Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Forward (+)

15445820 .. 15447381

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12440.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAACCAGATGATTCGGGAAATTCCAATAAAAAATCATGTATATCTCCTGCTAGGTGCATCCTTTGGTTCTGCCGCAAAAGGAACTGGGCTCAAGGCTCTTGAATTTGGGCTCTCTATATGTGACTCAGTCGATATGTATGGTTTCACTGTAGATCCAGGATATAAAGAATGGACTAGATACTTCTCAGAAGCTCGACAAGGCCATACTCCTCTACATGGTAGGGCATACTACCAGATGATGGAGTGTTTGGGTCTTATCAAAATTCATTCGCCTCTTCGAGCTGATCCAAACCGTGTTGTCCAATGGGTACCAGAACGAAATTTAGTTACTGCTGCTAGAATTGCATCAGAGAAATTGTTGAGGAGAGTTGGAGCAGGGTATGTAGATCCACTGCGTATGTGTTCAATTGTAAAGAAGCAAGTCAAACTAAAGCTTACATCATTTCTAAGTCTAAGAAAGGCCGCAATAGACCATCAGAAATATGTGAAAAGTGCAACCATGTACCCTCTGGAGCGTAGTCCTCGGCATGGTATGCTTTGCACTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

184

Amino Acids

20.72

Weight (kDa)

9.8

Isoelectric Point (pI)

