Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Forward (+)

26417341 .. 26421073

Gene Structure 3733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033372

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAAGCTGTTTTGGTTAGCGTTCGTCATCGCTTTACTGTTTGGATTGGTCGCCATCCTCATCTACATCACCGGAGTCTCCGATCTCTATGAGATCAATCGGCTCACCGATGATGATTTGGAAGCACTGCAAAATCTGCAGAGCCGTTTCCAGAAATGTGTGGCTGCGAATGGATTAGGTTTACAAGCTGAGACTAGTAAAGACTACTGCGGAGTCACCATGAAATTTCCTAGTGACACCATTCCTAAATGGAAAGATCCCAAAACCAATGAGCTTGAAGGTTTATCGTATGAGTTTAATCTATGTGAAGCTGTGGCTACTTGGGAACAGTTGAGTACTGTGCGGAATAGTACCACCATTCTCACTCGGGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCATGGCTTAGGATTAATAAAGGAGTACTACTTGACCGCTGTAAGAATAAAACTTTGTGTGTGGAGAAACTTTCTCTGGTACTCCCTTTCACACCACCATATGTCCCTCGCATGTTTGGCCATTGTGCTGTTATCGGAAACTCGACCAATCTTTTAAAAACAAAGTTTGGGAGAGAGATAGATGGCTATGATGCAGTTGTTAGAGAAAATAGTGCACCAATTCAGAACTATATTGATCATGTGGGCAAGAAATGCATGTTTCGGCTTCTTAATAGAGGATCCGCTAAAGCTCTTGATAAAGTTGTGGAGTTAGATGAGTCCAGGAAGGAGGTCTTAATCATCAAAACAACAATTCATGACACTATGAACAAGATGATTCGGCCAGATGCATTCCTTTGTTTCGTTAATGATGTTAAAGTCAGTAATACAGTTGACCAAAGGGCTCGTAATATTATTCCTGGTGCAGAGGGTTTTCTAAGACAGAAGCTATCTGGCCAAGGGCTTGCATTTATAATTGTAGGTGGATCTGTTGTGACTAGCTACAACAGTCAACGTCCAAATCAAATACAATGGGCCCATGAGAAGAGCAGTGTTTGGTCTAATAACATAGGTTGTGGACTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

345

Amino Acids

38.71

Weight (kDa)

8.29

Isoelectric Point (pI)

