FvH4_5g09130

Glycosyltransferase family 29 (sialyltransferase)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
5263243 .. 5267911
4669 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09130.t2

Sequence Viewer

Length: 1314 bp
ATGAGGCTACTGCGTTTAGCTTTCGTCGTCGCTTTACTGTTTGGATTGGTCGCCATCCTCATCTACATCACCGGCGTCTCCGATCTCTACGAGTTGAATCGGCTCACCGATGAGGATTTGGAAGCGCTGCAAACTCTACAGGATCGTTTTCAGAAATGTGTGGCTGCGAATGGATTAGGATTACAAGTCGAGAGTAGTAAAGATTCGTGCCAAGTCACGATGAAATTTCCTAGGGATACCATTCCTAAATGGAAAGATCCCAAAACCGATGAGCTTGAAGGTTTATCGTATGATTTTAATCTGTGCGAAGCTTTGGTTACTTGGGAACAGGTGCGGAATAGTACCACAATACTCACCCGGGAGTTCATTGATGCTTTACCAAATGGATGGGAGGATTATGCATGGCGTAGGATTAATAAAGGAATACAGCTTGACCGCTGTAAGAATAAAACTTTGTGTGTGGAGAAACTTTCTTTGGTACTCCCTGAAACACCACCATATGTTCCTCACATGTTTGGCCGTTGTGCTGTTATCGGAAACTCGGGTGATCTTCTGAAAACAAAGTTTGGGAGGGAGATAGATGGTTATGATGCAGTTGTTAGAGAAAATGGTGCACCAATTGAGAACTATGCTGATCATGTGGGCAAGAAATGTACTTTTCGGCTTCTTAATAGGGGATCCGCTAAAGCTCTTGATAAAGTTGTGGAGTTAGATGAGTCCAGGAAGGAAGTCTTGATTATCAAAACAACAATTCATGACACTATGAACAAGATGATTAAGGAAATTCCAATAAAAAATCACGTGTATCTCATGCTAGGTACTTCATTTGGTTCTGCAGCAAAAGGAACTGGTTTGAAGGCTCTTGAATTTGCCCTCTCTATATGTGACTCAGTAGATATGTATGGCTTCACTGTAGATCCTGGATATAAAGAATGGACTAGATACTTCTCAGAATCTCGACAAGGCCATACTCCTCTGCATGGCAGGGCATACTACCAGATGATGGAGTGTTTGGGGCTTATCAAAATTCATTCGCCTATTCGATCTGATCCAAACCGTGTTGTGCATTACGTACCAGACCGTAGTACTATAAATGCCGCTAGAATTGCATCAGAGAAATTGATGAGGAGGATTGGAGCAGGCTATGTAACTCCACTACGTATGTGTTCAATTGTAAAGAAGCAAGTCAAGCTAAAGCTTACATCATTCCTCAGACTGAGGAAGGCTGCTATCGAGCACCAGAAATATGTGAAAAGTGCAACCCTGTACCCTCTAGAGCATAGTCCTCGTCATGGTATGTTGTGCACTGTGTGA

Protein Analysis

438

Amino Acids

49.6

Weight (kDa)

