 cut(s)	392
BseJI	GATNNNNATC	1 cut(s)	1108
BseLI	CCNNNNNNNGG	3 cut(s)	980, 1003, 1292
BseMII	CTCAG	3 cut(s)	180, 903, 963
BseNI	ACTGG	1 cut(s)	853
BseRI	GAGGAG	2 cut(s)	963, 1141
BseSI	GKGCMC	2 cut(s)	616, 1075
BseXI	GCAGC	4 cut(s)	114, 151, 823, 1213
BshFI	GGCC	2 cut(s)	519, 966
BshNI	GGYRCC	1 cut(s)	1072
BsiHKAI	GWGCWC	3 cut(s)	616, 1239, 1281
BsiHKCI	CYCGRG	2 cut(s)	357, 541
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	3 cut(s)	980, 1003, 1292
BsmAI	GTCTC	3 cut(s)	82, 185, 857
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	2 cut(s)	519, 966
Bso31I	GGTCTC	1 cut(s)	857
BsoBI	CYCGRG	2 cut(s)	357, 541
Bsp1286I	GDGCHC	4 cut(s)	616, 1075, 1239, 1281
Bsp1407I	TGTACA	1 cut(s)	653
BspACI	CCGC	6 cut(s)	13, 210, 334, 436, 681, 1098
BspANI	GGCC	2 cut(s)	519, 966
BspCNI	CTCAG	3 cut(s)	181, 902, 962
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	2 cut(s)	679, 1074
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	5 cut(s)	251, 672, 685, 911, 1043
BspT107I	GGYRCC	1 cut(s)	1072
BspTNI	GGTCTC	1 cut(s)	857
BsrGI	TGTACA	1 cut(s)	653
BsrI	ACTGG	1 cut(s)	853
BssECI	CCNNGG	1 cut(s)	1291
Bst2UI	CCWGG	3 cut(s)	721, 921, 1241
Bst4CI	ACNGT	6 cut(s)	39, 913, 1058, 1283, 1295, 1309
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstAUI	TGTACA	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	1141
BstDEI	CTNAG	3 cut(s)	189, 889, 949
BstDSI	CCRYGG	1 cut(s)	1291
BstF5I	GGATG	1 cut(s)	392
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	2 cut(s)	127, 1259
BstMAI	GTCTC	3 cut(s)	82, 185, 857
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 516, 1106
BstNI	CCWGG	3 cut(s)	721, 921, 1241
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	3 cut(s)	719, 919, 1239
BstSFI	CTRYAG	1 cut(s)	137
BstSLI	GKGCMC	2 cut(s)	616, 1075
BstV1I	GCAGC	4 cut(s)	114, 151, 823, 1213
BstX2I	RGATCY	3 cut(s)	256, 677, 916
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	3 cut(s)	256, 677, 916
BsuRI	GGCC	2 cut(s)	519, 966
BtgI	CCRYGG	1 cut(s)	1291
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	392
BtsI	GCAGTG	1 cut(s)	1154
BtsIMutI	CAGTG	2 cut(s)	1154, 1305
Cac8I	GCNNGC	1 cut(s)	1141
CciI	TCATGA	1 cut(s)	754
CfoI	GCGC	2 cut(s)	127, 1259
Csp6I	GTAC	6 cut(s)	342, 425, 479, 654, 1086, 1267
CviAII	CATG	8 cut(s)	220, 402, 511, 638, 755, 800, 811, 980
CviQI	GTAC	6 cut(s)	342, 425, 479, 654, 1086, 1267
DdeI	CTNAG	3 cut(s)	189, 889, 949
DraI	TTTAAA	1 cut(s)	555
DraIII	CACNNNGTG	1 cut(s)	1311
EaeI	YGGCCR	1 cut(s)	517
Eco31I	GGTCTC	1 cut(s)	857
Eco47III	AGCGCT	1 cut(s)	126
Eco88I	CYCGRG	2 cut(s)	357, 541
EcoRII	CCWGG	3 cut(s)	719, 919, 1239
EcoT22I	ATGCAT	1 cut(s)	403
FaeI	CATG	8 cut(s)	223, 405, 514, 641, 758, 803, 814, 983
FalI	AAGNNNNNCTT	2 cut(s)	716, 748
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	8 cut(s)	219, 401, 510, 637, 754, 799, 810, 979
FauNDI	CATATG	1 cut(s)	499
FbaI	TGATCA	2 cut(s)	634, 735
Fnu4HI	GCNGC	5 cut(s)	128, 165, 837, 1098, 1227
FokI	GGATG	1 cut(s)	399
Fsp4HI	GCNGC	5 cut(s)	128, 165, 837, 1098, 1227
FspBI	CTAG	5 cut(s)	195, 231, 815, 939, 1101
GlaI	GCGC	2 cut(s)	126, 1258
GluI	GCNGC	5 cut(s)	128, 165, 837, 1098, 1227
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	519, 966
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	2 cut(s)	127, 1259
Hin1II	CATG	8 cut(s)	223, 405, 514, 641, 758, 803, 814, 983
Hin6I	GCGC	2 cut(s)	125, 1257
HinP1I	GCGC	2 cut(s)	125, 1257
HindIII	AAGCTT	2 cut(s)	309, 1196
