Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Reverse (-)

61006158 .. 61009280

Gene Structure 3123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004636

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAAGCTGTTGCGGTTAGCGTTCGTCATCGCTCTACTATTTGGATTGGTCGCCATCCTCATCTACATCACGGGAGTCTCCGATCTCTATGAGATCAATCGGCTCACCGATGATGATTTGGAAGCGCTGCAAAATCTGCAAAGCCGTTTCCAGAAATGTGTGGCTGCGAATGGATTAGGTTTACAAGCTGAGACTAGTAAAGATTACTGCGGAGTCACCATGAAATTTCCTAGTGACACCATTCCTAAATGGAAAGATCCCAAAACCAATGAGCTTGAAGGTTTATCGTATGAGTTTAATCTATGTGAAGCTTTGGCTACTTGGGAACAGGTGCGGAATAGTACCACCATTCTCACCCGGGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCATGGCGTAGGATTAATAAAGGAGTACTACTTGACCGCTGTAAGAATAAAACTTTGTGTGTGGAGAAACTTTCTCTGGTACTCCCTTTCACACCACCATATGTTCCTCGCATGTTTGGCCGTTGTGCTGTTATCGGAAACTCGGGCGATCTTTTAAAAACAAAGTTTGGGAGAGAGATAGATGGTTATGATGCAGTCGTTAGAGAAAATGGTGCACCAATTCAGAACTATACTGATCATGTGGGCAAGAAATGCACGTTTCGGCTTCTTAATAGAGGATCCGCTAAAGCTCTTGATAAAGTTGTGGAGTTAGATGAGTCCAGGAAGGAAGTCTTGATCATCAAAACAACAATTCATGACACTATGAACAAGATGATTCGGGAAATTCCAATAAAAAATCATGTATATCTCATGCTAGGTGCTTCCTTTGGTTCTGCTGCAAAAGGAACTGGTCTCAAGGCTCTTGAATTTGCCCTCTCTATATGCGACTCAGTAGATATGTATGGCTTCACTGTAGATCCTGGATATAAAGAATGGACTAGATACTTCTCAGAATCTCGACAAGGCCATACCCCTCTGCATGGAAGGGCATACTACCAGATGATGGAGTGTTTGGGTGTAAGTTCTGAAATTTCCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

347

Amino Acids

39.03

Weight (kDa)

7.51

Isoelectric Point (pI)