9.06

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_29 PF00777 161 - 266 1.6e-19 Glycosyltransferase family 29 (sialyltransferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1003
AciI CCGC 4 cut(s) 334, 436, 681, 1098
AclWI GGATC 6 cut(s) 150, 251, 672, 685, 911, 1043
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 4 cut(s) 224, 783, 866, 1026
AcvI CACGTG 1 cut(s) 802
AcyI GRCGYC 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 1311
AfaI GTAC 7 cut(s) 343, 480, 655, 820, 1074, 1087, 1268
AfeI AGCGCT 1 cut(s) 126
AfiI CCNNNNNNNGG 3 cut(s) 980, 1003, 1292
AflIII ACRYGT 2 cut(s) 510, 801
AgsI TTSAA 5 cut(s) 97, 278, 856, 866, 1170
AjnI CCWGG 2 cut(s) 719, 919
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 7 cut(s) 20, 274, 311, 430, 689, 1192, 1198
AluI AGCT 7 cut(s) 20, 274, 311, 430, 689, 1192, 1198
Alw21I GWGCWC 3 cut(s) 616, 1239, 1307
Alw26I GTCTC 1 cut(s) 82
Alw44I GTGCAC 2 cut(s) 612, 1303
AlwI GGATC 6 cut(s) 150, 251, 672, 685, 911, 1043
Ama87I CYCGRG 2 cut(s) 357, 541
Aor51HI AGCGCT 1 cut(s) 126
AoxI GGCC 2 cut(s) 517, 964
ApaLI GTGCAC 2 cut(s) 612, 1303
ApeKI GCWGC 4 cut(s) 127, 164, 836, 1226
ApoI RAATTY 4 cut(s) 224, 783, 866, 1026
AseI ATTAAT 1 cut(s) 414
AspA2I CCTAGG 1 cut(s) 230
AspLEI GCGC 1 cut(s) 127
AsuC2I CCSGG 2 cut(s) 358, 359
AsuHPI GGTGA 4 cut(s) 61, 97, 346, 557
AvaI CYCGRG 2 cut(s) 357, 541
AvrII CCTAGG 1 cut(s) 230
BaeGI GKGCMC 2 cut(s) 616, 1307
BamHI GGATCC 1 cut(s) 677
BbrPI CACGTG 1 cut(s) 802
Bbv12I GWGCWC 3 cut(s) 616, 1239, 1307
BbvI GCAGC 4 cut(s) 114, 151, 848, 1213
BccI CCATC 4 cut(s) 62, 381, 575, 997
BceAI ACGGC 1 cut(s) 504
BcgI CGANNNNNNTGC 2 cut(s) 1268, 1302
BciT130I CCWGG 2 cut(s) 721, 921
BciVI GTATCC 1 cut(s) 229
BclI TGATCA 1 cut(s) 634
BcnI CCSGG 2 cut(s) 358, 359
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 5 cut(s) 231, 815, 939, 1101, 1274
BfmI CTRYAG 3 cut(s) 137, 834, 912
BfoI RGCGCY 1 cut(s) 128
BfuI GTATCC 1 cut(s) 229
BisI GCNGC 5 cut(s) 128, 165, 837, 1098, 1227
BlnI CCTAGG 1 cut(s) 230
BlsI GCNGC 5 cut(s) 129, 166, 838, 1099, 1228
BmcAI AGTACT 1 cut(s) 1087
Bme1390I CCNGG 4 cut(s) 358, 359, 721, 921
BmeT110I CYCGRG 2 cut(s) 357, 541
BmiI GGNNCC 1 cut(s) 679
BmrFI CCNGG 4 cut(s) 358, 359, 721, 921
BmsI GCATC 3 cut(s) 361, 580, 1118
BpuMI CCSGG 2 cut(s) 358, 359
BsaAI YACGTR 3 cut(s) 802, 1072, 1160
BsaBI GATNNNNATC 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 230, 357
Bsc4I CCNNNNNNNGG 3 cut(s) 980, 1003, 1292
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 853
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 2 cut(s) 721, 921
BseDI CCNNGG 2 cut(s) 230, 357
BseGI GGATG 2 cut(s) 54, 392
