Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Forward (+)

67487060 .. 67492055

Gene Structure 4996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015525

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAAGCTGTTGTGGTTAGCGTTCGTCATCGCTTTACTGTTTGGATTGGTCGCCATCCTCATCTACATCACCGGAGTCTCCGATCTCTATGAGATCAATCGGCTCACCGATGGTGATTTGGAAGCACTGCAAAATCTGCAGAGCCGTTTCCAGAAATGTGTGGCTGCAAATGGATTAGGTTTACAAGCTGAGACTAGTAAAGATTACTGCGGAGTCACCATGAAATTTCCTAGTGACACCATTCCTAAATTGTTTAATCTATGTGAAGCTGTGGCTACTTGGGAACAGGTGCGGAATAGTACCACCATTCTCACTCAGGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCATGGCTTAGGATTAATAAAGGAGTACTACTTGACCGCTGTAAGAATAAAACTTTGTGTGTGCAGAAACTTTCTCTGGTACTCCCTTTCACACCACCATATGTCCCTCGCATGTTTGGCCGTTGTGCTGTTATCAGAAACTCGGCCGATCTTTTAAAAACAAAGTTTGGGAGAGAGATAGATGGCTATGATGCAGTTGTTAGAGAAAATGGTGCACCAATTCAGAACTATATTGATCATGTGGGCAAGAAATGCATGTTTTTCGGCTTCTTAATAGAGGATCCGCTAAAACTCTTAATAAAGTTGTGGAAGTCCAGGAAGGAGGACTTAATCATCAAAACAACAATTCATGACACTATGAACAAGATGATTCGGCCAGATGCATTCCTTTGTTTCGTTAATGATGTTAAAGTCAGTAATACAGTTGACCAAAAGGCTCGTAATATTATTCCTGGTGCAGAGGGTTTTCTAAGACAGAAGCTATCTGGCCAAGGGCTTGCATTTATAATTGTAGGTGGATCTGGAGTTATACTTGCAACATTTGCCGGCAAAAAAATCCAATTCCCGCGCACTTTTATCCTGTTCCCCAAGCTTCTGGCGTCCTGTAAGATTAATACTTTTAAGACTTGTCAATCTATTGATGGTGCTTGGGAGACAAAAAAGATTCTTGCAGTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

346

Amino Acids

38.72

Weight (kDa)

