Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Reverse (-)

59203767 .. 59208459

Gene Structure 4693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAGCTTGAAGGTTTATCGTATGAGTTTAATCTGTGTGAAGCTTTGGCTACTTGGGAACAGTGAGTTGATTGCTCAGGTGCGGAATAGTACCACCATTCTCACTCGGGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCATGGCGTAGGATTAATAAAGGAGTACTACTTGACCGCTGTAAGAATAAAAGTTTGTGTGTGGAGAAACTTTCTCTGGTACTCCCTTTCACACCACCATATGTTCCTCGCATGTTTGGCCGTTGTGCTGTTATCGGAAACTCGGGCGATCTTTTAAAAACAAAGTTTGGGAGAGAGATAGATGGCTATGATGCAGTTGTTAGAGAAAATGGTGCACCAATTCAGAACTATACTGATCATGTGGGCAAGAAATGTACGTTTCGGCTTCTTAATAGAGGATCCGCTAAAGCTCTTGATAAAGTTGTGGAGTTAGATGAGTCCAGGAAGGAGGTCTTGATCATCAAAACAACAATTCATGACACTATGAACAAGATGATTCGGGAAATTCCAATAAAAAATCATGTATATCTCATGCTAGGTGCTTCCTTTGGTTCTGCTGCAAAAGGAACTGGTCTCAAGGCTCTTGAATTTGCCCTTTCTATATGTGACTCAGTAGATATGTATGGCTTCACTGTAGATCCTGGATATAAAGAATGGACTAGATACTTCTCAGAATCTCGACAAGGCCATACTCCTCTGCATGGAAGGGCATACTACCAGATGATGGAGTGTTTGGGTCTTATCAAAATTCATTCGCCTGTTCGATCTGATCCAAACCGTGTTGTGCATTGGGCACCAGATCGTAGTACTATTAATGCCGCTAGATTTGCATCAGAGAAATGGTTGAGGAGGATTGGAGCAGGCTATGCAACTCCACTGCGTATGTGTTCATTTGTAAAGAAGCAAATCAAACTAAAGCTTACGCCGTTTCTCAAATTGAGAAAGGCTGCTATCGAGCACCAGGAATATGTGAAAAGCGCAACCCTGTACCCTCTTGAGCACAGTCCTCGTCACGGTATGCTTTGCACTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

353

Amino Acids

40.19

Weight (kDa)