27.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_29	PF00777	169 - 252	8.6e-17	Glycosyltransferase family 29 (sialyltransferase)
AIM24	PF01987	249 - 315	2.1e-08	Mitochondrial biogenesis AIM24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	920
AciI	CCGC	4 cut(s)	210, 343, 445, 690
AclWI	GGATC	4 cut(s)	251, 681, 694, 940
AcoI	YGGCCR	3 cut(s)	526, 788, 901
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	4 cut(s)	337, 352, 435, 489
AgsI	TTSAA	1 cut(s)	278
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	2 cut(s)	728, 865
AluBI	AGCT	7 cut(s)	7, 188, 274, 311, 698, 895, 948
AluI	AGCT	7 cut(s)	7, 188, 274, 311, 698, 895, 948
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	2 cut(s)	82, 185
Alw44I	GTGCAC	1 cut(s)	621
AlwI	GGATC	4 cut(s)	251, 681, 694, 940
Ama87I	CYCGRG	1 cut(s)	366
AoxI	GGCC	4 cut(s)	526, 788, 901, 981
ApaI	GGGCCC	1 cut(s)	985
ApaLI	GTGCAC	1 cut(s)	621
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	224
AseI	ATTAAT	1 cut(s)	423
AspS9I	GGNCC	2 cut(s)	981, 982
AsuHPI	GGTGA	3 cut(s)	61, 97, 208
AvaI	CYCGRG	1 cut(s)	366
BaeGI	GKGCMC	2 cut(s)	625, 985
BalI	TGGCCA	2 cut(s)	528, 903
BamHI	GGATCC	1 cut(s)	686
BanII	GRGCYC	2 cut(s)	853, 985
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	3 cut(s)	62, 390, 584
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	2 cut(s)	730, 867
BclI	TGATCA	1 cut(s)	643
BcoDI	GTCTC	2 cut(s)	82, 185
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	3 cut(s)	195, 231, 945
BfmI	CTRYAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmcAI	AGTACT	2 cut(s)	337, 435
Bme1390I	CCNGG	2 cut(s)	730, 867
BmeT110I	CYCGRG	1 cut(s)	366
BmgT120I	GGNCC	2 cut(s)	981, 982
BmiI	GGNNCC	2 cut(s)	688, 983
BmrFI	CCNGG	2 cut(s)	730, 867
BmsI	GCATC	2 cut(s)	589, 784
Bpu10I	CCTNAGC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	904
BsaWI	WCCGGW	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	730, 867
BseDI	CCNNGG	1 cut(s)	904
BseGI	GGATG	2 cut(s)	54, 401
BseMII	CTCAG	1 cut(s)	180
BseSI	GKGCMC	2 cut(s)	625, 985
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	891
BshFI	GGCC	4 cut(s)	528, 790, 903, 983
BsiHKAI	GWGCWC	1 cut(s)	625
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	82, 185
BsmFI	GGGAC	1 cut(s)	497
BsmI	GAATGC	1 cut(s)	797
BsnI	GGCC	4 cut(s)	528, 790, 903, 983
BsoBI	CYCGRG	1 cut(s)	366
Bsp120I	GGGCCC	1 cut(s)	981
Bsp1286I	GDGCHC	3 cut(s)	625, 853, 985
Bsp143I	GATC	6 cut(s)	82, 93, 256, 643, 686, 932
BspACI	CCGC	4 cut(s)	210, 343, 445, 690
BspANI	GGCC	4 cut(s)	528, 790, 903, 983
BspCNI	CTCAG	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	763
BspLI	GGNNCC	2 cut(s)	688, 983
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	4 cut(s)	251, 681, 694, 940
BspQI	GCTCTTC	1 cut(s)	986
BssECI	CCNNGG	1 cut(s)	904
BssMI	GATC	6 cut(s)	82, 93, 256, 643, 686, 932
BssT1I	CCWWGG	1 cut(s)	904
Bst2UI	CCWGG	2 cut(s)	730, 867
Bst4CI	ACNGT	5 cut(s)	39, 330, 340, 838, 956
Bst6I	CTCTTC	1 cut(s)	986
BstAPI	GCANNNNNTGC	2 cut(s)	136, 660
BstC8I	GCNNGC	1 cut(s)	912
BstDEI	CTNAG	3 cut(s)	189, 416, 884