28.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_29	PF00777	166 - 263	3.5e-19	Glycosyltransferase family 29 (sialyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1003
AciI	CCGC	5 cut(s)	13, 210, 334, 436, 681
AclWI	GGATC	4 cut(s)	251, 672, 685, 911
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	4 cut(s)	224, 783, 866, 1029
AfaI	GTAC	3 cut(s)	343, 426, 480
AfeI	AGCGCT	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	980, 1003
AgsI	TTSAA	2 cut(s)	278, 866
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	2 cut(s)	719, 919
AluBI	AGCT	5 cut(s)	7, 188, 274, 311, 689
AluI	AGCT	5 cut(s)	7, 188, 274, 311, 689
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	3 cut(s)	82, 185, 857
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	4 cut(s)	251, 672, 685, 911
Ama87I	CYCGRG	2 cut(s)	357, 541
Aor51HI	AGCGCT	1 cut(s)	126
AoxI	GGCC	2 cut(s)	517, 964
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	3 cut(s)	127, 164, 836
ApoI	RAATTY	4 cut(s)	224, 783, 866, 1029
AseI	ATTAAT	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	127
AsuC2I	CCSGG	2 cut(s)	358, 359
AsuHPI	GGTGA	3 cut(s)	97, 208, 346
AvaI	CYCGRG	2 cut(s)	357, 541
BaeGI	GKGCMC	1 cut(s)	616
BamHI	GGATCC	1 cut(s)	677
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	3 cut(s)	114, 151, 823
BccI	CCATC	4 cut(s)	62, 381, 575, 997
BceAI	ACGGC	2 cut(s)	129, 504
BciT130I	CCWGG	2 cut(s)	721, 921
BclI	TGATCA	2 cut(s)	634, 735
BcnI	CCSGG	2 cut(s)	358, 359
BcoDI	GTCTC	3 cut(s)	82, 185, 857
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	4 cut(s)	195, 231, 815, 939
BfmI	CTRYAG	1 cut(s)	912
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	3 cut(s)	128, 165, 837
BlsI	GCNGC	3 cut(s)	129, 166, 838
BmcAI	AGTACT	1 cut(s)	426
Bme1390I	CCNGG	4 cut(s)	358, 359, 721, 921
BmeT110I	CYCGRG	2 cut(s)	357, 541
BmiI	GGNNCC	1 cut(s)	679
BmrFI	CCNGG	4 cut(s)	358, 359, 721, 921
BmsI	GCATC	1 cut(s)	580
BpuEI	CTTGAG	1 cut(s)	839
BpuMI	CCSGG	2 cut(s)	358, 359
BsaI	GGTCTC	1 cut(s)	857
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	980, 1003
Bse1I	ACTGG	1 cut(s)	853
BseBI	CCWGG	2 cut(s)	721, 921
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	54, 392
BseLI	CCNNNNNNNGG	2 cut(s)	980, 1003
BseMII	CTCAG	3 cut(s)	180, 903, 963
BseNI	ACTGG	1 cut(s)	853
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	3 cut(s)	114, 151, 823
BshFI	GGCC	2 cut(s)	519, 966
BsiHKAI	GWGCWC	1 cut(s)	616
BsiHKCI	CYCGRG	2 cut(s)	357, 541
BsiSI	CCGG	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	980, 1003
BsmAI	GTCTC	3 cut(s)	82, 185, 857
BsnI	GGCC	2 cut(s)	519, 966
Bso31I	GGTCTC	1 cut(s)	857
BsoBI	CYCGRG	2 cut(s)	357, 541
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	8 cut(s)	82, 93, 256, 547, 634, 677, 735, 916
BspACI	CCGC	5 cut(s)	13, 210, 334, 436, 681
BspANI	GGCC	2 cut(s)	519, 966
BspCNI	CTCAG	3 cut(s)	181, 902, 962
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	1 cut(s)	679
BspPI	GGATC	4 cut(s)	251, 672, 685, 911
BspTNI	GGTCTC	1 cut(s)	857
BsrI	ACTGG	1 cut(s)	853
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	8 cut(s)	82, 93, 256, 547, 634, 677, 735, 916
Bst2UI	CCWGG	2 cut(s)	721, 921
Bst4CI	ACNGT	1 cut(s)	913
BstAPI	GCANNNNNTGC	2 cut(s)	136, 651
BstDEI	CTNAG	4 cut(s)	189, 889, 949, 1038
BstF5I	GGATG	2 cut(s)	54, 392
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	8 cut(s)	85, 96, 259, 550, 637, 680, 738, 919
BstMAI	GTCTC	3 cut(s)	82, 185, 857
BstMBI	GATC	8 cut(s)	82, 93, 256, 547, 634, 677, 735, 916
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 516, 651
BstNI	CCWGG	2 cut(s)	721, 921
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	4 cut(s)	356, 357, 719, 919
BstSFI	CTRYAG	1 cut(s)	912
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	3 cut(s)	114, 151, 823
BstX2I	RGATCY	3 cut(s)	256, 677, 916
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	3 cut(s)	256, 677, 916
BsuRI	GGCC	2 cut(s)	519, 966
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	54, 392
BtsIMutI	CAGTG	1 cut(s)	909
CciI	TCATGA	1 cut(s)	754
CfoI	GCGC	1 cut(s)	127
Cfr9I	CCCGGG	1 cut(s)	357
Csp6I	GTAC	3 cut(s)	342, 425, 479
CviAII	CATG	8 cut(s)	220, 402, 511, 638, 755, 800, 811, 980
CviQI	GTAC	3 cut(s)	342, 425, 479
DdeI	CTNAG	4 cut(s)	189, 889, 949, 1038
DpnI	GATC	8 cut(s)	84, 95, 258, 549, 636, 679, 737, 918
DpnII	GATC	8 cut(s)	82, 93, 256, 547, 634, 677, 735, 916
DraI	TTTAAA	1 cut(s)	555
EaeI	YGGCCR	1 cut(s)	517
Eco31I	GGTCTC	1 cut(s)	857
Eco47III	AGCGCT	1 cut(s)	126
