Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Forward (+)

54637900 .. 54638932

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0451300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCATCGAGAACCGGCCTATACAGGCGAGCCCGTGCGCCGATCTCCAAAGAACGCAATTGCTTTGCGTCCGATAACAGTTATGGGCTCTCCCGATGTTGGAAGGTGTCGGTGGGTGGTACATCTTTCCATTACATGCTTGCGGTGATGGGCTGCCATGCTGATCCGGGTCGGATCCGACCACGCAGAGGACGGTTGAAAGAGCCTGACTGCGGGCATGCAGGGTGGAAGGAGATCGGCTTTTGTCGATTGGTGGATGAGACGAAGGATCGTTTCTGTTCCTGGAGCAAGGTGGCGGTGTTCTGGCTTTCAAAGGCAGTGGTGGGCCGGCTCCAACTTGCAAGAGTGATGCAGTTCGCGTTCCGTCGGGGGCGTCTCAAGGTGGACGAAAGTCTTGCTGATTCTCGGTGTTGGATTAGAGTTTTGCGAGATCTGAAATCGGTCATGGATCCGGGTCGGAGACGAGATGGCCTACATCTTGTATGTGCGGCGGAGGTGGAGGCTGTGACAGTGATCGGAGTAGGAGTGGGTATGCTCATTCTGGGTTGGGTGCCAAGATCAGTTTCGAGGCCCAACTCGATTGGGCGGCCCAAATCTGCTGTATGGCCCAGGTCAAGTTTGCAGCCCAATTCTGGGAAGCTTTGGGTGCCTAGATCATTTTGGGTGCTCAAAACAGATTGGGTGTCACGATTGTGGATTGTGGCCCAAGTTTGGACCAAACAGGCGGGCTCCGGCTTACTAGGGTTTCGGTTATGGGATCCTGGTGGAGGGTTTGGGCTCATAAGGCTTTTCTTTAGCCTTCCTTTTAAGTCTTTTATGTACTATGCTTATTTACTATGCAATCGTTTCGATCATAGTAAGATAAGCCTGTTTAGAATATGTGAGCATGGATGTTCGTTAATGAGTGGTACTAGATATATATACCACGTTTTCTTATTTGCCCTCTGTTTTTCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

319

Amino Acids

36.39

Weight (kDa)