BstF5I	GGATG	2 cut(s)	54, 401
BstKTI	GATC	6 cut(s)	85, 96, 259, 646, 689, 935
BstMAI	GTCTC	2 cut(s)	82, 185
BstMBI	GATC	6 cut(s)	82, 93, 256, 643, 686, 932
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 525, 660
BstNI	CCWGG	2 cut(s)	730, 867
BstNSI	RCATGY	2 cut(s)	523, 667
BstSCI	CCNGG	2 cut(s)	728, 865
BstSFI	CTRYAG	1 cut(s)	137
BstSLI	GKGCMC	2 cut(s)	625, 985
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	3 cut(s)	256, 686, 932
BstXI	CCANNNNNNTGG	1 cut(s)	396
BstYI	RGATCY	3 cut(s)	256, 686, 932
BsuRI	GGCC	4 cut(s)	528, 790, 903, 983
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	54, 401
BtsI	GCAGTG	2 cut(s)	125, 1003
BtsIMutI	CAGTG	2 cut(s)	125, 1003
Cac8I	GCNNGC	1 cut(s)	912
CciI	TCATGA	1 cut(s)	763
Cfr13I	GGNCC	2 cut(s)	981, 982
Csp6I	GTAC	4 cut(s)	336, 351, 434, 488
CviAII	CATG	7 cut(s)	220, 411, 520, 647, 664, 764, 986
CviQI	GTAC	4 cut(s)	336, 351, 434, 488
DdeI	CTNAG	3 cut(s)	189, 416, 884
DpnI	GATC	6 cut(s)	84, 95, 258, 645, 688, 934
DpnII	GATC	6 cut(s)	82, 93, 256, 643, 686, 932
DraI	TTTAAA	1 cut(s)	564
EaeI	YGGCCR	3 cut(s)	526, 788, 901
Eam1104I	CTCTTC	1 cut(s)	986
EarI	CTCTTC	1 cut(s)	986
Eco130I	CCWWGG	1 cut(s)	904
Eco24I	GRGCYC	2 cut(s)	853, 985
Eco88I	CYCGRG	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	728, 865
EcoT14I	CCWWGG	1 cut(s)	904
EcoT22I	ATGCAT	3 cut(s)	412, 665, 799
EcoT38I	GRGCYC	2 cut(s)	853, 985
ErhI	CCWWGG	1 cut(s)	904
FaeI	CATG	7 cut(s)	223, 414, 523, 650, 667, 767, 989
FalI	AAGNNNNNCTT	2 cut(s)	725, 757
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	7 cut(s)	219, 410, 519, 646, 663, 763, 985
FauNDI	CATATG	1 cut(s)	508
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	2 cut(s)	41, 408
FriOI	GRGCYC	2 cut(s)	853, 985
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	3 cut(s)	195, 231, 945
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	4 cut(s)	528, 790, 903, 983
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	7 cut(s)	223, 414, 523, 650, 667, 767, 989
HincII	GTYRAC	2 cut(s)	841, 959
HindII	GTYRAC	2 cut(s)	841, 959
HinfI	GANTC	5 cut(s)	75, 213, 380, 725, 784
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	3 cut(s)	61, 97, 208
Hpy166II	GTNNAC	5 cut(s)	182, 623, 841, 959, 1025
Hpy188I	TCNGA	3 cut(s)	82, 545, 633
Hpy188III	TCNNGA	4 cut(s)	151, 368, 701, 764
Hpy8I	GTNNAC	5 cut(s)	182, 623, 841, 959, 1025
HpyAV	CCTTC	2 cut(s)	272, 727
HpyCH4III	ACNGT	5 cut(s)	39, 330, 340, 838, 956
HpyCH4IV	ACGT	1 cut(s)	961
HpyCH4V	TGCA	9 cut(s)	130, 139, 410, 602, 623, 663, 797, 872, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 525, 660
HpyF3I	CTNAG	3 cut(s)	189, 416, 884
HpySE526I	ACGT	1 cut(s)	961
Hsp92II	CATG	7 cut(s)	223, 414, 523, 650, 667, 767, 989
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	6 cut(s)	82, 93, 256, 643, 686, 932
LguI	GCTCTTC	1 cut(s)	986
LpnPI	CCDG	9 cut(s)	85, 164, 470, 715, 742, 804, 852, 879, 885
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	2 cut(s)	589, 784
MaeI	CTAG	3 cut(s)	195, 231, 945
MaeII	ACGT	1 cut(s)	961
MaeIII	GTNAC	3 cut(s)	214, 233, 940