9.2

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_29	PF00777	152 - 208	6e-12	Glycosyltransferase family 29 (sialyltransferase)
AIM24	PF01987	235 - 293	2e-07	Mitochondrial biogenesis AIM24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	863
AccII	CGCG	1 cut(s)	925
AciI	CCGC	5 cut(s)	210, 292, 394, 641, 923
AclWI	GGATC	3 cut(s)	632, 645, 883
AcoI	YGGCCR	4 cut(s)	475, 501, 731, 844
AcsI	RAATTY	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	956
AfaI	GTAC	3 cut(s)	301, 384, 438
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	2 cut(s)	671, 808
AluBI	AGCT	5 cut(s)	7, 188, 269, 838, 949
AluI	AGCT	5 cut(s)	7, 188, 269, 838, 949
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	3 cut(s)	82, 185, 1004
Alw44I	GTGCAC	1 cut(s)	570
AlwI	GGATC	3 cut(s)	632, 645, 883
AoxI	GGCC	4 cut(s)	475, 501, 731, 844
ApaLI	GTGCAC	1 cut(s)	570
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	224
AseI	ATTAAT	2 cut(s)	372, 969
AspLEI	GCGC	1 cut(s)	927
AsuHPI	GGTGA	4 cut(s)	61, 97, 125, 208
BaeGI	GKGCMC	1 cut(s)	574
BalI	TGGCCA	1 cut(s)	846
BamHI	GGATCC	1 cut(s)	637
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	5 cut(s)	62, 104, 339, 533, 992
BceAI	ACGGC	2 cut(s)	129, 462
BcgI	CGANNNNNNTGC	2 cut(s)	601, 635
BciT130I	CCWGG	2 cut(s)	673, 810
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	3 cut(s)	82, 185, 1004
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	2 cut(s)	195, 231
BfmI	CTRYAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmcAI	AGTACT	1 cut(s)	384
Bme1390I	CCNGG	2 cut(s)	673, 810
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	2 cut(s)	673, 810
BmsI	GCATC	2 cut(s)	538, 727
BpmI	CTGGAG	1 cut(s)	900
Bpu10I	CCTNAGC	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	956
BsaJI	CCNNGG	1 cut(s)	847
BsaWI	WCCGGW	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	902
BseBI	CCWGG	2 cut(s)	673, 810
BseDI	CCNNGG	1 cut(s)	847
BseGI	GGATG	2 cut(s)	54, 350
BseMII	CTCAG	2 cut(s)	180, 329
BseSI	GKGCMC	1 cut(s)	574
BseX3I	CGGCCG	1 cut(s)	501
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	2 cut(s)	440, 834
Bsh1236I	CGCG	1 cut(s)	925
Bsh1285I	CGRYCG	1 cut(s)	504
BshFI	GGCC	4 cut(s)	477, 503, 733, 846
BsiEI	CGRYCG	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	2 cut(s)	72, 903
BslFI	GGGAC	1 cut(s)	446
BsmAI	GTCTC	3 cut(s)	82, 185, 1004
BsmFI	GGGAC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	4 cut(s)	477, 503, 733, 846
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	6 cut(s)	82, 93, 505, 592, 637, 875
BspACI	CCGC	5 cut(s)	210, 292, 394, 641, 923
BspANI	GGCC	4 cut(s)	477, 503, 733, 846
BspCNI	CTCAG	2 cut(s)	181, 328
BspFNI	CGCG	1 cut(s)	925
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	1 cut(s)	639
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	3 cut(s)	632, 645, 883
BsrFI	RCCGGY	1 cut(s)	902
BssAI	RCCGGY	1 cut(s)	902
BssECI	CCNNGG	1 cut(s)	847
BssMI	GATC	6 cut(s)	82, 93, 505, 592, 637, 875
BssNI	GRCGYC	1 cut(s)	956
BssT1I	CCWWGG	1 cut(s)	847