10.41

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	550, 646
AccII	CGCG	1 cut(s)	359
AciI	CCGC	7 cut(s)	143, 213, 296, 488, 491, 586, 725
AclWI	GGATC	8 cut(s)	158, 169, 182, 276, 443, 456, 752, 765
AcyI	GRCGYC	1 cut(s)	373
AfaI	GTAC	3 cut(s)	121, 821, 910
AfiI	CCNNNNNNNGG	7 cut(s)	99, 188, 212, 632, 633, 711, 767
AgsI	TTSAA	3 cut(s)	199, 312, 954
AjnI	CCWGG	3 cut(s)	281, 608, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	547, 579
AleI	CACNNNNGTG	1 cut(s)	691
AluBI	AGCT	1 cut(s)	640
AluI	AGCT	1 cut(s)	640
Alw21I	GWGCWC	1 cut(s)	669
Alw26I	GTCTC	3 cut(s)	254, 380, 454
AlwI	GGATC	8 cut(s)	158, 169, 182, 276, 443, 456, 752, 765
AoxI	GGCC	7 cut(s)	16, 325, 469, 569, 587, 605, 702
ApeKI	GCWGC	2 cut(s)	153, 622
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	6 cut(s)	325, 570, 588, 606, 703, 714
AsuC2I	CCSGG	2 cut(s)	168, 453
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	714
BamHI	GGATCC	3 cut(s)	174, 448, 757
BanI	GGYRCC	2 cut(s)	550, 646
BanII	GRGCYC	4 cut(s)	34, 90, 731, 780
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	2 cut(s)	140, 634
BccI	CCATC	2 cut(s)	142, 461
BcgI	CGANNNNNNTGC	4 cut(s)	377, 411, 829, 863
BciT130I	CCWGG	3 cut(s)	283, 610, 762
BcnI	CCSGG	2 cut(s)	168, 453
BcoDI	GTCTC	3 cut(s)	254, 380, 454
BfaI	CTAG	3 cut(s)	651, 740, 912
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	4 cut(s)	154, 489, 587, 623
BlsI	GCNGC	4 cut(s)	155, 490, 588, 624
Bme1390I	CCNGG	5 cut(s)	168, 283, 453, 610, 762
Bme18I	GGWCC	1 cut(s)	714
BmgT120I	GGNCC	6 cut(s)	325, 570, 588, 606, 703, 714
BmiI	GGNNCC	7 cut(s)	176, 332, 450, 552, 648, 730, 759
BmrFI	CCNGG	5 cut(s)	168, 283, 453, 610, 762
BmsI	GCATC	2 cut(s)	14, 339
BoxI	GACNNNNGTC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	2 cut(s)	168, 453
BsaHI	GRCGYC	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	608
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	7 cut(s)	99, 188, 212, 632, 633, 711, 767
Bse118I	RCCGGY	2 cut(s)	14, 327
BseBI	CCWGG	3 cut(s)	283, 610, 762
BseDI	CCNNGG	1 cut(s)	608
BseGI	GGATG	2 cut(s)	262, 896
BseLI	CCNNNNNNNGG	7 cut(s)	99, 188, 212, 632, 633, 711, 767
BseXI	GCAGC	2 cut(s)	140, 634
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	7 cut(s)	18, 327, 471, 571, 589, 607, 704
BshNI	GGYRCC	2 cut(s)	550, 646
BsiHKAI	GWGCWC	1 cut(s)	669
BsiSI	CCGG	5 cut(s)	15, 167, 328, 452, 732
BslI	CCNNNNNNNGG	7 cut(s)	99, 188, 212, 632, 633, 711, 767
BsmAI	GTCTC	3 cut(s)	254, 380, 454
BsmBI	CGTCTC	3 cut(s)	254, 380, 454
BsnI	GGCC	7 cut(s)	18, 327, 471, 571, 589, 607, 704
Bsp1286I	GDGCHC	5 cut(s)	34, 90, 669, 731, 780
BspACI	CCGC	7 cut(s)	143, 213, 296, 488, 491, 586, 725
BspANI	GGCC	7 cut(s)	18, 327, 471, 571, 589, 607, 704
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	7 cut(s)	176, 332, 450, 552, 648, 730, 759