MalI	GATC	6 cut(s)	84, 95, 258, 645, 688, 934
MboI	GATC	6 cut(s)	82, 93, 256, 643, 686, 932
MboII	GAAGA	1 cut(s)	1003
MflI	RGATCY	3 cut(s)	256, 686, 932
MhlI	GDGCHC	3 cut(s)	625, 853, 985
MlsI	TGGCCA	2 cut(s)	528, 903
MluCI	AATT	4 cut(s)	224, 627, 759, 921
MluNI	TGGCCA	2 cut(s)	528, 903
MlyI	GAGTC	3 cut(s)	84, 222, 734
MnlI	CCTC	6 cut(s)	68, 394, 525, 677, 730, 868
Mox20I	TGGCCA	2 cut(s)	528, 903
Mph1103I	ATGCAT	3 cut(s)	412, 665, 799
MscI	TGGCCA	2 cut(s)	528, 903
MseI	TTAA	8 cut(s)	297, 423, 563, 678, 743, 813, 822, 1029
Msp20I	TGGCCA	2 cut(s)	528, 903
MspA1I	CMGCKG	1 cut(s)	447
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	730, 867
Mva1269I	GAATGC	1 cut(s)	797
MvaI	CCWGG	2 cut(s)	730, 867
MwoI	GCNNNNNNNGC	3 cut(s)	136, 525, 660
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	6 cut(s)	82, 93, 256, 643, 686, 932
NlaIII	CATG	7 cut(s)	223, 414, 523, 650, 667, 767, 989
NlaIV	GGNNCC	2 cut(s)	688, 983
NmuCI	GTSAC	3 cut(s)	214, 233, 940
NsiI	ATGCAT	3 cut(s)	412, 665, 799
NspI	RCATGY	2 cut(s)	523, 667
PagI	TCATGA	1 cut(s)	763
PciSI	GCTCTTC	1 cut(s)	986
PctI	GAATGC	1 cut(s)	797
PfeI	GAWTC	2 cut(s)	380, 784
PfoI	TCCNGGA	1 cut(s)	728
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	3 cut(s)	83, 221, 733
PpsI	GAGTC	3 cut(s)	83, 221, 733
PshBI	ATTAAT	1 cut(s)	423
PsiI	TTATAA	1 cut(s)	920
Psp6I	CCWGG	2 cut(s)	728, 865
PspGI	CCWGG	2 cut(s)	728, 865
PspN4I	GGNNCC	2 cut(s)	688, 983
PspOMI	GGGCCC	1 cut(s)	981
PspPI	GGNCC	2 cut(s)	981, 982
PstI	CTGCAG	1 cut(s)	141
PsuI	RGATCY	3 cut(s)	256, 686, 932
RsaI	GTAC	4 cut(s)	337, 352, 435, 489
RsaNI	GTAC	4 cut(s)	336, 351, 434, 488
SapI	GCTCTTC	1 cut(s)	986
SaqAI	TTAA	8 cut(s)	297, 423, 563, 678, 743, 813, 822, 1029
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	6 cut(s)	82, 93, 256, 643, 686, 932
Sau96I	GGNCC	2 cut(s)	981, 982
ScaI	AGTACT	2 cut(s)	337, 435
SchI	GAGTC	3 cut(s)	84, 222, 734
ScrFI	CCNGG	2 cut(s)	730, 867
SduI	GDGCHC	3 cut(s)	625, 853, 985
SfaNI	GCATC	2 cut(s)	589, 784
SfcI	CTRYAG	1 cut(s)	137
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	4 cut(s)	224, 627, 759, 921
SsiI	CCGC	4 cut(s)	210, 343, 445, 690
SspI	AATATT	1 cut(s)	859
SspMI	CTAG	3 cut(s)	195, 231, 945
StyD4I	CCNGG	2 cut(s)	728, 865
StyI	CCWWGG	1 cut(s)	904
TaaI	ACNGT	5 cut(s)	39, 330, 340, 838, 956
TaiI	ACGT	1 cut(s)	964
TaqI	TCGA	1 cut(s)	551
TasI	AATT	4 cut(s)	224, 627, 759, 921
TatI	WGTACW	2 cut(s)	335, 433
TfiI	GAWTC	2 cut(s)	380, 784
Tru1I	TTAA	8 cut(s)	297, 423, 563, 678, 743, 813, 822, 1029
Tru9I	TTAA	8 cut(s)	297, 423, 563, 678, 743, 813, 822, 1029
TscAI	CASTG	2 cut(s)	132, 1003
TseFI	GTSAC	3 cut(s)	214, 233, 940
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	3 cut(s)	214, 233, 940
TspDTI	ATGAA	5 cut(s)	17, 236, 364, 752, 788
TspRI	CASTG	2 cut(s)	132, 1003
VneI	GTGCAC	1 cut(s)	621
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	2 cut(s)	523, 667
XspI	CTAG	3 cut(s)	195, 231, 945
ZrmI	AGTACT	2 cut(s)	337, 435
Zsp2I	ATGCAT	3 cut(s)	412, 665, 799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.