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 3 cut(s) 980, 1003, 1292
BseMII CTCAG 4 cut(s) 903, 963, 1208, 1225
BseNI ACTGG 1 cut(s) 853
BseRI GAGGAG 2 cut(s) 963, 1141
BseSI GKGCMC 2 cut(s) 616, 1307
BseXI GCAGC 4 cut(s) 114, 151, 848, 1213
BshFI GGCC 2 cut(s) 519, 966
BsiHKAI GWGCWC 3 cut(s) 616, 1239, 1307
BsiHKCI CYCGRG 2 cut(s) 357, 541
BsiSI CCGG 2 cut(s) 72, 358
BslI CCNNNNNNNGG 3 cut(s) 980, 1003, 1292
BsmAI GTCTC 1 cut(s) 82
BsmBI CGTCTC 1 cut(s) 82
BsnI GGCC 2 cut(s) 519, 966
BsoBI CYCGRG 2 cut(s) 357, 541
Bsp1286I GDGCHC 3 cut(s) 616, 1239, 1307
Bsp143I GATC 9 cut(s) 82, 142, 256, 547, 634, 677, 916, 1043, 1048
BspACI CCGC 4 cut(s) 334, 436, 681, 1098
BspANI GGCC 2 cut(s) 519, 966
BspCNI CTCAG 4 cut(s) 902, 962, 1209, 1224
BspHI TCATGA 1 cut(s) 754
BspLI GGNNCC 1 cut(s) 679
BspMAI CTGCAG 1 cut(s) 838
BspPI GGATC 6 cut(s) 150, 251, 672, 685, 911, 1043
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 853
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 230, 357
BssMI GATC 9 cut(s) 82, 142, 256, 547, 634, 677, 916, 1043, 1048
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 230
Bst2UI CCWGG 2 cut(s) 721, 921
Bst4CI ACNGT 5 cut(s) 39, 913, 1058, 1082, 1309
BstACI GRCGYC 1 cut(s) 75
BstBAI YACGTR 3 cut(s) 802, 1072, 1160
BstC8I GCNNGC 1 cut(s) 1141
BstDEI CTNAG 4 cut(s) 889, 949, 1211, 1217
BstF5I GGATG 2 cut(s) 54, 392
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 9 cut(s) 85, 145, 259, 550, 637, 680, 919, 1046, 1051
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 9 cut(s) 82, 142, 256, 547, 634, 677, 916, 1043, 1048
BstMWI GCNNNNNNNGC 2 cut(s) 1106, 1189
BstNI CCWGG 2 cut(s) 721, 921
BstNSI RCATGY 1 cut(s) 514
BstSCI CCNGG 4 cut(s) 356, 357, 719, 919
BstSFI CTRYAG 3 cut(s) 137, 834, 912
BstSLI GKGCMC 2 cut(s) 616, 1307
BstSNI TACGTA 2 cut(s) 1072, 1160
BstV1I GCAGC 4 cut(s) 114, 151, 848, 1213
BstX2I RGATCY 3 cut(s) 256, 677, 916
BstXI CCANNNNNNTGG 1 cut(s) 387
BstYI RGATCY 3 cut(s) 256, 677, 916
BsuI GTATCC 1 cut(s) 229
BsuRI GGCC 2 cut(s) 519, 966
BtsCI GGATG 2 cut(s) 54, 392
BtsIMutI CAGTG 2 cut(s) 909, 1305
Cac8I GCNNGC 1 cut(s) 1141
CciI TCATGA 1 cut(s) 754
CfoI GCGC 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 71
Cfr9I CCCGGG 1 cut(s) 357
CseI GACGC 1 cut(s) 64
Csp6I GTAC 7 cut(s) 342, 479, 654, 819, 1073, 1086, 1267
CviAII CATG 7 cut(s) 402, 511, 638, 755, 811, 980, 1292
CviQI GTAC 7 cut(s) 342, 479, 654, 819, 1073, 1086, 1267
DdeI CTNAG 4 cut(s) 889, 949, 1211, 1217
DpnI GATC 9 cut(s) 84, 144, 258, 549, 636, 679, 918, 1045, 1050
DpnII GATC 9 cut(s) 82, 142, 256, 547, 634, 677, 916, 1043, 1048
DraIII CACNNNGTG 1 cut(s) 1311
EaeI YGGCCR 1 cut(s) 517
