Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Reverse (-)

368253 .. 373511

Gene Structure 5259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000744.1_g000102.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggctgcaagctccagaccgagtatttcttccgccctacaacactcgtcatggccaccgatcttccactatcgactccgtctccgccgccttatagaagtcaccaccacctcctatgagatcaatcggctcaccgatgatgatttggaaacgctgcaaaatctgcagagccgtttccagaaatgtgtggctgcgaatggattaggtttacaagctgagactagtaaagattactgtggagtcaccatgaaatttccttgtgacaccattcctaaatgggtgcggaatagtaccaccattctcactcgggagttcattgattctttaccaaatggatgggaggattatgcatggcgtaggattaataaaggagtactactattgggtggtctagagttgactagagaggaagagagtttggagttagttggtccaaaagttcagaactggaattggacgcccaattctgtgctcagtgaaggggccttcaagggactaggggaatttttgaaggaggagttggactcggattcagaatatgagtcggagagtgaggtggttgagccggctaatgaagacgagctggctttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

197

Amino Acids

22.42

Weight (kDa)

4.68

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	33, 85, 88, 283
AcoI	YGGCCR	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	251, 503
AcyI	GRCGYC	1 cut(s)	458
AfaI	GTAC	2 cut(s)	292, 375
AgsI	TTSAA	2 cut(s)	490, 511
AhlI	ACTAGT	1 cut(s)	221
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	3 cut(s)	12, 215, 583
AluI	AGCT	3 cut(s)	12, 215, 583
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	2 cut(s)	86, 212
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	2 cut(s)	53, 483
ApeKI	GCWGC	3 cut(s)	5, 154, 191
ApoI	RAATTY	2 cut(s)	251, 503
AseI	ATTAAT	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	431, 483
AsuHPI	GGTGA	3 cut(s)	94, 124, 235
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	431
BalI	TGGCCA	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	582
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	141, 178
BccI	CCATC	1 cut(s)	330
BceAI	ACGGC	1 cut(s)	156
BcoDI	GTCTC	2 cut(s)	86, 212
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	4 cut(s)	222, 392, 402, 497
BfmI	CTRYAG	1 cut(s)	164
BisI	GCNGC	4 cut(s)	6, 88, 155, 192
BlsI	GCNGC	4 cut(s)	7, 89, 156, 193
BmcAI	AGTACT	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	2 cut(s)	431, 483
BmiI	GGNNCC	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	582
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
BsaHI	GRCGYC	1 cut(s)	458
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bse118I	RCCGGY	1 cut(s)	565
Bse1I	ACTGG	1 cut(s)	452
BseGI	GGATG	1 cut(s)	341
BseMII	CTCAG	2 cut(s)	207, 487
BseNI	ACTGG	1 cut(s)	452
BseRI	GAGGAG	1 cut(s)	530
BseXI	GCAGC	2 cut(s)	141, 178
BshFI	GGCC	2 cut(s)	55, 485
BsiHKAI	GWGCWC	1 cut(s)	474
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	566
BslFI	GGGAC	1 cut(s)	507
BsmAI	GTCTC	2 cut(s)	86, 212
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	507
BsnI	GGCC	2 cut(s)	55, 485
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	60, 120
BspACI	CCGC	4 cut(s)	33, 85, 88, 283
BspANI	GGCC	2 cut(s)	55, 485
BspCNI	CTCAG	2 cut(s)	208, 486
BspLI	GGNNCC	1 cut(s)	484
BspMAI	CTGCAG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	452
BssAI	RCCGGY	1 cut(s)	565
BssMI	GATC	2 cut(s)	60, 120
BssNI	GRCGYC	1 cut(s)	458
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstC8I	GCNNGC	3 cut(s)	10, 567, 585
BstDEI	CTNAG	2 cut(s)	216, 473
BstF5I	GGATG	1 cut(s)	341
BstKTI	GATC	2 cut(s)	63, 123
BstMAI	GTCTC	2 cut(s)	86, 212
BstMBI	GATC	2 cut(s)	60, 120
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	141, 178
BstV2I	GAAGAC	1 cut(s)	582
BstXI	CCANNNNNNTGG	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	55, 485
BtsCI	GGATG	1 cut(s)	341
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	3 cut(s)	10, 567, 585
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	431, 483
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	291, 374
CviAII	CATG	3 cut(s)	51, 247, 351
CviQI	GTAC	2 cut(s)	291, 374
DdeI	CTNAG	2 cut(s)	216, 473
DpnI	GATC	2 cut(s)	62, 122
DpnII	GATC	2 cut(s)	60, 120
EaeI	YGGCCR	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
