Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Reverse (-)

33064980 .. 33068008

Gene Structure 3029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0288200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCGGATGACAATAAAAGAGGGAAATTTGTCCCACACATTCCATTTGATTTGATATTTGAGATCCTGACCTGGGTGTCCATTGAGCACTTACTCAGATTCCAATTTGTTTGCAAGGACTGGTATGCCTTGATTCGAAACCCCAAGTTCATAGAAAGGCAGTTTGAACGCGCTAGTAGCTTTCAAAAAATTAGTGATCTTGTAAAAGAGGAAATCGATGGCATACTACAGCCTATTAATATCAACCAAAAATACAAGAAGTTTGCGAGTTGTTTTGGCTTGTTTTTAGAGATGAGTCTTACTGATAGCCGATCATGCCGCATCAGAAACCCGGTAACCCGCCAAGTAGTTTATTTGCCTCTTGCACACGAGGGTGCGAACCAATACGACTTTGCTCTCAATAAAGTCACTGGTGAGTGTAAAGTGGTATGTTACTATTATAATGGTAATTGTGAAGCAGGGTTTCAAGTCATAACTGTTGGAGATGAGCAGTGGAGGCTAATGAGACATCCAAACCAAGAGCTGTTAGAACAAGGCATACTTTTTGCCGATCATGGAGAGTATATTGGAGCAAACAATGGGATTGGACATTTTGCTGACTTGATTGAAGATGGAGAAGGTTATCGACTAGAAGTGCACACTTTGGAGAAGTGGAAGGAATGCATCATAAGTACTTGCCGTGTGCCACAAGAAGCTTTCGAAGACTTGTCTGAAGTTCTGTTTTGCCAATGGGATGGGCATGTTGCTGTTGCGAAGATTGGAGACGAAGATATCAGTGTTTTAAGGTTAGAGGATTACATGGAGAATAGGTGGACCGAAAGAAAGATTGTGGTTCAGTTGGAAATTTTGAAGGACGAGCCGAATTTGGATGAGGAGATCATTAAGTTGCGTGCTTGTTCTAATGAACTCACCATAGATGCCGCTGGTTCAAGAATTTACTATGATATGACAAGGCAGGTGGTTTTAGCCGAATATGACATGGAAAGCACAAATGAAGATGAAGCATTCACTTGGCTTAGGCCAAGCCTTATGGCTCTCAAGGGAATGAAACGAGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

353

Amino Acids

41.11

Weight (kDa)

