Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Reverse (-)

39775970 .. 39776662

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45565

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGACATTTCCTAGTGACACCATTCCTAAATGGAAAGATCTCAAAACCAATGAGCTTGAAGGTTTATCGTATGAGTTTAATCTGTGTGAAGCTTTGGCTACTTGGGAACAGGTGCGGAATAGTACCACCATTCTCACTTGGGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCATGGCGTAGGATTAATAAAGGAGTACTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

71

Amino Acids

8.4

Weight (kDa)

4.58

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	115
AfaI	GTAC	2 cut(s)	124, 207
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	2 cut(s)	55, 92
AluI	AGCT	2 cut(s)	55, 92
AseI	ATTAAT	1 cut(s)	195
BccI	CCATC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	12
BglII	AGATCT	1 cut(s)	37
BmcAI	AGTACT	1 cut(s)	207
BseGI	GGATG	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	1 cut(s)	115
BssMI	GATC	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	173
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	123, 206
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	3 cut(s)	55, 92, 98
CviKI_1	RGCY	3 cut(s)	55, 92, 98
CviQI	GTAC	2 cut(s)	123, 206
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	184
FaeI	CATG	1 cut(s)	186
FaiI	YATR	3 cut(s)	72, 180, 184
FatI	CATG	1 cut(s)	182
FokI	GGATG	1 cut(s)	180
FspBI	CTAG	1 cut(s)	12
Hin1II	CATG	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	1 cut(s)	95
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MflI	RGATCY	1 cut(s)	37
MnlI	CCTC	1 cut(s)	166
Mph1103I	ATGCAT	1 cut(s)	184
MseI	TTAA	2 cut(s)	78, 195
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	152
PshBI	ATTAAT	1 cut(s)	195
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	2 cut(s)	124, 207
RsaNI	GTAC	2 cut(s)	123, 206
SaqAI	TTAA	2 cut(s)	78, 195
Sau3AI	GATC	1 cut(s)	37
ScaI	AGTACT	1 cut(s)	207
SetI	ASST	4 cut(s)	57, 64, 94, 114
SgeI	CNNG	6 cut(s)	24, 68, 114, 122, 150, 195
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	213
TatI	WGTACW	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	78, 195
Tru9I	TTAA	2 cut(s)	78, 195
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	136
VspI	ATTAAT	1 cut(s)	195
XspI	CTAG	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.