Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Reverse (-)

61284776 .. 61285563

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0495900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAAGGGAGTTCAAGTTTTCCGCCGGAATATCTGATCACCGGCGAAACGTCCAGGAAATATATGGATGTTATGAGCGTCGTGCCGGACGATGTGGAAGAGCTCATTCAGGAGGTTCCTATAGGAGAAGAGCGGATAGAGAAGTTCATGCAGGAGCTCTACAAGGAGATGACGACGACGACCGGCACTGCCACCTCGGCCGAAAATCCGTCGTGGACGGCGGCTGGATACGGTGCAACGGGGCAGTGTTTGCGGTGGAACGGCTGGGAGAGCGAGAGCTGCGGGGCGGCTGTTTCGGACTCGGCGTCGACGGTGATGGTGGGGGTGGAGTACGCCGGGAAAATGGTGCCGGCACCGGAGAGCGGGGGGCTGTGCGGTTGTAAATGCTGGAGTAATGGGGGGTTGGTGGTGGTTGCTGGGAACGCCAACGGGGAGGGAGGAGAGATCAACGGCTGTGGTGGGTGTGGGGCCGAGGAGGATCGGAAGATGGACGGTGAGGATGAGGAGGAGTGGTTTGAGAGGGTGATGAGTTGGGGCCCAGCGGATCTTGTACCTGGTTTCTGGAATGATGTACACTGTGGTGGGTCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

197

Amino Acids

20.93

Weight (kDa)