9.63

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_29	PF00777	82 - 178	4.2e-19	Glycosyltransferase family 29 (sialyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	820
AccB7I	CCANNNNNTGG	1 cut(s)	751
AciI	CCGC	4 cut(s)	82, 184, 429, 846
AclWI	GGATC	4 cut(s)	420, 433, 659, 791
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	3 cut(s)	531, 614, 774
AdeI	CACNNNGTG	1 cut(s)	1059
AfaI	GTAC	6 cut(s)	91, 174, 228, 403, 835, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	728, 751, 1040
AgsI	TTSAA	2 cut(s)	10, 614
AjnI	CCWGG	3 cut(s)	467, 667, 987
AluBI	AGCT	4 cut(s)	6, 43, 437, 946
AluI	AGCT	4 cut(s)	6, 43, 437, 946
Alw21I	GWGCWC	3 cut(s)	364, 987, 1029
Alw26I	GTCTC	1 cut(s)	605
Alw44I	GTGCAC	1 cut(s)	360
AlwI	GGATC	4 cut(s)	420, 433, 659, 791
Ama87I	CYCGRG	2 cut(s)	105, 289
AoxI	GGCC	2 cut(s)	265, 712
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	2 cut(s)	584, 974
ApoI	RAATTY	3 cut(s)	531, 614, 774
AseI	ATTAAT	2 cut(s)	162, 840
AspLEI	GCGC	1 cut(s)	1007
AvaI	CYCGRG	2 cut(s)	105, 289
BaeGI	GKGCMC	2 cut(s)	364, 823
BamHI	GGATCC	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	820
Bbv12I	GWGCWC	3 cut(s)	364, 987, 1029
BbvI	GCAGC	2 cut(s)	571, 961
BccI	CCATC	3 cut(s)	129, 323, 745
BceAI	ACGGC	2 cut(s)	252, 937
BcgI	CGANNNNNNTGC	2 cut(s)	1016, 1050
BciT130I	CCWGG	3 cut(s)	469, 669, 989
BclI	TGATCA	2 cut(s)	382, 483
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	3 cut(s)	563, 687, 849
BfmI	CTRYAG	1 cut(s)	660
BisI	GCNGC	3 cut(s)	585, 846, 975
BlsI	GCNGC	3 cut(s)	586, 847, 976
BmcAI	AGTACT	2 cut(s)	174, 835
Bme1390I	CCNGG	3 cut(s)	469, 669, 989
BmeT110I	CYCGRG	2 cut(s)	105, 289
BmiI	GGNNCC	2 cut(s)	427, 822
BmrFI	CCNGG	3 cut(s)	469, 669, 989
BmsI	GCATC	2 cut(s)	328, 866
Bpu10I	CCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	587, 1043
BsaBI	GATNNNNATC	1 cut(s)	856
BsaI	GGTCTC	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	3 cut(s)	728, 751, 1040
Bse1I	ACTGG	1 cut(s)	601
Bse8I	GATNNNNATC	1 cut(s)	856
BseBI	CCWGG	3 cut(s)	469, 669, 989
BseGI	GGATG	1 cut(s)	140
BseJI	GATNNNNATC	1 cut(s)	856
BseLI	CCNNNNNNNGG	3 cut(s)	728, 751, 1040
BseMII	CTCAG	3 cut(s)	89, 651, 711
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	2 cut(s)	711, 889
BseSI	GKGCMC	2 cut(s)	364, 823
BseXI	GCAGC	2 cut(s)	571, 961
BshFI	GGCC	2 cut(s)	267, 714
BshNI	GGYRCC	1 cut(s)	820
BsiHKAI	GWGCWC	3 cut(s)	364, 987, 1029
BsiHKCI	CYCGRG	2 cut(s)	105, 289
BslI	CCNNNNNNNGG	3 cut(s)	728, 751, 1040
BsmAI	GTCTC	1 cut(s)	605
BsnI	GGCC	2 cut(s)	267, 714
Bso31I	GGTCTC	1 cut(s)	605
BsoBI	CYCGRG	2 cut(s)	105, 289
Bsp1286I	GDGCHC	4 cut(s)	364, 823, 987, 1029
Bsp143I	GATC	8 cut(s)	295, 382, 425, 483, 664, 791, 796, 826
BspACI	CCGC	4 cut(s)	82, 184, 429, 846
BspANI	GGCC	2 cut(s)	267, 714
BspCNI	CTCAG	3 cut(s)	88, 650, 710
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	2 cut(s)	427, 822
BspPI	GGATC	4 cut(s)	420, 433, 659, 791
BspT107I	GGYRCC	1 cut(s)	820
BspTNI	GGTCTC	1 cut(s)	605