EciI	GGCGGA	2 cut(s)	22, 74
Eco47I	GGWCC	1 cut(s)	431
Eco88I	CYCGRG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	352
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	3 cut(s)	54, 250, 354
FaiI	YATR	7 cut(s)	52, 95, 117, 248, 348, 352, 540
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	3 cut(s)	50, 246, 350
Fnu4HI	GCNGC	4 cut(s)	6, 88, 155, 192
FokI	GGATG	1 cut(s)	348
Fsp4HI	GCNGC	4 cut(s)	6, 88, 155, 192
FspBI	CTAG	4 cut(s)	222, 392, 402, 497
GluI	GCNGC	4 cut(s)	6, 88, 155, 192
HaeIII	GGCC	2 cut(s)	55, 485
HapII	CCGG	1 cut(s)	566
HgaI	GACGC	1 cut(s)	466
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	3 cut(s)	54, 250, 354
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	6 cut(s)	75, 240, 320, 524, 530, 542
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	3 cut(s)	94, 124, 235
Hpy166II	GTNNAC	2 cut(s)	209, 399
Hpy188I	TCNGA	4 cut(s)	444, 529, 535, 547
Hpy188III	TCNNGA	4 cut(s)	15, 178, 308, 392
Hpy8I	GTNNAC	2 cut(s)	209, 399
HpyAV	CCTTC	3 cut(s)	473, 496, 505
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4V	TGCA	4 cut(s)	8, 157, 166, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	216, 473
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	3 cut(s)	54, 250, 354
KroI	GCCGGC	1 cut(s)	565
KroNI	GCCGGC	1 cut(s)	567
Kzo9I	GATC	2 cut(s)	60, 120
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	5 cut(s)	28, 191, 433, 569, 579
Lsp1109I	GCAGC	2 cut(s)	141, 178
MaeI	CTAG	4 cut(s)	222, 392, 402, 497
MaeIII	GTNAC	3 cut(s)	100, 241, 260
MalI	GATC	2 cut(s)	62, 122
MboI	GATC	2 cut(s)	60, 120
MboII	GAAGA	4 cut(s)	21, 55, 422, 587
MhlI	GDGCHC	1 cut(s)	474
MlsI	TGGCCA	1 cut(s)	55
MluCI	AATT	4 cut(s)	251, 451, 463, 503
MluNI	TGGCCA	1 cut(s)	55
MlyI	GAGTC	4 cut(s)	69, 249, 518, 551
MmeI	TCCRAC	2 cut(s)	501, 525
MnlI	CCTC	5 cut(s)	121, 334, 400, 508, 547
Mox20I	TGGCCA	1 cut(s)	55
Mph1103I	ATGCAT	1 cut(s)	352
MroNI	GCCGGC	1 cut(s)	565
MscI	TGGCCA	1 cut(s)	55
MseI	TTAA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	55
MspI	CCGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	1 cut(s)	163
NaeI	GCCGGC	1 cut(s)	567
NdeII	GATC	2 cut(s)	60, 120
NgoMIV	GCCGGC	1 cut(s)	565
NlaIII	CATG	3 cut(s)	54, 250, 354
NlaIV	GGNNCC	1 cut(s)	484
NmuCI	GTSAC	3 cut(s)	100, 241, 260
NsiI	ATGCAT	1 cut(s)	352
PdiI	GCCGGC	1 cut(s)	567
PfeI	GAWTC	2 cut(s)	320, 530
PflFI	GACNNNGTC	1 cut(s)	78
PkrI	GCNGC	4 cut(s)	7, 89, 156, 193
PleI	GAGTC	4 cut(s)	69, 248, 518, 550
PpsI	GAGTC	4 cut(s)	69, 248, 518, 550
PshBI	ATTAAT	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	484
PspPI	GGNCC	2 cut(s)	431, 483
PstI	CTGCAG	1 cut(s)	168
PsyI	GACNNNGTC	1 cut(s)	78
RsaI	GTAC	2 cut(s)	292, 375
RsaNI	GTAC	2 cut(s)	291, 374
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	4 cut(s)	6, 88, 155, 192
Sau3AI	GATC	2 cut(s)	60, 120
Sau96I	GGNCC	2 cut(s)	431, 483
ScaI	AGTACT	1 cut(s)	375
SchI	GAGTC	4 cut(s)	69, 249, 518, 551
SduI	GDGCHC	1 cut(s)	474
SetI	ASST	6 cut(s)	14, 113, 208, 217, 558, 585
SfcI	CTRYAG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	431
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	4 cut(s)	251, 451, 463, 503
SsiI	CCGC	4 cut(s)	33, 85, 88, 283
SspMI	CTAG	4 cut(s)	222, 392, 402, 497
TaaI	ACNGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	73
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	4 cut(s)	251, 451, 463, 503
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	320, 530
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	3 cut(s)	100, 241, 260
TseI	GCWGC	3 cut(s)	5, 154, 191
Tsp45I	GTSAC	3 cut(s)	100, 241, 260
TspDTI	ATGAA	3 cut(s)	263, 304, 588
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	481
Tth111I	GACNNNGTC	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	431
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	2 cut(s)	251, 503
XbaI	TCTAGA	1 cut(s)	391
XspI	CTAG	4 cut(s)	222, 392, 402, 497
ZrmI	AGTACT	1 cut(s)	375
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.