4.08

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	346, 352
AccBSI	CCGCTC	2 cut(s)	133, 363
AccI	GTMKAC	1 cut(s)	308
AciI	CCGC	9 cut(s)	23, 133, 221, 253, 282, 287, 363, 375, 542
AclWI	GGATC	2 cut(s)	486, 552
AcoI	YGGCCR	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	3 cut(s)	332, 552, 573
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgsI	TTSAA	1 cut(s)	15
AhdI	GACNNNNNGTC	1 cut(s)	304
AjnI	CCWGG	2 cut(s)	53, 553
AleI	CACNNNNGTG	1 cut(s)	579
AluBI	AGCT	3 cut(s)	103, 157, 279
AluI	AGCT	3 cut(s)	103, 157, 279
Alw21I	GWGCWC	2 cut(s)	105, 159
AlwI	GGATC	2 cut(s)	486, 552
AoxI	GGCC	3 cut(s)	198, 468, 535
ApaI	GGGCCC	1 cut(s)	539
ApeKI	GCWGC	1 cut(s)	279
AspS9I	GGNCC	3 cut(s)	468, 535, 536
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	4 cut(s)	31, 325, 506, 535
BaeGI	GKGCMC	1 cut(s)	539
BanI	GGYRCC	2 cut(s)	346, 352
BanII	GRGCYC	3 cut(s)	105, 159, 539
BbsI	GAAGAC	1 cut(s)	579
Bbv12I	GWGCWC	2 cut(s)	105, 159
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	2 cut(s)	310, 481
BceAI	ACGGC	3 cut(s)	234, 277, 466
BciT130I	CCWGG	2 cut(s)	55, 555
BciVI	GTATCC	1 cut(s)	221
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	337
BfmI	CTRYAG	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	221
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	3 cut(s)	222, 280, 288
BlsI	GCNGC	3 cut(s)	223, 281, 289
Bme1390I	CCNGG	3 cut(s)	55, 337, 555
BmeRI	GACNNNNNGTC	1 cut(s)	304
BmgT120I	GGNCC	3 cut(s)	468, 535, 536
BmiI	GGNNCC	6 cut(s)	117, 348, 354, 469, 536, 537
BmrFI	CCNGG	3 cut(s)	55, 337, 555
BpiI	GAAGAC	1 cut(s)	579
BpmI	CTGGAG	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	337
BsaHI	GRCGYC	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	195, 471
BsaWI	WCCGGW	1 cut(s)	355
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 497, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse118I	RCCGGY	3 cut(s)	41, 182, 349
BseBI	CCWGG	2 cut(s)	55, 555
BseDI	CCNNGG	2 cut(s)	195, 471
BseGI	GGATG	2 cut(s)	73, 505
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseRI	GAGGAG	4 cut(s)	453, 488, 518, 521
BseSI	GKGCMC	1 cut(s)	539
BseX3I	CGGCCG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	266
BseYI	CCCAGC	3 cut(s)	264, 416, 538
Bsh1285I	CGRYCG	2 cut(s)	183, 201
BshFI	GGCC	3 cut(s)	200, 470, 537
BshNI	GGYRCC	2 cut(s)	346, 352
BsiEI	CGRYCG	2 cut(s)	183, 201
BsiHKAI	GWGCWC	2 cut(s)	105, 159
BsiSI	CCGG	7 cut(s)	26, 42, 86, 183, 336, 350, 356
BslI	CCNNNNNNNGG	1 cut(s)	362
BsnI	GGCC	3 cut(s)	200, 470, 537
Bsp120I	GGGCCC	1 cut(s)	535
Bsp1286I	GDGCHC	3 cut(s)	105, 159, 539
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	4 cut(s)	36, 444, 478, 544
BspACI	CCGC	9 cut(s)	23, 133, 221, 253, 282, 287, 363, 375, 542
BspANI	GGCC	3 cut(s)	200, 470, 537
BspLI	GGNNCC	6 cut(s)	117, 348, 354, 469, 536, 537
BspPI	GGATC	2 cut(s)	486, 552
BspQI	GCTCTTC	2 cut(s)	93, 123
BspT107I	GGYRCC	2 cut(s)	346, 352
BsrBI	CCGCTC	2 cut(s)	133, 363
BsrFI	RCCGGY	3 cut(s)	41, 182, 349
BsrGI	TGTACA	1 cut(s)	571
BssAI	RCCGGY	3 cut(s)	41, 182, 349
BssECI	CCNNGG	2 cut(s)	195, 471
BssMI	GATC	4 cut(s)	36, 444, 478, 544
BssNI	GRCGYC	1 cut(s)	305
Bst2UI	CCWGG	2 cut(s)	55, 555
Bst4CI	ACNGT	4 cut(s)	233, 313, 494, 578
Bst6I	CTCTTC	2 cut(s)	93, 123
BstACI	GRCGYC	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstAUI	TGTACA	1 cut(s)	571
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	591
BstF5I	GGATG	2 cut(s)	73, 505
BstKTI	GATC	4 cut(s)	39, 447, 481, 547
BstMBI	GATC	4 cut(s)	36, 444, 478, 544
BstMCI	CGRYCG	2 cut(s)	183, 201
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 250, 270, 279, 422
BstNI	CCWGG	2 cut(s)	55, 555
BstSCI	CCNGG	3 cut(s)	53, 335, 553
BstSFI	CTRYAG	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	539
BstV1I	GCAGC	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	579
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BstZI	CGGCCG	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	3 cut(s)	200, 470, 537
BtsCI	GGATG	2 cut(s)	73, 505
BtsI	GCAGTG	2 cut(s)	186, 251
BtsIMutI	CAGTG	3 cut(s)	186, 251, 574
Cac8I	GCNNGC	1 cut(s)	351
Cfr10I	RCCGGY	3 cut(s)	41, 182, 349
Cfr13I	GGNCC	3 cut(s)	468, 535, 536
CseI	GACGC	2 cut(s)	67, 294
CsiI	ACCWGGT	1 cut(s)	553
Csp6I	GTAC	3 cut(s)	331, 551, 572
CspCI	CAANNNNNGTGG	2 cut(s)	436, 471
CviAII	CATG	1 cut(s)	148
CviQI	GTAC	3 cut(s)	331, 551, 572