4.9

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	13 - 51	1.2e-08	F-box domain
FBA_3	PF08268	88 - 171	1.9e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AarI	CACCTGC	1 cut(s)	946
AasI	GACNNNNNNGTC	1 cut(s)	76
Acc36I	ACCTGC	1 cut(s)	946
AccII	CGCG	1 cut(s)	171
AciI	CCGC	4 cut(s)	5, 319, 340, 921
AclWI	GGATC	1 cut(s)	58
AcsI	RAATTY	4 cut(s)	26, 843, 862, 933
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	1 cut(s)	673
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	6 cut(s)	167, 185, 467, 608, 850, 930
AjnI	CCWGG	1 cut(s)	71
AleI	CACNNNNGTG	1 cut(s)	372
AluBI	AGCT	3 cut(s)	180, 523, 695
AluI	AGCT	3 cut(s)	180, 523, 695
Alw21I	GWGCWC	2 cut(s)	90, 639
Alw26I	GTCTC	2 cut(s)	499, 756
Alw44I	GTGCAC	1 cut(s)	635
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	1019
ApaLI	GTGCAC	1 cut(s)	635
ApoI	RAATTY	4 cut(s)	26, 843, 862, 933
AseI	ATTAAT	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	813
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	425, 901
AsuII	TTCGAA	2 cut(s)	136, 699
AvaII	GGWCC	1 cut(s)	813
BaeGI	GKGCMC	1 cut(s)	639
BauI	CACGAG	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	2 cut(s)	90, 639
BccI	CCATC	3 cut(s)	212, 605, 728
BceAI	ACGGC	1 cut(s)	663
BciT130I	CCWGG	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	499, 756
BfaI	CTAG	2 cut(s)	174, 629
BfmI	CTRYAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	946
BisI	GCNGC	2 cut(s)	319, 921
BlsI	GCNGC	2 cut(s)	320, 922
BmcAI	AGTACT	1 cut(s)	673
Bme1390I	CCNGG	2 cut(s)	73, 332
Bme18I	GGWCC	1 cut(s)	813
BmgT120I	GGNCC	1 cut(s)	813
BmrFI	CCNGG	2 cut(s)	73, 332
BmsI	GCATC	3 cut(s)	330, 672, 907
BpiI	GAAGAC	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	1016
Bpu14I	TTCGAA	2 cut(s)	136, 699
BpuEI	CTTGAG	1 cut(s)	1022
BpuMI	CCSGG	1 cut(s)	332
Bsa29I	ATCGAT	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	794, 824
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	2 cut(s)	125, 415
BseBI	CCWGG	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	4 cut(s)	13, 508, 739, 874
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	2 cut(s)	125, 415
BseRI	GAGGAG	1 cut(s)	887
BseSI	GKGCMC	1 cut(s)	639
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	1021
BshVI	ATCGAT	1 cut(s)	216
BsiHKAI	GWGCWC	2 cut(s)	90, 639
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	2 cut(s)	499, 756
BsmBI	CGTCTC	1 cut(s)	756
BsmFI	GGGAC	1 cut(s)	17
BsmI	GAATGC	2 cut(s)	665, 1004
BsnI	GGCC	1 cut(s)	1021
Bsp119I	TTCGAA	2 cut(s)	136, 699
Bsp1286I	GDGCHC	2 cut(s)	90, 639
Bsp143I	GATC	5 cut(s)	63, 196, 311, 550, 876
BspACI	CCGC	4 cut(s)	5, 319, 340, 921
BspANI	GGCC	1 cut(s)	1021
BspCNI	CTCAG	1 cut(s)	108
BspDI	ATCGAT	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	171
BspMI	ACCTGC	1 cut(s)	946
BspPI	GGATC	1 cut(s)	58
BspT104I	TTCGAA	2 cut(s)	136, 699
BsrI	ACTGG	2 cut(s)	125, 415
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	5 cut(s)	63, 196, 311, 550, 876
BssSI	CACGAG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	478
BstBI	TTCGAA	2 cut(s)	136, 699
BstC8I	GCNNGC	1 cut(s)	891
BstDEI	CTNAG	2 cut(s)	95, 1016
BstEII	GGTNACC	1 cut(s)	334
BstF5I	GGATG	4 cut(s)	13, 508, 739, 874
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	5 cut(s)	66, 199, 314, 553, 879
BstMAI	GTCTC	2 cut(s)	499, 756
BstMBI	GATC	5 cut(s)	63, 196, 311, 550, 876
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 315, 496
BstNI	CCWGG	1 cut(s)	73
BstNSI	RCATGY	1 cut(s)	743
BstPI	GGTNACC	1 cut(s)	334
BstSCI	CCNGG	2 cut(s)	71, 330
BstSFI	CTRYAG	1 cut(s)	227
BstSLI	GKGCMC	1 cut(s)	639
BstUI	CGCG	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	1 cut(s)	63
BstXI	CCANNNNNNTGG	1 cut(s)	734
BstYI	RGATCY	1 cut(s)	63
Bsu15I	ATCGAT	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	1021
BsuTUI	ATCGAT	1 cut(s)	216
BtsCI	GGATG	4 cut(s)	13, 508, 739, 874
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	3 cut(s)	408, 497, 781
BveI	ACCTGC	1 cut(s)	946
Cac8I	GCNNGC	1 cut(s)	891
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	813
ClaI	ATCGAT	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	672
CspCI	CAANNNNNGTGG	2 cut(s)	939, 974
CviAII	CATG	5 cut(s)	315, 554, 740, 799, 979
CviQI	GTAC	1 cut(s)	672
DdeI	CTNAG	2 cut(s)	95, 1016
DpnI	GATC	5 cut(s)	65, 198, 313, 552, 878
DpnII	GATC	5 cut(s)	63, 196, 311, 550, 876
DrdI	GACNNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	76