BsrI	ACTGG	1 cut(s)	601
BssMI	GATC	8 cut(s)	295, 382, 425, 483, 664, 791, 796, 826
Bst2UI	CCWGG	3 cut(s)	469, 669, 989
Bst4CI	ACNGT	6 cut(s)	62, 661, 806, 1031, 1043, 1057
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstC8I	GCNNGC	1 cut(s)	889
BstDEI	CTNAG	3 cut(s)	75, 637, 697
BstF5I	GGATG	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	1007
BstKTI	GATC	8 cut(s)	298, 385, 428, 486, 667, 794, 799, 829
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	8 cut(s)	295, 382, 425, 483, 664, 791, 796, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	264, 854, 893
BstNI	CCWGG	3 cut(s)	469, 669, 989
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	3 cut(s)	467, 667, 987
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	2 cut(s)	364, 823
BstV1I	GCAGC	2 cut(s)	571, 961
BstX2I	RGATCY	2 cut(s)	425, 664
BstXI	CCANNNNNNTGG	1 cut(s)	135
BstYI	RGATCY	2 cut(s)	425, 664
BsuRI	GGCC	2 cut(s)	267, 714
BtsCI	GGATG	1 cut(s)	140
BtsI	GCAGTG	1 cut(s)	902
BtsIMutI	CAGTG	4 cut(s)	67, 657, 902, 1053
Cac8I	GCNNGC	1 cut(s)	889
CciI	TCATGA	1 cut(s)	502
CfoI	GCGC	1 cut(s)	1007
Csp6I	GTAC	6 cut(s)	90, 173, 227, 402, 834, 1015
CviAII	CATG	7 cut(s)	150, 259, 386, 503, 548, 559, 728
CviQI	GTAC	6 cut(s)	90, 173, 227, 402, 834, 1015
DdeI	CTNAG	3 cut(s)	75, 637, 697
DpnI	GATC	8 cut(s)	297, 384, 427, 485, 666, 793, 798, 828
DpnII	GATC	8 cut(s)	295, 382, 425, 483, 664, 791, 796, 826
DraI	TTTAAA	1 cut(s)	303
DraIII	CACNNNGTG	1 cut(s)	1059
EaeI	YGGCCR	1 cut(s)	265
Eco31I	GGTCTC	1 cut(s)	605
Eco88I	CYCGRG	2 cut(s)	105, 289
EcoRII	CCWGG	3 cut(s)	467, 667, 987
EcoT22I	ATGCAT	1 cut(s)	151
FaeI	CATG	7 cut(s)	153, 262, 389, 506, 551, 562, 731
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FatI	CATG	7 cut(s)	149, 258, 385, 502, 547, 558, 727
FauNDI	CATATG	1 cut(s)	247
FbaI	TGATCA	2 cut(s)	382, 483
Fnu4HI	GCNGC	3 cut(s)	585, 846, 975
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	3 cut(s)	585, 846, 975
FspBI	CTAG	3 cut(s)	563, 687, 849
GlaI	GCGC	1 cut(s)	1006
GluI	GCNGC	3 cut(s)	585, 846, 975
HaeIII	GGCC	2 cut(s)	267, 714
HhaI	GCGC	1 cut(s)	1007
Hin1II	CATG	7 cut(s)	153, 262, 389, 506, 551, 562, 731
Hin6I	GCGC	1 cut(s)	1005
HinP1I	GCGC	1 cut(s)	1005
HindIII	AAGCTT	2 cut(s)	41, 944
HinfI	GANTC	5 cut(s)	119, 464, 523, 635, 701
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	5 cut(s)	284, 372, 700, 796, 862
Hpy188III	TCNNGA	8 cut(s)	107, 440, 481, 503, 527, 611, 705, 1022
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	3 cut(s)	4, 466, 726
HpyCH4III	ACNGT	6 cut(s)	62, 661, 806, 1031, 1043, 1057
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	9 cut(s)	149, 341, 362, 587, 727, 814, 857, 896, 1053
HpyF10VI	GCNNNNNNNGC	3 cut(s)	264, 854, 893
HpyF3I	CTNAG	3 cut(s)	75, 637, 697
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	7 cut(s)	153, 262, 389, 506, 551, 562, 731
HspAI	GCGC	1 cut(s)	1005
Ksp22I	TGATCA	2 cut(s)	382, 483
Kzo9I	GATC	8 cut(s)	295, 382, 425, 483, 664, 791, 796, 826