BspPI	GGATC	8 cut(s)	158, 169, 182, 276, 443, 456, 752, 765
BspT107I	GGYRCC	2 cut(s)	550, 646
BsrFI	RCCGGY	2 cut(s)	14, 327
BssAI	RCCGGY	2 cut(s)	14, 327
BssECI	CCNNGG	1 cut(s)	608
BssNI	GRCGYC	1 cut(s)	373
Bst2UI	CCWGG	3 cut(s)	283, 610, 762
Bst4CI	ACNGT	3 cut(s)	80, 195, 511
BstACI	GRCGYC	1 cut(s)	373
BstC8I	GCNNGC	6 cut(s)	30, 141, 215, 219, 329, 727
BstENI	CCTNNNNNAGG	1 cut(s)	765
BstF5I	GGATG	2 cut(s)	262, 896
BstFNI	CGCG	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	40
BstMAI	GTCTC	3 cut(s)	254, 380, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	646, 784
BstNI	CCWGG	3 cut(s)	283, 610, 762
BstNSI	RCATGY	2 cut(s)	139, 221
BstPAI	GACNNNNGTC	1 cut(s)	390
BstSCI	CCNGG	5 cut(s)	166, 281, 451, 608, 760
BstUI	CGCG	1 cut(s)	359
BstV1I	GCAGC	2 cut(s)	140, 634
BstX2I	RGATCY	4 cut(s)	174, 430, 448, 757
BstYI	RGATCY	4 cut(s)	174, 430, 448, 757
BsuRI	GGCC	7 cut(s)	18, 327, 471, 571, 589, 607, 704
BtsCI	GGATG	2 cut(s)	262, 896
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	324, 516
Cac8I	GCNNGC	6 cut(s)	30, 141, 215, 219, 329, 727
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	14, 327
Cfr13I	GGNCC	6 cut(s)	325, 570, 588, 606, 703, 714
CseI	GACGC	2 cut(s)	57, 362
Csp6I	GTAC	3 cut(s)	120, 820, 909
CspCI	CAANNNNNGTGG	2 cut(s)	300, 335
CviAII	CATG	5 cut(s)	136, 158, 218, 445, 887
CviQI	GTAC	3 cut(s)	120, 820, 909
EciI	GGCGGA	1 cut(s)	506
Eco24I	GRGCYC	4 cut(s)	34, 90, 731, 780
Eco47I	GGWCC	1 cut(s)	714
EcoNI	CCTNNNNNAGG	1 cut(s)	765
EcoRII	CCWGG	3 cut(s)	281, 608, 760
EcoT38I	GRGCYC	4 cut(s)	34, 90, 731, 780
Esp3I	CGTCTC	3 cut(s)	254, 380, 454
FaeI	CATG	5 cut(s)	139, 161, 221, 448, 890
FatI	CATG	5 cut(s)	135, 157, 217, 444, 886
FauI	CCCGC	2 cut(s)	206, 718
Fnu4HI	GCNGC	4 cut(s)	154, 489, 587, 623
FokI	GGATG	2 cut(s)	269, 903
FriOI	GRGCYC	4 cut(s)	34, 90, 731, 780
Fsp4HI	GCNGC	4 cut(s)	154, 489, 587, 623
FspBI	CTAG	3 cut(s)	651, 740, 912
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	4 cut(s)	154, 489, 587, 623
GsuI	CTGGAG	1 cut(s)	304
HaeIII	GGCC	7 cut(s)	18, 327, 471, 571, 589, 607, 704
HapII	CCGG	5 cut(s)	15, 167, 328, 452, 732
HgaI	GACGC	2 cut(s)	57, 362
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	373
Hin1II	CATG	5 cut(s)	139, 161, 221, 448, 890
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	1 cut(s)	401
HpaII	CCGG	5 cut(s)	15, 167, 328, 452, 732
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	6 cut(s)	73, 174, 179, 435, 459, 518
Hpy188III	TCNNGA	3 cut(s)	9, 93, 687
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	1 cut(s)	369
HpyAV	CCTTC	4 cut(s)	97, 223, 259, 809
HpyCH4III	ACNGT	3 cut(s)	80, 195, 511
HpyCH4IV	ACGT	1 cut(s)	927
HpyCH4V	TGCA	5 cut(s)	221, 341, 352, 622, 840
HpyF10VI	GCNNNNNNNGC	2 cut(s)	646, 784
HpySE526I	ACGT	1 cut(s)	927
Hsp92I	GRCGYC	1 cut(s)	373
Hsp92II	CATG	5 cut(s)	139, 161, 221, 448, 890