Bst2UI	CCWGG	2 cut(s)	673, 810
Bst4CI	ACNGT	2 cut(s)	39, 781
BstACI	GRCGYC	1 cut(s)	956
BstAPI	GCANNNNNTGC	3 cut(s)	136, 609, 899
BstC8I	GCNNGC	2 cut(s)	855, 904
BstDEI	CTNAG	5 cut(s)	189, 315, 365, 827, 1035
BstF5I	GGATG	2 cut(s)	54, 350
BstFNI	CGCG	1 cut(s)	925
BstHHI	GCGC	1 cut(s)	927
BstKTI	GATC	6 cut(s)	85, 96, 508, 595, 640, 878
BstMAI	GTCTC	3 cut(s)	82, 185, 1004
BstMBI	GATC	6 cut(s)	82, 93, 505, 592, 637, 875
BstMCI	CGRYCG	1 cut(s)	504
BstMWI	GCNNNNNNNGC	4 cut(s)	136, 474, 609, 899
BstNI	CCWGG	2 cut(s)	673, 810
BstNSI	RCATGY	2 cut(s)	472, 616
BstSCI	CCNGG	2 cut(s)	671, 808
BstSFI	CTRYAG	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	1 cut(s)	925
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	2 cut(s)	637, 875
BstXI	CCANNNNNNTGG	2 cut(s)	345, 952
BstYI	RGATCY	2 cut(s)	637, 875
BstZI	CGGCCG	1 cut(s)	501
BsuRI	GGCC	4 cut(s)	477, 503, 733, 846
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	54, 350
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	855, 904
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	1 cut(s)	927
Cfr10I	RCCGGY	1 cut(s)	902
CseI	GACGC	1 cut(s)	945
Csp6I	GTAC	3 cut(s)	300, 383, 437
CviAII	CATG	6 cut(s)	220, 360, 469, 596, 613, 707
CviQI	GTAC	3 cut(s)	300, 383, 437
DdeI	CTNAG	5 cut(s)	189, 315, 365, 827, 1035
DpnI	GATC	6 cut(s)	84, 95, 507, 594, 639, 877
DpnII	GATC	6 cut(s)	82, 93, 505, 592, 637, 875
DraI	TTTAAA	1 cut(s)	513
EaeI	YGGCCR	4 cut(s)	475, 501, 731, 844
EagI	CGGCCG	1 cut(s)	501
EclXI	CGGCCG	1 cut(s)	501
Eco130I	CCWWGG	1 cut(s)	847
Eco52I	CGGCCG	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	671, 808
EcoT14I	CCWWGG	1 cut(s)	847
EcoT22I	ATGCAT	3 cut(s)	361, 614, 742
ErhI	CCWWGG	1 cut(s)	847
FaeI	CATG	6 cut(s)	223, 363, 472, 599, 616, 710
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	6 cut(s)	219, 359, 468, 595, 612, 706
FauI	CCCGC	1 cut(s)	930
FauNDI	CATATG	1 cut(s)	457
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	2 cut(s)	41, 357
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	195, 231
GlaI	GCGC	1 cut(s)	926
GluI	GCNGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	900
HaeIII	GGCC	4 cut(s)	477, 503, 733, 846
HapII	CCGG	2 cut(s)	72, 903
HgaI	GACGC	1 cut(s)	945
HhaI	GCGC	1 cut(s)	927
Hin1I	GRCGYC	1 cut(s)	956
Hin1II	CATG	6 cut(s)	223, 363, 472, 599, 616, 710
Hin6I	GCGC	1 cut(s)	925
HinP1I	GCGC	1 cut(s)	925
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HindIII	AAGCTT	1 cut(s)	947
HinfI	GANTC	5 cut(s)	75, 213, 329, 727, 1021
HpaII	CCGG	2 cut(s)	72, 903
HphI	GGTGA	4 cut(s)	61, 97, 125, 208
Hpy166II	GTNNAC	3 cut(s)	182, 572, 784
Hpy188I	TCNGA	3 cut(s)	82, 494, 582
Hpy188III	TCNNGA	4 cut(s)	151, 317, 707, 879
Hpy8I	GTNNAC	3 cut(s)	182, 572, 784
HpyAV	CCTTC	1 cut(s)	670
HpyCH4III	ACNGT	2 cut(s)	39, 781
HpyF10VI	GCNNNNNNNGC	4 cut(s)	136, 474, 609, 899
HpyF3I	CTNAG	5 cut(s)	189, 315, 365, 827, 1035
Hsp92I	GRCGYC	1 cut(s)	956
Hsp92II	CATG	6 cut(s)	223, 363, 472, 599, 616, 710
HspAI	GCGC	1 cut(s)	925
KroI	GCCGGC	1 cut(s)	902