Eco105I TACGTA 2 cut(s) 1072, 1160
Eco130I CCWWGG 1 cut(s) 230
Eco47III AGCGCT 1 cut(s) 126
Eco72I CACGTG 1 cut(s) 802
Eco88I CYCGRG 2 cut(s) 357, 541
EcoRII CCWGG 2 cut(s) 719, 919
EcoT14I CCWWGG 1 cut(s) 230
EcoT22I ATGCAT 1 cut(s) 403
ErhI CCWWGG 1 cut(s) 230
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 7 cut(s) 405, 514, 641, 758, 814, 983, 1295
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FatI CATG 7 cut(s) 401, 510, 637, 754, 810, 979, 1291
FauNDI CATATG 1 cut(s) 499
FbaI TGATCA 1 cut(s) 634
Fnu4HI GCNGC 5 cut(s) 128, 165, 837, 1098, 1227
FokI GGATG 2 cut(s) 41, 399
Fsp4HI GCNGC 5 cut(s) 128, 165, 837, 1098, 1227
FspBI CTAG 5 cut(s) 231, 815, 939, 1101, 1274
GlaI GCGC 1 cut(s) 126
GluI GCNGC 5 cut(s) 128, 165, 837, 1098, 1227
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 2 cut(s) 519, 966
HapII CCGG 2 cut(s) 72, 358
HgaI GACGC 1 cut(s) 64
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 7 cut(s) 405, 514, 641, 758, 814, 983, 1295
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HindIII AAGCTT 2 cut(s) 309, 1196
HinfI GANTC 5 cut(s) 97, 203, 716, 887, 953
HpaII CCGG 2 cut(s) 72, 358
HphI GGTGA 4 cut(s) 61, 97, 346, 557
Hpy166II GTNNAC 2 cut(s) 614, 1305
Hpy188I TCNGA 8 cut(s) 82, 153, 536, 555, 952, 1048, 1114, 1214
Hpy188III TCNNGA 8 cut(s) 190, 217, 692, 733, 755, 863, 957, 1274
Hpy8I GTNNAC 2 cut(s) 614, 1305
Hpy99I CGWCG 2 cut(s) 29, 32
HpyAV CCTTC 4 cut(s) 272, 718, 850, 1216
HpyCH4III ACNGT 5 cut(s) 39, 913, 1058, 1082, 1309
HpyCH4IV ACGT 3 cut(s) 801, 1071, 1159
HpyF10VI GCNNNNNNNGC 2 cut(s) 1106, 1189
HpyF3I CTNAG 4 cut(s) 889, 949, 1211, 1217
HpySE526I ACGT 3 cut(s) 801, 1071, 1159
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 7 cut(s) 405, 514, 641, 758, 814, 983, 1295
HspAI GCGC 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 9 cut(s) 82, 142, 256, 547, 634, 677, 916, 1043, 1048
LmnI GCTCC 1 cut(s) 1136
Lsp1109I GCAGC 4 cut(s) 114, 151, 848, 1213
LweI GCATC 3 cut(s) 361, 580, 1118
MaeI CTAG 5 cut(s) 231, 815, 939, 1101, 1274
MaeII ACGT 3 cut(s) 801, 1071, 1159
MaeIII GTNAC 4 cut(s) 214, 316, 884, 1147
MalI GATC 9 cut(s) 84, 144, 258, 549, 636, 679, 918, 1045, 1050
MboI GATC 9 cut(s) 82, 142, 256, 547, 634, 677, 916, 1043, 1048
MboII GAAGA 1 cut(s) 542
MfeI CAATTG 2 cut(s) 618, 1170
MflI RGATCY 3 cut(s) 256, 677, 916
MhlI GDGCHC 3 cut(s) 616, 1239, 1307
MluCI AATT 9 cut(s) 224, 618, 750, 783, 866, 1026, 1104, 1118, 1170
MlyI GAGTC 2 cut(s) 725, 881
Mph1103I ATGCAT 1 cut(s) 403
MseI TTAA 4 cut(s) 297, 414, 669, 777
MspA1I CMGCKG 1 cut(s) 438
MspI CCGG 2 cut(s) 72, 358
MspR9I CCNGG 4 cut(s) 358, 359, 721, 921
MunI CAATTG 2 cut(s) 618, 1170
MvaI CCWGG 2 cut(s) 721, 921