LmnI	GCTCC	1 cut(s)	884
Lsp1109I	GCAGC	2 cut(s)	571, 961
LweI	GCATC	2 cut(s)	328, 866
MaeI	CTAG	3 cut(s)	563, 687, 849
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	2 cut(s)	632, 1037
MalI	GATC	8 cut(s)	297, 384, 427, 485, 666, 793, 798, 828
MboI	GATC	8 cut(s)	295, 382, 425, 483, 664, 791, 796, 826
MflI	RGATCY	2 cut(s)	425, 664
MhlI	GDGCHC	4 cut(s)	364, 823, 987, 1029
MluCI	AATT	6 cut(s)	366, 498, 531, 614, 774, 962
MlyI	GAGTC	2 cut(s)	473, 629
MnlI	CCTC	9 cut(s)	133, 264, 416, 469, 732, 867, 870, 1029, 1044
Mph1103I	ATGCAT	1 cut(s)	151
MseI	TTAA	5 cut(s)	29, 162, 302, 417, 840
MspA1I	CMGCKG	1 cut(s)	186
MspR9I	CCNGG	3 cut(s)	469, 669, 989
MvaI	CCWGG	3 cut(s)	469, 669, 989
MwoI	GCNNNNNNNGC	3 cut(s)	264, 854, 893
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	8 cut(s)	295, 382, 425, 483, 664, 791, 796, 826
NlaIII	CATG	7 cut(s)	153, 262, 389, 506, 551, 562, 731
NlaIV	GGNNCC	2 cut(s)	427, 822
NmuCI	GTSAC	2 cut(s)	632, 1037
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	1 cut(s)	262
PagI	TCATGA	1 cut(s)	502
PfeI	GAWTC	3 cut(s)	119, 523, 701
PflMI	CCANNNNNTGG	1 cut(s)	751
PfoI	TCCNGGA	2 cut(s)	467, 667
PkrI	GCNGC	3 cut(s)	586, 847, 976
PleI	GAGTC	2 cut(s)	472, 629
PpsI	GAGTC	2 cut(s)	472, 629
PshBI	ATTAAT	2 cut(s)	162, 840
Psp6I	CCWGG	3 cut(s)	467, 667, 987
PspGI	CCWGG	3 cut(s)	467, 667, 987
PspN4I	GGNNCC	2 cut(s)	427, 822
PsuI	RGATCY	2 cut(s)	425, 664
RsaI	GTAC	6 cut(s)	91, 174, 228, 403, 835, 1016
RsaNI	GTAC	6 cut(s)	90, 173, 227, 402, 834, 1015
SaqAI	TTAA	5 cut(s)	29, 162, 302, 417, 840
SatI	GCNGC	3 cut(s)	585, 846, 975
Sau3AI	GATC	8 cut(s)	295, 382, 425, 483, 664, 791, 796, 826
ScaI	AGTACT	2 cut(s)	174, 835
SchI	GAGTC	2 cut(s)	473, 629
ScrFI	CCNGG	3 cut(s)	469, 669, 989
SduI	GDGCHC	4 cut(s)	364, 823, 987, 1029
SetI	ASST	9 cut(s)	8, 15, 45, 81, 407, 439, 480, 568, 948
SfaNI	GCATC	2 cut(s)	328, 866
SfcI	CTRYAG	1 cut(s)	660
SmlI	CTYRAG	2 cut(s)	602, 1022
SmoI	CTYRAG	2 cut(s)	602, 1022
Sse9I	AATT	6 cut(s)	366, 498, 531, 614, 774, 962
SsiI	CCGC	4 cut(s)	82, 184, 429, 846
SspMI	CTAG	3 cut(s)	563, 687, 849
StyD4I	CCNGG	3 cut(s)	467, 667, 987
TaaI	ACNGT	6 cut(s)	62, 661, 806, 1031, 1043, 1057
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	3 cut(s)	706, 790, 981
TasI	AATT	6 cut(s)	366, 498, 531, 614, 774, 962
TatI	WGTACW	2 cut(s)	172, 833
TauI	GCSGC	1 cut(s)	848
TfiI	GAWTC	3 cut(s)	119, 523, 701
Tru1I	TTAA	5 cut(s)	29, 162, 302, 417, 840
Tru9I	TTAA	5 cut(s)	29, 162, 302, 417, 840
TscAI	CASTG	4 cut(s)	67, 664, 909, 1060
TseFI	GTSAC	2 cut(s)	632, 1037
TseI	GCWGC	2 cut(s)	584, 974
Tsp45I	GTSAC	2 cut(s)	632, 1037
TspDTI	ATGAA	5 cut(s)	103, 491, 527, 767, 906
TspRI	CASTG	4 cut(s)	67, 664, 909, 1060
Van91I	CCANNNNNTGG	1 cut(s)	751
VneI	GTGCAC	1 cut(s)	360
VspI	ATTAAT	2 cut(s)	162, 840
XapI	RAATTY	3 cut(s)	531, 614, 774
XceI	RCATGY	1 cut(s)	262
XspI	CTAG	3 cut(s)	563, 687, 849
ZrmI	AGTACT	2 cut(s)	174, 835
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.