HspAI	GCGC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	327
KroNI	GCCGGC	1 cut(s)	329
LmnI	GCTCC	3 cut(s)	285, 336, 734
Lsp1109I	GCAGC	2 cut(s)	140, 634
LweI	GCATC	2 cut(s)	14, 339
MaeI	CTAG	3 cut(s)	651, 740, 912
MaeII	ACGT	1 cut(s)	927
MaeIII	GTNAC	2 cut(s)	505, 684
MfeI	CAATTG	1 cut(s)	58
MflI	RGATCY	4 cut(s)	174, 430, 448, 757
MhlI	GDGCHC	5 cut(s)	34, 90, 669, 731, 780
MluCI	AATT	2 cut(s)	58, 628
MmeI	TCCRAC	6 cut(s)	80, 152, 202, 358, 392, 437
MnlI	CCTC	6 cut(s)	182, 487, 493, 561, 761, 953
MroNI	GCCGGC	1 cut(s)	327
MseI	TTAA	2 cut(s)	807, 899
MslI	CAYNNNNRTG	1 cut(s)	691
MspI	CCGG	5 cut(s)	15, 167, 328, 452, 732
MspR9I	CCNGG	5 cut(s)	168, 283, 453, 610, 762
MunI	CAATTG	1 cut(s)	58
MvaI	CCWGG	3 cut(s)	283, 610, 762
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	646, 784
NaeI	GCCGGC	1 cut(s)	329
NciI	CCSGG	2 cut(s)	168, 453
NgoMIV	GCCGGC	1 cut(s)	327
NlaIII	CATG	5 cut(s)	139, 161, 221, 448, 890
NlaIV	GGNNCC	7 cut(s)	176, 332, 450, 552, 648, 730, 759
NmuCI	GTSAC	2 cut(s)	505, 684
NspI	RCATGY	2 cut(s)	139, 221
OliI	CACNNNNGTG	1 cut(s)	691
PaeI	GCATGC	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	401
PfoI	TCCNGGA	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	155, 490, 588, 624
PshAI	GACNNNNGTC	1 cut(s)	390
Psp6I	CCWGG	3 cut(s)	281, 608, 760
PspGI	CCWGG	3 cut(s)	281, 608, 760
PspN4I	GGNNCC	7 cut(s)	176, 332, 450, 552, 648, 730, 759
PspPI	GGNCC	6 cut(s)	325, 570, 588, 606, 703, 714
PsuI	RGATCY	4 cut(s)	174, 430, 448, 757
RsaI	GTAC	3 cut(s)	121, 821, 910
RsaNI	GTAC	3 cut(s)	120, 820, 909
RseI	CAYNNNNRTG	1 cut(s)	691
SaqAI	TTAA	2 cut(s)	807, 899
SatI	GCNGC	4 cut(s)	154, 489, 587, 623
Sau96I	GGNCC	6 cut(s)	325, 570, 588, 606, 703, 714
ScrFI	CCNGG	5 cut(s)	168, 283, 453, 610, 762
SduI	GDGCHC	5 cut(s)	34, 90, 669, 731, 780
SetI	ASST	8 cut(s)	108, 294, 384, 498, 614, 642, 930, 959
SfaNI	GCATC	2 cut(s)	14, 339
SinI	GGWCC	1 cut(s)	714
SmiMI	CAYNNNNRTG	1 cut(s)	691
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	2 cut(s)	58, 628
SsiI	CCGC	7 cut(s)	143, 213, 296, 488, 491, 586, 725
SspMI	CTAG	3 cut(s)	651, 740, 912
StyD4I	CCNGG	5 cut(s)	166, 281, 451, 608, 760
TaaI	ACNGT	3 cut(s)	80, 195, 511
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	5 cut(s)	8, 247, 566, 578, 849
TaqII	GACCGA	1 cut(s)	430
TasI	AATT	2 cut(s)	58, 628
TatI	WGTACW	1 cut(s)	819
TauI	GCSGC	2 cut(s)	491, 589
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	2 cut(s)	807, 899
Tru9I	TTAA	2 cut(s)	807, 899
TscAI	CASTG	2 cut(s)	324, 516
TseFI	GTSAC	2 cut(s)	505, 684
TseI	GCWGC	2 cut(s)	153, 622
Tsp45I	GTSAC	2 cut(s)	505, 684
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	2 cut(s)	324, 516
VpaK11BI	GGWCC	1 cut(s)	714
XagI	CCTNNNNNAGG	1 cut(s)	765
XceI	RCATGY	2 cut(s)	139, 221
XspI	CTAG	3 cut(s)	651, 740, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.