KroNI	GCCGGC	1 cut(s)	904
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	6 cut(s)	82, 93, 505, 592, 637, 875
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	2 cut(s)	538, 727
MaeI	CTAG	2 cut(s)	195, 231
MaeIII	GTNAC	2 cut(s)	214, 233
MalI	GATC	6 cut(s)	84, 95, 507, 594, 639, 877
MboI	GATC	6 cut(s)	82, 93, 505, 592, 637, 875
MflI	RGATCY	2 cut(s)	637, 875
MhlI	GDGCHC	1 cut(s)	574
MlsI	TGGCCA	1 cut(s)	846
MluCI	AATT	6 cut(s)	224, 248, 576, 702, 864, 917
MluNI	TGGCCA	1 cut(s)	846
MlyI	GAGTC	2 cut(s)	84, 222
MnlI	CCTC	6 cut(s)	68, 343, 474, 628, 673, 811
Mox20I	TGGCCA	1 cut(s)	846
Mph1103I	ATGCAT	3 cut(s)	361, 614, 742
MroNI	GCCGGC	1 cut(s)	902
MscI	TGGCCA	1 cut(s)	846
Msp20I	TGGCCA	1 cut(s)	846
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	2 cut(s)	72, 903
MspR9I	CCNGG	2 cut(s)	673, 810
Mva1269I	GAATGC	1 cut(s)	740
MvaI	CCWGG	2 cut(s)	673, 810
MvnI	CGCG	1 cut(s)	925
MwoI	GCNNNNNNNGC	4 cut(s)	136, 474, 609, 899
NaeI	GCCGGC	1 cut(s)	904
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	6 cut(s)	82, 93, 505, 592, 637, 875
NgoMIV	GCCGGC	1 cut(s)	902
NlaIII	CATG	6 cut(s)	223, 363, 472, 599, 616, 710
NlaIV	GGNNCC	1 cut(s)	639
NmeAIII	GCCGAG	1 cut(s)	479
NmuCI	GTSAC	2 cut(s)	214, 233
NsiI	ATGCAT	3 cut(s)	361, 614, 742
NspI	RCATGY	2 cut(s)	472, 616
PagI	TCATGA	1 cut(s)	706
PctI	GAATGC	1 cut(s)	740
PdiI	GCCGGC	1 cut(s)	904
PfeI	GAWTC	3 cut(s)	329, 727, 1021
PfoI	TCCNGGA	1 cut(s)	671
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	2 cut(s)	83, 221
PpsI	GAGTC	2 cut(s)	83, 221
PshBI	ATTAAT	2 cut(s)	372, 969
PsiI	TTATAA	1 cut(s)	863
Psp6I	CCWGG	2 cut(s)	671, 808
PspGI	CCWGG	2 cut(s)	671, 808
PspN4I	GGNNCC	1 cut(s)	639
PstI	CTGCAG	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	637, 875
RsaI	GTAC	3 cut(s)	301, 384, 438
RsaNI	GTAC	3 cut(s)	300, 383, 437
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	6 cut(s)	82, 93, 505, 592, 637, 875
ScaI	AGTACT	1 cut(s)	384
SchI	GAGTC	2 cut(s)	84, 222
ScrFI	CCNGG	2 cut(s)	673, 810
SduI	GDGCHC	1 cut(s)	574
SetI	ASST	8 cut(s)	9, 181, 190, 271, 291, 840, 874, 951
SfaNI	GCATC	2 cut(s)	538, 727
SfcI	CTRYAG	1 cut(s)	137
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	6 cut(s)	224, 248, 576, 702, 864, 917
SsiI	CCGC	5 cut(s)	210, 292, 394, 641, 923
SspI	AATATT	1 cut(s)	802
SspMI	CTAG	2 cut(s)	195, 231
StyD4I	CCNGG	2 cut(s)	671, 808
StyI	CCWWGG	1 cut(s)	847
TaaI	ACNGT	2 cut(s)	39, 781
TasI	AATT	6 cut(s)	224, 248, 576, 702, 864, 917
TatI	WGTACW	1 cut(s)	382
TfiI	GAWTC	3 cut(s)	329, 727, 1021
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	214, 233
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	2 cut(s)	214, 233
TspDTI	ATGAA	5 cut(s)	17, 236, 313, 695, 731
TspRI	CASTG	1 cut(s)	132
VneI	GTGCAC	1 cut(s)	570
VspI	ATTAAT	2 cut(s)	372, 969
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	2 cut(s)	472, 616
XspI	CTAG	2 cut(s)	195, 231
ZrmI	AGTACT	1 cut(s)	384
Zsp2I	ATGCAT	3 cut(s)	361, 614, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.