EciI	GGCGGA	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	772
Eco47I	GGWCC	1 cut(s)	813
Eco57I	CTGAAG	1 cut(s)	732
Eco91I	GGTNACC	1 cut(s)	334
EcoO65I	GGTNACC	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	71
EcoRV	GATATC	1 cut(s)	772
EcoT22I	ATGCAT	1 cut(s)	665
Esp3I	CGTCTC	1 cut(s)	756
FaeI	CATG	5 cut(s)	318, 557, 743, 802, 982
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	5 cut(s)	314, 553, 739, 798, 978
FauI	CCCGC	1 cut(s)	347
Fnu4HI	GCNGC	2 cut(s)	319, 921
FokI	GGATG	4 cut(s)	20, 495, 746, 881
Fsp4HI	GCNGC	2 cut(s)	319, 921
FspBI	CTAG	2 cut(s)	174, 629
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	2 cut(s)	319, 921
HaeIII	GGCC	1 cut(s)	1021
HapII	CCGG	1 cut(s)	332
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	5 cut(s)	318, 557, 743, 802, 982
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	693
HinfI	GANTC	3 cut(s)	99, 133, 295
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	2 cut(s)	425, 901
Hpy166II	GTNNAC	2 cut(s)	637, 813
Hpy188I	TCNGA	3 cut(s)	98, 326, 712
Hpy188III	TCNNGA	2 cut(s)	67, 930
Hpy8I	GTNNAC	2 cut(s)	637, 813
HpyAV	CCTTC	3 cut(s)	611, 649, 844
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	4 cut(s)	114, 365, 637, 663
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 315, 496
HpyF3I	CTNAG	2 cut(s)	95, 1016
Hsp92II	CATG	5 cut(s)	318, 557, 743, 802, 982
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	5 cut(s)	63, 196, 311, 550, 876
LmnI	GCTCC	1 cut(s)	569
LpnPI	CCDG	9 cut(s)	58, 80, 85, 106, 345, 396, 444, 909, 941
LweI	GCATC	3 cut(s)	330, 672, 907
MaeI	CTAG	2 cut(s)	174, 629
MaeIII	GTNAC	3 cut(s)	334, 406, 431
MalI	GATC	5 cut(s)	65, 198, 313, 552, 878
MboI	GATC	5 cut(s)	63, 196, 311, 550, 876
MboII	GAAGA	5 cut(s)	620, 713, 766, 779, 1007
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	2 cut(s)	90, 639
MluCI	AATT	7 cut(s)	26, 104, 189, 448, 843, 862, 933
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	2 cut(s)	460, 819
MnlI	CCTC	7 cut(s)	14, 202, 364, 369, 489, 784, 865
Mph1103I	ATGCAT	1 cut(s)	665
MseI	TTAA	3 cut(s)	237, 782, 882
MslI	CAYNNNNRTG	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	2 cut(s)	73, 332
Mva1269I	GAATGC	2 cut(s)	665, 1004
MvaI	CCWGG	1 cut(s)	73
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	177, 315, 496
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	5 cut(s)	63, 196, 311, 550, 876
NlaIII	CATG	5 cut(s)	318, 557, 743, 802, 982
NmuCI	GTSAC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	665
NspI	RCATGY	1 cut(s)	743
NspV	TTCGAA	2 cut(s)	136, 699
OliI	CACNNNNGTG	1 cut(s)	372
PaqCI	CACCTGC	1 cut(s)	946
PctI	GAATGC	2 cut(s)	665, 1004
PfeI	GAWTC	2 cut(s)	99, 133
PkrI	GCNGC	2 cut(s)	320, 922
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PshBI	ATTAAT	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	71
PspEI	GGTNACC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	813
PsrI	GAACNNNNNNTAC	2 cut(s)	522, 554
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	237, 782, 882
SatI	GCNGC	2 cut(s)	319, 921
Sau3AI	GATC	5 cut(s)	63, 196, 311, 550, 876
Sau96I	GGNCC	1 cut(s)	813
ScaI	AGTACT	1 cut(s)	673
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	73, 332
SduI	GDGCHC	2 cut(s)	90, 639
SetI	ASST	8 cut(s)	74, 182, 525, 622, 697, 788, 812, 960
SfaNI	GCATC	3 cut(s)	330, 672, 907
SfcI	CTRYAG	1 cut(s)	227
SfuI	TTCGAA	2 cut(s)	136, 699
SinI	GGWCC	1 cut(s)	813
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	1037
SmoI	CTYRAG	1 cut(s)	1037
Sse9I	AATT	7 cut(s)	26, 104, 189, 448, 843, 862, 933
SsiI	CCGC	4 cut(s)	5, 319, 340, 921
SspMI	CTAG	2 cut(s)	174, 629
StyD4I	CCNGG	2 cut(s)	71, 330
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	4 cut(s)	136, 216, 625, 699
TaqII	GACCGA	1 cut(s)	830
TasI	AATT	7 cut(s)	26, 104, 189, 448, 843, 862, 933
TatI	WGTACW	1 cut(s)	671
TauI	GCSGC	2 cut(s)	321, 923
TfiI	GAWTC	2 cut(s)	99, 133
Tru1I	TTAA	3 cut(s)	237, 782, 882
Tru9I	TTAA	3 cut(s)	237, 782, 882
TscAI	CASTG	3 cut(s)	415, 497, 781
TseFI	GTSAC	1 cut(s)	406
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	5 cut(s)	139, 918, 1008, 1014, 1061
TspRI	CASTG	3 cut(s)	415, 497, 781
VneI	GTGCAC	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	813
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	4 cut(s)	26, 843, 862, 933
XceI	RCATGY	1 cut(s)	743
XspI	CTAG	2 cut(s)	174, 629
ZrmI	AGTACT	1 cut(s)	673
Zsp2I	ATGCAT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.