Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Forward (+)

15444008 .. 15445457

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAGGCTTTTGCAGTTGGCGTTCGTGGTTTCTGTTCTGTTCGGATTGGTCGCCATTCTCATCTACATCATCGGCGTCTCCGATCTCTATGAGACGCATCGACTTACGGAAGAAGATGAGGAGGCGCTGCATTCTTTGCGCACCGGTTTCCAGAAGTGTGTGGCTGCAAATGGATTAGGTTTGAAAGCCGCGCTCGGCAAAGATTACTGTCAAGTCACAATGCAGTTTCCTGCTGACACCATTCCTAAATGGAAGGATACCAAAACCGGTGAGCTTGAAGGATTATCATATGAGTTTAATCTTTGTGAGGCTGTGGCTACATGGGAACAGGTGCGGAATAGTACCACAATACTGACCAGGGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCGTGGCGTAGGATTAATAAAGGAGATCGCCTCAACCGCTGTAAGAATAAAACATTATGCGTGGAAAAACTTTCACTGGTACTCCCTGAAACACCACCATATGTTCCACGGATGTTTCGCCGATGTGCTGTGATTGGAAACTCAGGATCGATCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

186

Amino Acids

20.98

Weight (kDa)

6.73

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	140
AccII	CGCG	1 cut(s)	191
AciI	CCGC	3 cut(s)	189, 334, 436
AclWI	GGATC	1 cut(s)	553
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	2 cut(s)	343, 480
AgeI	ACCGGT	2 cut(s)	143, 266
AgsI	TTSAA	2 cut(s)	184, 278
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
Alw26I	GTCTC	2 cut(s)	82, 86
AlwI	GGATC	1 cut(s)	553
ApeKI	GCWGC	2 cut(s)	127, 164
AseI	ATTAAT	1 cut(s)	414
AsiGI	ACCGGT	2 cut(s)	143, 266
AspLEI	GCGC	3 cut(s)	127, 141, 193
AsuHPI	GGTGA	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	114, 151
BccI	CCATC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	358
BciVI	GTATCC	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	82, 86
BfoI	RGCGCY	1 cut(s)	128
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	3 cut(s)	128, 165, 189
BlsI	GCNGC	3 cut(s)	129, 166, 190
Bme1390I	CCNGG	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	358
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	414, 446
Bsa29I	ATCGAT	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	357, 506
BsaWI	WCCGGW	2 cut(s)	143, 266
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bse118I	RCCGGY	2 cut(s)	143, 266
Bse1I	ACTGG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	358
BseCI	ATCGAT	1 cut(s)	548
BseDI	CCNNGG	2 cut(s)	357, 506
BseGI	GGATG	2 cut(s)	392, 516
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	2 cut(s)	114, 151
Bsh1236I	CGCG	1 cut(s)	191
BshTI	ACCGGT	2 cut(s)	143, 266
BshVI	ATCGAT	1 cut(s)	548
BsiSI	CCGG	2 cut(s)	144, 267
BsmAI	GTCTC	2 cut(s)	82, 86
BsmBI	CGTCTC	2 cut(s)	82, 86
BsmI	GAATGC	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	82, 424, 545, 549
BspACI	CCGC	3 cut(s)	189, 334, 436
BspCNI	CTCAG	1 cut(s)	554
BspDI	ATCGAT	1 cut(s)	548
BspFNI	CGCG	1 cut(s)	191
BspPI	GGATC	1 cut(s)	553
BsrFI	RCCGGY	2 cut(s)	143, 266
BsrI	ACTGG	1 cut(s)	480
BssAI	RCCGGY	2 cut(s)	143, 266
BssECI	CCNNGG	2 cut(s)	357, 506
BssMI	GATC	4 cut(s)	82, 424, 545, 549
BssNI	GRCGYC	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	541
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	2 cut(s)	392, 516
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	3 cut(s)	127, 141, 193
BstKTI	GATC	4 cut(s)	85, 427, 548, 552
BstMAI	GTCTC	2 cut(s)	82, 86
BstMBI	GATC	4 cut(s)	82, 424, 545, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 435
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	356
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	114, 151