MwoI GCNNNNNNNGC 2 cut(s) 1106, 1189
NciI CCSGG 2 cut(s) 358, 359
NdeI CATATG 1 cut(s) 499
NdeII GATC 9 cut(s) 82, 142, 256, 547, 634, 677, 916, 1043, 1048
NlaIII CATG 7 cut(s) 405, 514, 641, 758, 814, 983, 1295
NlaIV GGNNCC 1 cut(s) 679
NmuCI GTSAC 2 cut(s) 214, 884
NsiI ATGCAT 1 cut(s) 403
NspI RCATGY 1 cut(s) 514
PagI TCATGA 1 cut(s) 754
PciI ACATGT 1 cut(s) 510
PfeI GAWTC 3 cut(s) 97, 203, 953
PflMI CCANNNNNTGG 1 cut(s) 1003
PfoI TCCNGGA 2 cut(s) 719, 919
PkrI GCNGC 5 cut(s) 129, 166, 838, 1099, 1228
PleI GAGTC 2 cut(s) 724, 881
PmaCI CACGTG 1 cut(s) 802
PmlI CACGTG 1 cut(s) 802
PpsI GAGTC 2 cut(s) 724, 881
Ppu21I YACGTR 3 cut(s) 802, 1072, 1160
PscI ACATGT 1 cut(s) 510
PshBI ATTAAT 1 cut(s) 414
Psp6I CCWGG 2 cut(s) 719, 919
PspCI CACGTG 1 cut(s) 802
PspGI CCWGG 2 cut(s) 719, 919
PspN4I GGNNCC 1 cut(s) 679
PstI CTGCAG 1 cut(s) 838
PsuI RGATCY 3 cut(s) 256, 677, 916
RsaI GTAC 7 cut(s) 343, 480, 655, 820, 1074, 1087, 1268
RsaNI GTAC 7 cut(s) 342, 479, 654, 819, 1073, 1086, 1267
SaqAI TTAA 4 cut(s) 297, 414, 669, 777
SatI GCNGC 5 cut(s) 128, 165, 837, 1098, 1227
Sau3AI GATC 9 cut(s) 82, 142, 256, 547, 634, 677, 916, 1043, 1048
ScaI AGTACT 1 cut(s) 1087
SchI GAGTC 2 cut(s) 725, 881
ScrFI CCNGG 4 cut(s) 358, 359, 721, 921
SduI GDGCHC 3 cut(s) 616, 1239, 1307
SfaNI GCATC 3 cut(s) 361, 580, 1118
SfcI CTRYAG 3 cut(s) 137, 834, 912
SgrAI CRCCGGYG 1 cut(s) 71
SmaI CCCGGG 1 cut(s) 359
SnaBI TACGTA 2 cut(s) 1072, 1160
Sse9I AATT 9 cut(s) 224, 618, 750, 783, 866, 1026, 1104, 1118, 1170
SsiI CCGC 4 cut(s) 334, 436, 681, 1098
SspMI CTAG 5 cut(s) 231, 815, 939, 1101, 1274
StyD4I CCNGG 4 cut(s) 356, 357, 719, 919
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 5 cut(s) 39, 913, 1058, 1082, 1309
TaiI ACGT 3 cut(s) 804, 1074, 1162
TaqI TCGA 4 cut(s) 189, 958, 1042, 1233
TasI AATT 9 cut(s) 224, 618, 750, 783, 866, 1026, 1104, 1118, 1170
TatI WGTACW 2 cut(s) 653, 1085
TauI GCSGC 1 cut(s) 1100
TfiI GAWTC 3 cut(s) 97, 203, 953
Tru1I TTAA 4 cut(s) 297, 414, 669, 777
Tru9I TTAA 4 cut(s) 297, 414, 669, 777
TscAI CASTG 2 cut(s) 916, 1312
TseFI GTSAC 2 cut(s) 214, 884
TseI GCWGC 4 cut(s) 127, 164, 836, 1226
Tsp45I GTSAC 2 cut(s) 214, 884
TspDTI ATGAA 6 cut(s) 236, 355, 743, 779, 813, 1019
TspMI CCCGGG 1 cut(s) 357
TspRI CASTG 2 cut(s) 916, 1312
Van91I CCANNNNNTGG 1 cut(s) 1003
VneI GTGCAC 2 cut(s) 612, 1303
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 4 cut(s) 224, 783, 866, 1026
XbaI TCTAGA 1 cut(s) 1273
XceI RCATGY 1 cut(s) 514
XmaI CCCGGG 1 cut(s) 357
XmaJI CCTAGG 1 cut(s) 230
XspI CTAG 5 cut(s) 231, 815, 939, 1101, 1274
ZrmI AGTACT 1 cut(s) 1087
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.