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	4 cut(s)	38, 446, 480, 546
DpnII	GATC	4 cut(s)	36, 444, 478, 544
DriI	GACNNNNNGTC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	198
EagI	CGGCCG	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	93, 123
Eam1105I	GACNNNNNGTC	1 cut(s)	304
EarI	CTCTTC	2 cut(s)	93, 123
EciI	GGCGGA	1 cut(s)	12
Ecl136II	GAGCTC	2 cut(s)	103, 157
EclXI	CGGCCG	1 cut(s)	198
Eco24I	GRGCYC	3 cut(s)	105, 159, 539
Eco52I	CGGCCG	1 cut(s)	198
Eco53kI	GAGCTC	2 cut(s)	103, 157
EcoICRI	GAGCTC	2 cut(s)	103, 157
EcoO109I	RGGNCCY	1 cut(s)	535
EcoRII	CCWGG	2 cut(s)	53, 553
EcoT38I	GRGCYC	3 cut(s)	105, 159, 539
FaeI	CATG	1 cut(s)	151
FaiI	YATR	5 cut(s)	63, 65, 74, 122, 149
FatI	CATG	1 cut(s)	147
FauI	CCCGC	2 cut(s)	275, 356
FbaI	TGATCA	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	3 cut(s)	222, 280, 288
FokI	GGATG	2 cut(s)	80, 512
FriOI	GRGCYC	3 cut(s)	105, 159, 539
Fsp4HI	GCNGC	3 cut(s)	222, 280, 288
GluI	GCNGC	3 cut(s)	222, 280, 288
GsaI	CCCAGC	3 cut(s)	268, 420, 542
GsuI	CTGGAG	1 cut(s)	409
HaeIII	GGCC	3 cut(s)	200, 470, 537
HapII	CCGG	7 cut(s)	26, 42, 86, 183, 336, 350, 356
HgaI	GACGC	2 cut(s)	67, 294
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	7 cut(s)	26, 42, 86, 183, 336, 350, 356
HphI	GGTGA	4 cut(s)	31, 325, 506, 535
Hpy166II	GTNNAC	3 cut(s)	216, 309, 574
Hpy188I	TCNGA	3 cut(s)	36, 298, 483
Hpy188III	TCNNGA	2 cut(s)	110, 562
Hpy8I	GTNNAC	3 cut(s)	216, 309, 574
Hpy99I	CGWCG	6 cut(s)	83, 178, 181, 214, 310, 313
HpyCH4III	ACNGT	4 cut(s)	233, 313, 494, 578
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	151, 236
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 250, 270, 279, 422
HpyF3I	CTNAG	1 cut(s)	591
HpySE526I	ACGT	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	349
KroNI	GCCGGC	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	36, 444, 478, 544
LguI	GCTCTTC	2 cut(s)	93, 123
LmnI	GCTCC	1 cut(s)	154
Lsp1109I	GCAGC	1 cut(s)	266
MabI	ACCWGGT	1 cut(s)	553
MaeII	ACGT	1 cut(s)	50
MalI	GATC	4 cut(s)	38, 446, 480, 546
MbiI	CCGCTC	2 cut(s)	133, 363
MboI	GATC	4 cut(s)	36, 444, 478, 544
MboII	GAAGA	4 cut(s)	110, 140, 496, 579
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	3 cut(s)	105, 159, 539
MlyI	GAGTC	1 cut(s)	293
MroNI	GCCGGC	1 cut(s)	349
MslI	CAYNNNNRTG	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	7 cut(s)	26, 42, 86, 183, 336, 350, 356
MspR9I	CCNGG	3 cut(s)	55, 337, 555
MvaI	CCWGG	2 cut(s)	55, 555
MwoI	GCNNNNNNNGC	5 cut(s)	197, 250, 270, 279, 422
NaeI	GCCGGC	1 cut(s)	351
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	4 cut(s)	36, 444, 478, 544
NgoMIV	GCCGGC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	6 cut(s)	117, 348, 354, 469, 536, 537
NmeAIII	GCCGAG	3 cut(s)	176, 281, 496
OliI	CACNNNNGTG	1 cut(s)	579
PciSI	GCTCTTC	2 cut(s)	93, 123
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 302
PdiI	GCCGGC	1 cut(s)	351
PfoI	TCCNGGA	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	223, 281, 289
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
Psp124BI	GAGCTC	2 cut(s)	105, 159
Psp6I	CCWGG	2 cut(s)	53, 553
PspFI	CCCAGC	3 cut(s)	264, 416, 538
PspGI	CCWGG	2 cut(s)	53, 553
PspN4I	GGNNCC	6 cut(s)	117, 348, 354, 469, 536, 537
PspOMI	GGGCCC	1 cut(s)	535
PspPI	GGNCC	3 cut(s)	468, 535, 536
PsuI	RGATCY	1 cut(s)	544
RsaI	GTAC	3 cut(s)	332, 552, 573
RsaNI	GTAC	3 cut(s)	331, 551, 572
RseI	CAYNNNNRTG	1 cut(s)	579
SacI	GAGCTC	2 cut(s)	105, 159
SalI	GTCGAC	1 cut(s)	307
SapI	GCTCTTC	2 cut(s)	93, 123
SatI	GCNGC	3 cut(s)	222, 280, 288
Sau3AI	GATC	4 cut(s)	36, 444, 478, 544
Sau96I	GGNCC	3 cut(s)	468, 535, 536
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	3 cut(s)	55, 337, 555
SduI	GDGCHC	3 cut(s)	105, 159, 539
SetI	ASST	7 cut(s)	53, 105, 117, 159, 197, 281, 556
SexAI	ACCWGGT	1 cut(s)	553
SfcI	CTRYAG	1 cut(s)	120
SgrAI	CRCCGGYG	1 cut(s)	41
SgrDI	CGTCGACG	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	579
SsiI	CCGC	9 cut(s)	23, 133, 221, 253, 282, 287, 363, 375, 542
SstI	GAGCTC	2 cut(s)	105, 159
StyD4I	CCNGG	3 cut(s)	53, 335, 553
TaaI	ACNGT	4 cut(s)	233, 313, 494, 578
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	308
TatI	WGTACW	1 cut(s)	571
TauI	GCSGC	2 cut(s)	224, 290
TscAI	CASTG	3 cut(s)	193, 251, 581
TseI	GCWGC	1 cut(s)	279
TspDTI	ATGAA	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	3 cut(s)	193, 251, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.