Eco88I	CYCGRG	2 cut(s)	357, 541
EcoRII	CCWGG	2 cut(s)	719, 919
EcoT22I	ATGCAT	1 cut(s)	403
FaeI	CATG	8 cut(s)	223, 405, 514, 641, 758, 803, 814, 983
FalI	AAGNNNNNCTT	2 cut(s)	716, 748
FatI	CATG	8 cut(s)	219, 401, 510, 637, 754, 799, 810, 979
FauNDI	CATATG	1 cut(s)	499
FbaI	TGATCA	2 cut(s)	634, 735
Fnu4HI	GCNGC	3 cut(s)	128, 165, 837
FokI	GGATG	2 cut(s)	41, 399
Fsp4HI	GCNGC	3 cut(s)	128, 165, 837
FspBI	CTAG	4 cut(s)	195, 231, 815, 939
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	3 cut(s)	128, 165, 837
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	519, 966
HapII	CCGG	1 cut(s)	358
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	8 cut(s)	223, 405, 514, 641, 758, 803, 814, 983
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	7 cut(s)	75, 213, 371, 716, 775, 887, 953
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	3 cut(s)	97, 208, 346
Hpy166II	GTNNAC	2 cut(s)	182, 614
Hpy188I	TCNGA	5 cut(s)	82, 536, 624, 952, 1027
Hpy188III	TCNNGA	7 cut(s)	151, 692, 733, 755, 779, 863, 957
Hpy8I	GTNNAC	2 cut(s)	182, 614
HpyAV	CCTTC	3 cut(s)	272, 718, 978
HpyCH4III	ACNGT	1 cut(s)	913
HpyCH4IV	ACGT	1 cut(s)	656
HpyCH4V	TGCA	8 cut(s)	130, 139, 401, 593, 614, 654, 839, 979
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 516, 651
HpyF3I	CTNAG	4 cut(s)	189, 889, 949, 1038
HpySE526I	ACGT	1 cut(s)	656
Hsp92II	CATG	8 cut(s)	223, 405, 514, 641, 758, 803, 814, 983
HspAI	GCGC	1 cut(s)	125
Ksp22I	TGATCA	2 cut(s)	634, 735
Kzo9I	GATC	8 cut(s)	82, 93, 256, 547, 634, 677, 735, 916
Lsp1109I	GCAGC	3 cut(s)	114, 151, 823
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	4 cut(s)	195, 231, 815, 939
MaeII	ACGT	1 cut(s)	656
MaeIII	GTNAC	2 cut(s)	214, 233
MalI	GATC	8 cut(s)	84, 95, 258, 549, 636, 679, 737, 918
MboI	GATC	8 cut(s)	82, 93, 256, 547, 634, 677, 735, 916
MflI	RGATCY	3 cut(s)	256, 677, 916
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	6 cut(s)	224, 618, 750, 783, 866, 1029
MlyI	GAGTC	4 cut(s)	84, 222, 725, 881
MnlI	CCTC	6 cut(s)	68, 385, 516, 668, 884, 984
Mph1103I	ATGCAT	1 cut(s)	403
MseI	TTAA	4 cut(s)	297, 414, 554, 669
MspA1I	CMGCKG	1 cut(s)	438
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	4 cut(s)	358, 359, 721, 921
MvaI	CCWGG	2 cut(s)	721, 921
MwoI	GCNNNNNNNGC	3 cut(s)	136, 516, 651
NciI	CCSGG	2 cut(s)	358, 359
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	8 cut(s)	82, 93, 256, 547, 634, 677, 735, 916
NlaIII	CATG	8 cut(s)	223, 405, 514, 641, 758, 803, 814, 983
NlaIV	GGNNCC	1 cut(s)	679
NmuCI	GTSAC	2 cut(s)	214, 233
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	1 cut(s)	514
PagI	TCATGA	1 cut(s)	754
PfeI	GAWTC	3 cut(s)	371, 775, 953
PflMI	CCANNNNNTGG	1 cut(s)	1003
PfoI	TCCNGGA	2 cut(s)	719, 919
PkrI	GCNGC	3 cut(s)	129, 166, 838
PleI	GAGTC	4 cut(s)	83, 221, 724, 881
PpsI	GAGTC	4 cut(s)	83, 221, 724, 881
PshBI	ATTAAT	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	719, 919
PspGI	CCWGG	2 cut(s)	719, 919
PspN4I	GGNNCC	1 cut(s)	679
PsuI	RGATCY	3 cut(s)	256, 677, 916
RsaI	GTAC	3 cut(s)	343, 426, 480
RsaNI	GTAC	3 cut(s)	342, 425, 479
SaqAI	TTAA	4 cut(s)	297, 414, 554, 669
SatI	GCNGC	3 cut(s)	128, 165, 837
Sau3AI	GATC	8 cut(s)	82, 93, 256, 547, 634, 677, 735, 916
ScaI	AGTACT	1 cut(s)	426
SchI	GAGTC	4 cut(s)	84, 222, 725, 881
ScrFI	CCNGG	4 cut(s)	358, 359, 721, 921
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	1 cut(s)	912
SmaI	CCCGGG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	854
SmoI	CTYRAG	1 cut(s)	854
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	6 cut(s)	224, 618, 750, 783, 866, 1029
SsiI	CCGC	5 cut(s)	13, 210, 334, 436, 681
SspMI	CTAG	4 cut(s)	195, 231, 815, 939
StyD4I	CCNGG	4 cut(s)	356, 357, 719, 919
TaaI	ACNGT	1 cut(s)	913
TaiI	ACGT	1 cut(s)	659
TaqI	TCGA	1 cut(s)	958
TasI	AATT	6 cut(s)	224, 618, 750, 783, 866, 1029
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	3 cut(s)	371, 775, 953
Tru1I	TTAA	4 cut(s)	297, 414, 554, 669
Tru9I	TTAA	4 cut(s)	297, 414, 554, 669
TscAI	CASTG	1 cut(s)	916
TseFI	GTSAC	2 cut(s)	214, 233
TseI	GCWGC	3 cut(s)	127, 164, 836
Tsp45I	GTSAC	2 cut(s)	214, 233
TspDTI	ATGAA	5 cut(s)	17, 236, 355, 743, 779
TspMI	CCCGGG	1 cut(s)	357
TspRI	CASTG	1 cut(s)	916
Van91I	CCANNNNNTGG	1 cut(s)	1003
VneI	GTGCAC	1 cut(s)	612
VspI	ATTAAT	1 cut(s)	414
XapI	RAATTY	4 cut(s)	224, 783, 866, 1029
XceI	RCATGY	1 cut(s)	514
XmaI	CCCGGG	1 cut(s)	357
XspI	CTAG	4 cut(s)	195, 231, 815, 939
ZrmI	AGTACT	1 cut(s)	426
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.