27.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	310
AccB7I	CCANNNNNTGG	1 cut(s)	241
AciI	CCGC	2 cut(s)	75, 465
AclWI	GGATC	3 cut(s)	149, 281, 383
AcsI	RAATTY	4 cut(s)	21, 104, 264, 322
AdeI	CACNNNGTG	1 cut(s)	549
AfaI	GTAC	2 cut(s)	312, 506
AfiI	CCNNNNNNNGG	3 cut(s)	218, 241, 530
AgsI	TTSAA	2 cut(s)	104, 408
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	3 cut(s)	194, 284, 436
AluI	AGCT	3 cut(s)	194, 284, 436
AlwI	GGATC	3 cut(s)	149, 281, 383
AoxI	GGCC	2 cut(s)	202, 462
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	4 cut(s)	21, 104, 264, 322
Asp718I	GGTACC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	310
BanII	GRGCYC	2 cut(s)	93, 114
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	2 cut(s)	235, 483
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	3 cut(s)	53, 177, 339
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	3 cut(s)	75, 336, 465
BlsI	GCNGC	3 cut(s)	76, 337, 466
Bme1390I	CCNGG	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	2 cut(s)	68, 356
BmuI	ACTGGG	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 241, 530
Bse1I	ACTGG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	524
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	3 cut(s)	218, 241, 530
BseMII	CTCAG	2 cut(s)	141, 201
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	2 cut(s)	201, 379
BseXI	GCAGC	1 cut(s)	322
BshFI	GGCC	2 cut(s)	204, 464
BshNI	GGYRCC	1 cut(s)	310
BslI	CCNNNNNNNGG	3 cut(s)	218, 241, 530
BsnI	GGCC	2 cut(s)	204, 464
Bsp1286I	GDGCHC	2 cut(s)	93, 114
Bsp143I	GATC	3 cut(s)	154, 286, 388
BspACI	CCGC	2 cut(s)	75, 465
BspANI	GGCC	2 cut(s)	204, 464
BspCNI	CTCAG	2 cut(s)	140, 200
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	3 cut(s)	149, 281, 383
BspT107I	GGYRCC	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	3 cut(s)	154, 286, 388
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	3 cut(s)	151, 296, 547
Bst6I	CTCTTC	1 cut(s)	282
BstAPI	GCANNNNNTGC	1 cut(s)	535
BstDEI	CTNAG	4 cut(s)	127, 187, 449, 455
BstF5I	GGATG	1 cut(s)	59
BstKTI	GATC	3 cut(s)	157, 289, 391
BstMBI	GATC	3 cut(s)	154, 286, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 535
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	2 cut(s)	154, 388
BstYI	RGATCY	2 cut(s)	154, 388
BsuRI	GGCC	2 cut(s)	204, 464
BtsCI	GGATG	1 cut(s)	59
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	3 cut(s)	147, 392, 543
Csp6I	GTAC	2 cut(s)	311, 505
CviAII	CATG	4 cut(s)	38, 218, 502, 530
CviJI	RGCY	8 cut(s)	91, 98, 112, 194, 204, 284, 436, 464
CviKI_1	RGCY	8 cut(s)	91, 98, 112, 194, 204, 284, 436, 464
CviQI	GTAC	2 cut(s)	311, 505
DdeI	CTNAG	4 cut(s)	127, 187, 449, 455
DpnI	GATC	3 cut(s)	156, 288, 390
DpnII	GATC	3 cut(s)	154, 286, 388
DraIII	CACNNNGTG	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco24I	GRGCYC	2 cut(s)	93, 114
EcoRII	CCWGG	1 cut(s)	157
EcoT38I	GRGCYC	2 cut(s)	93, 114
FaeI	CATG	4 cut(s)	41, 221, 505, 533
FatI	CATG	4 cut(s)	37, 217, 501, 529
Fnu4HI	GCNGC	3 cut(s)	75, 336, 465
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	2 cut(s)	93, 114
Fsp4HI	GCNGC	3 cut(s)	75, 336, 465
FspBI	CTAG	3 cut(s)	53, 177, 339
GluI	GCNGC	3 cut(s)	75, 336, 465
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	204, 464
Hin1II	CATG	4 cut(s)	41, 221, 505, 533
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	2 cut(s)	13, 125
Hpy188I	TCNGA	3 cut(s)	190, 352, 480
Hpy188III	TCNNGA	3 cut(s)	17, 101, 512
HpyCH4III	ACNGT	3 cut(s)	151, 296, 547
HpyCH4V	TGCA	4 cut(s)	59, 347, 497, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 535
HpyF3I	CTNAG	4 cut(s)	127, 187, 449, 455
Hsp92II	CATG	4 cut(s)	41, 221, 505, 533
KpnI	GGTACC	1 cut(s)	314
Kzo9I	GATC	3 cut(s)	154, 286, 388
LmnI	GCTCC	2 cut(s)	374, 514
LpnPI	CCDG	9 cut(s)	20, 62, 72, 144, 171, 248, 327, 363, 497
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	2 cut(s)	68, 356
MaeI	CTAG	3 cut(s)	53, 177, 339
MaeIII	GTNAC	2 cut(s)	122, 328
MalI	GATC	3 cut(s)	156, 288, 390
MboI	GATC	3 cut(s)	154, 286, 388
MboII	GAAGA	1 cut(s)	269
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	2 cut(s)	154, 388
MhlI	GDGCHC	2 cut(s)	93, 114
MluCI	AATT	7 cut(s)	21, 104, 264, 322, 342, 356, 408
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	5 cut(s)	222, 285, 357, 519, 534
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	344, 535
NdeII	GATC	3 cut(s)	154, 286, 388
NlaIII	CATG	4 cut(s)	41, 221, 505, 533
NlaIV	GGNNCC	1 cut(s)	312
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	241
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	76, 337, 466
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	312
PsuI	RGATCY	2 cut(s)	154, 388
PsyI	GACNNNGTC	1 cut(s)	128
RsaI	GTAC	2 cut(s)	312, 506
RsaNI	GTAC	2 cut(s)	311, 505
SatI	GCNGC	3 cut(s)	75, 336, 465
Sau3AI	GATC	3 cut(s)	154, 286, 388
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	2 cut(s)	93, 114
SetI	ASST	4 cut(s)	58, 196, 286, 438
SfaNI	GCATC	2 cut(s)	68, 356
SfcI	CTRYAG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	7 cut(s)	21, 104, 264, 322, 342, 356, 408
SsiI	CCGC	2 cut(s)	75, 465
SspMI	CTAG	3 cut(s)	53, 177, 339
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	3 cut(s)	151, 296, 547
TaqI	TCGA	3 cut(s)	132, 196, 280
TasI	AATT	7 cut(s)	21, 104, 264, 322, 342, 356, 408
TauI	GCSGC	2 cut(s)	77, 467
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	3 cut(s)	154, 399, 550
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	17, 257
TspRI	CASTG	3 cut(s)	154, 399, 550
Tth111I	GACNNNGTC	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	241
XapI	RAATTY	4 cut(s)	21, 104, 264, 322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XspI	CTAG	3 cut(s)	53, 177, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.