BstXI	CCANNNNNNTGG	1 cut(s)	387
Bsu15I	ATCGAT	1 cut(s)	548
BsuI	GTATCC	1 cut(s)	250
BsuTUI	ATCGAT	1 cut(s)	548
BtgI	CCRYGG	1 cut(s)	506
BtsCI	GGATG	2 cut(s)	392, 516
BtsIMutI	CAGTG	1 cut(s)	473
CfoI	GCGC	3 cut(s)	127, 141, 193
Cfr10I	RCCGGY	2 cut(s)	143, 266
ClaI	ATCGAT	1 cut(s)	548
CseI	GACGC	2 cut(s)	64, 103
Csp6I	GTAC	2 cut(s)	342, 479
CspAI	ACCGGT	2 cut(s)	143, 266
CviAII	CATG	1 cut(s)	321
CviJI	RGCY	6 cut(s)	7, 164, 188, 274, 311, 317
CviKI_1	RGCY	6 cut(s)	7, 164, 188, 274, 311, 317
CviQI	GTAC	2 cut(s)	342, 479
DdeI	CTNAG	1 cut(s)	541
DpnI	GATC	4 cut(s)	84, 426, 547, 551
DpnII	GATC	4 cut(s)	82, 424, 545, 549
EcoRII	CCWGG	1 cut(s)	356
Esp3I	CGTCTC	2 cut(s)	82, 86
FaeI	CATG	1 cut(s)	324
FaiI	YATR	8 cut(s)	90, 289, 291, 322, 399, 457, 499, 501
FatI	CATG	1 cut(s)	320
FauNDI	CATATG	2 cut(s)	289, 499
Fnu4HI	GCNGC	3 cut(s)	128, 165, 189
FokI	GGATG	2 cut(s)	399, 523
Fsp4HI	GCNGC	3 cut(s)	128, 165, 189
FspI	TGCGCA	1 cut(s)	140
GlaI	GCGC	3 cut(s)	126, 140, 192
GluI	GCNGC	3 cut(s)	128, 165, 189
HaeII	RGCGCY	1 cut(s)	128
HapII	CCGG	2 cut(s)	144, 267
HgaI	GACGC	2 cut(s)	64, 103
HhaI	GCGC	3 cut(s)	127, 141, 193
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	324
Hin6I	GCGC	3 cut(s)	125, 139, 191
HinP1I	GCGC	3 cut(s)	125, 139, 191
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	2 cut(s)	144, 267
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	2 cut(s)	44, 82
Hpy188III	TCNNGA	2 cut(s)	151, 543
HpyAV	CCTTC	2 cut(s)	247, 272
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	4 cut(s)	13, 130, 167, 223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 435
HpyF3I	CTNAG	1 cut(s)	541
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	324
HspAI	GCGC	3 cut(s)	125, 139, 191
Kzo9I	GATC	4 cut(s)	82, 424, 545, 549
Lsp1109I	GCAGC	2 cut(s)	114, 151
LweI	GCATC	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	4 cut(s)	84, 426, 547, 551
MboI	GATC	4 cut(s)	82, 424, 545, 549
MboII	GAAGA	2 cut(s)	122, 125
MnlI	CCTC	5 cut(s)	112, 115, 301, 385, 440
MseI	TTAA	2 cut(s)	297, 414
MspA1I	CMGCKG	1 cut(s)	438
MspI	CCGG	2 cut(s)	144, 267
MspR9I	CCNGG	1 cut(s)	358
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	358
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	136, 435
NdeI	CATATG	2 cut(s)	289, 499
NdeII	GATC	4 cut(s)	82, 424, 545, 549
NlaIII	CATG	1 cut(s)	324
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	214
NsbI	TGCGCA	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	371
PinAI	ACCGGT	2 cut(s)	143, 266
PkrI	GCNGC	3 cut(s)	129, 166, 190
PshBI	ATTAAT	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	343, 480
RsaNI	GTAC	2 cut(s)	342, 479
SaqAI	TTAA	2 cut(s)	297, 414
SatI	GCNGC	3 cut(s)	128, 165, 189
Sau3AI	GATC	4 cut(s)	82, 424, 545, 549
ScrFI	CCNGG	1 cut(s)	358
SetI	ASST	3 cut(s)	181, 276, 333
SfaNI	GCATC	1 cut(s)	106
SsiI	CCGC	3 cut(s)	189, 334, 436
StyD4I	CCNGG	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	2 cut(s)	100, 548
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	297, 414
Tru9I	TTAA	2 cut(s)	297, 414
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	127, 164
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	355
TspGWI	ACGGA	2 cut(s)	122, 523
TspRI	CASTG	1 cut(s)	480
VspI	ATTAAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.