HinfI	GANTC	7 cut(s)	75, 213, 371, 716, 775, 887, 953
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	4 cut(s)	61, 97, 208, 901
Hpy166II	GTNNAC	2 cut(s)	182, 614
Hpy188I	TCNGA	6 cut(s)	82, 536, 624, 952, 1048, 1114
Hpy188III	TCNNGA	9 cut(s)	151, 359, 692, 733, 755, 779, 863, 957, 1274
Hpy8I	GTNNAC	2 cut(s)	182, 614
HpyAV	CCTTC	3 cut(s)	272, 718, 978
HpyCH4III	ACNGT	6 cut(s)	39, 913, 1058, 1283, 1295, 1309
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 516, 1106
HpyF3I	CTNAG	3 cut(s)	189, 889, 949
Hsp92II	CATG	8 cut(s)	223, 405, 514, 641, 758, 803, 814, 983
HspAI	GCGC	2 cut(s)	125, 1257
Ksp22I	TGATCA	2 cut(s)	634, 735
LmnI	GCTCC	1 cut(s)	1136
Lsp1109I	GCAGC	4 cut(s)	114, 151, 823, 1213
LweI	GCATC	2 cut(s)	580, 1118
MaeI	CTAG	5 cut(s)	195, 231, 815, 939, 1101
MaeIII	GTNAC	3 cut(s)	214, 233, 1147
MflI	RGATCY	3 cut(s)	256, 677, 916
MhlI	GDGCHC	4 cut(s)	616, 1075, 1239, 1281
MluCI	AATT	7 cut(s)	224, 618, 750, 783, 866, 1026, 1214
MlyI	GAGTC	4 cut(s)	84, 222, 725, 881
Mph1103I	ATGCAT	1 cut(s)	403
MseI	TTAA	5 cut(s)	297, 414, 554, 669, 1092
MspA1I	CMGCKG	1 cut(s)	438
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	3 cut(s)	721, 921, 1241
MvaI	CCWGG	3 cut(s)	721, 921, 1241
MwoI	GCNNNNNNNGC	3 cut(s)	136, 516, 1106
NdeI	CATATG	1 cut(s)	499
NlaIII	CATG	8 cut(s)	223, 405, 514, 641, 758, 803, 814, 983
NlaIV	GGNNCC	2 cut(s)	679, 1074
NmuCI	GTSAC	2 cut(s)	214, 233
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	1 cut(s)	514
PagI	TCATGA	1 cut(s)	754
PfeI	GAWTC	3 cut(s)	371, 775, 953
PflMI	CCANNNNNTGG	1 cut(s)	1003
PfoI	TCCNGGA	2 cut(s)	719, 919
PkrI	GCNGC	5 cut(s)	129, 166, 838, 1099, 1228
PleI	GAGTC	4 cut(s)	83, 221, 724, 881
PpsI	GAGTC	4 cut(s)	83, 221, 724, 881
PshBI	ATTAAT	2 cut(s)	414, 1092
Psp6I	CCWGG	3 cut(s)	719, 919, 1239
PspGI	CCWGG	3 cut(s)	719, 919, 1239
PspN4I	GGNNCC	2 cut(s)	679, 1074
PstI	CTGCAG	1 cut(s)	141
PsuI	RGATCY	3 cut(s)	256, 677, 916
RsaI	GTAC	6 cut(s)	343, 426, 480, 655, 1087, 1268
RsaNI	GTAC	6 cut(s)	342, 425, 479, 654, 1086, 1267
SaqAI	TTAA	5 cut(s)	297, 414, 554, 669, 1092
SatI	GCNGC	5 cut(s)	128, 165, 837, 1098, 1227
ScaI	AGTACT	2 cut(s)	426, 1087
SchI	GAGTC	4 cut(s)	84, 222, 725, 881
ScrFI	CCNGG	3 cut(s)	721, 921, 1241
SduI	GDGCHC	4 cut(s)	616, 1075, 1239, 1281
SfaNI	GCATC	2 cut(s)	580, 1118
SfcI	CTRYAG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	854, 1274
SmoI	CTYRAG	2 cut(s)	854, 1274
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	7 cut(s)	224, 618, 750, 783, 866, 1026, 1214
SsiI	CCGC	6 cut(s)	13, 210, 334, 436, 681, 1098
SspMI	CTAG	5 cut(s)	195, 231, 815, 939, 1101
StyD4I	CCNGG	3 cut(s)	719, 919, 1239
TaaI	ACNGT	6 cut(s)	39, 913, 1058, 1283, 1295, 1309
TaqI	TCGA	3 cut(s)	958, 1042, 1233
TasI	AATT	7 cut(s)	224, 618, 750, 783, 866, 1026, 1214
TatI	WGTACW	3 cut(s)	424, 653, 1085
TauI	GCSGC	1 cut(s)	1100
TfiI	GAWTC	3 cut(s)	371, 775, 953
Tru1I	TTAA	5 cut(s)	297, 414, 554, 669, 1092
Tru9I	TTAA	5 cut(s)	297, 414, 554, 669, 1092
TscAI	CASTG	2 cut(s)	1161, 1312
TseFI	GTSAC	2 cut(s)	214, 233
TseI	GCWGC	4 cut(s)	127, 164, 836, 1226
Tsp45I	GTSAC	2 cut(s)	214, 233
TspDTI	ATGAA	7 cut(s)	17, 236, 355, 743, 779, 1019, 1158
TspRI	CASTG	2 cut(s)	1161, 1312
Van91I	CCANNNNNTGG	1 cut(s)	1003
VneI	GTGCAC	1 cut(s)	612
VspI	ATTAAT	2 cut(s)	414, 1092
XapI	RAATTY	4 cut(s)	224, 783, 866, 1026
XceI	RCATGY	1 cut(s)	514
XspI	CTAG	5 cut(s)	195, 231, 815, 939, 1101
ZrmI	AGTACT	2 cut(s)	426, 1087
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.