Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Forward (+)

54063526 .. 54065189

Gene Structure 1664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009531

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAAGCTGTTGTGGTTAGCGTTCATCATTGCTTTACTGTTTGGATTGGTCGCCATCCTCATCTACATCACCGGAGTCTCCAATCTCTATGAGATCAATCAGCTCACCGATGATGATTTGGAAGCACTGCAAAATCTGCAGAGCCGTTTCCAGAAATGTGTGGCTGCGAATGGATTAGGTTTACAAGCTGAGACTAGTAAAGATTACTGCGGAGTCACCATGAAATTTCCTAGCGACACCATTCCTAAATGGAAAGATCCCAAAACCAATGAGCTTGAAGGTTTATCGTATGAGTTTAATCTATGTGAAGCTGTGGCTACTTGGGAACAGGTGCGGAATAGTACCACCATTCTCACTCGAGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCATGGCTTAGGATTAATAAAGGAGTACTACTTGACCGCTGTAAGAATAAAACTTTGTGTGTGGAGAAACTTTCTCTGGTACTCCCTTTCACACCACCATATGTCCCTCGCATGTTTGGCCGTTGTGCTGTTATCGGAAACTCGGCCAATCTTTTAAAAACAAAGTTTGGGAGAGAGCTAGATGGCTATGATGCAGTTGTTAGAGAAAATGGTGCACCAATTCAGAACTATATTGATCATGTGGGCAAGAAATGCATGTTTCGGCTTCTTAATAGAGGATCCGCTAAAGCTCTTGATAAAATATGGCATTTTTATAACAAGAGCGCTAAGTATATACAAATTTTGCAGAGTCCAGGAAGGAGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

256

Amino Acids

29.0

Weight (kDa)

8.87

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_29	PF00777	166 - 248	2.6e-16	Glycosyltransferase family 29 (sialyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	714
AciI	CCGC	4 cut(s)	210, 334, 436, 681
AclWI	GGATC	3 cut(s)	251, 672, 685
AcoI	YGGCCR	2 cut(s)	517, 543
AcsI	RAATTY	2 cut(s)	224, 738
AfaI	GTAC	3 cut(s)	343, 426, 480
AfeI	AGCGCT	1 cut(s)	724
AgsI	TTSAA	1 cut(s)	278
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	751
AluBI	AGCT	7 cut(s)	7, 103, 188, 274, 311, 577, 689
AluI	AGCT	7 cut(s)	7, 103, 188, 274, 311, 577, 689
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	2 cut(s)	82, 185
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	3 cut(s)	251, 672, 685
Ama87I	CYCGRG	1 cut(s)	357
Aor51HI	AGCGCT	1 cut(s)	724
AoxI	GGCC	2 cut(s)	517, 543
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	2 cut(s)	224, 738
AseI	ATTAAT	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	725
AsuHPI	GGTGA	3 cut(s)	61, 97, 208
AvaI	CYCGRG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	616
BamHI	GGATCC	1 cut(s)	677
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	3 cut(s)	62, 381, 575
BceAI	ACGGC	2 cut(s)	129, 504
BciT130I	CCWGG	1 cut(s)	753
BclI	TGATCA	1 cut(s)	634
BcoDI	GTCTC	2 cut(s)	82, 185
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	3 cut(s)	195, 231, 578
BfmI	CTRYAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	726
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmcAI	AGTACT	1 cut(s)	426
Bme1390I	CCNGG	1 cut(s)	753
BmeT110I	CYCGRG	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	679
BmrFI	CCNGG	1 cut(s)	753
BmsI	GCATC	1 cut(s)	580
Bpu10I	CCTNAGC	1 cut(s)	407
BsaWI	WCCGGW	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	753
BseGI	GGATG	2 cut(s)	54, 392
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	180
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	151
BshFI	GGCC	2 cut(s)	519, 545
BsiHKAI	GWGCWC	1 cut(s)	616
BsiHKCI	CYCGRG	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	488
BsmAI	GTCTC	2 cut(s)	82, 185
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	2 cut(s)	519, 545
BsoBI	CYCGRG	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	4 cut(s)	93, 256, 634, 677
BspACI	CCGC	4 cut(s)	210, 334, 436, 681
BspANI	GGCC	2 cut(s)	519, 545
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	679
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	3 cut(s)	251, 672, 685
BsrDI	GCAATG	1 cut(s)	27
BssMI	GATC	4 cut(s)	93, 256, 634, 677
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	1 cut(s)	39
BstAPI	GCANNNNNTGC	2 cut(s)	136, 651
BstDEI	CTNAG	3 cut(s)	189, 407, 726
BstF5I	GGATG	2 cut(s)	54, 392
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	4 cut(s)	96, 259, 637, 680
BstMAI	GTCTC	2 cut(s)	82, 185
BstMBI	GATC	4 cut(s)	93, 256, 634, 677
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 516, 651
BstNI	CCWGG	1 cut(s)	753
BstNSI	RCATGY	2 cut(s)	514, 658
BstSCI	CCNGG	1 cut(s)	751
BstSFI	CTRYAG	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	2 cut(s)	256, 677
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	2 cut(s)	256, 677
BsuRI	GGCC	2 cut(s)	519, 545
BtsCI	GGATG	2 cut(s)	54, 392
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	125
CfoI	GCGC	1 cut(s)	725
Csp6I	GTAC	3 cut(s)	342, 425, 479
CviAII	CATG	5 cut(s)	220, 402, 511, 638, 655
CviQI	GTAC	3 cut(s)	342, 425, 479
DdeI	CTNAG	3 cut(s)	189, 407, 726
DpnI	GATC	4 cut(s)	95, 258, 636, 679
DpnII	GATC	4 cut(s)	93, 256, 634, 677
DraI	TTTAAA	1 cut(s)	555
EaeI	YGGCCR	2 cut(s)	517, 543
Eco47III	AGCGCT	1 cut(s)	724
Eco88I	CYCGRG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	751
EcoT22I	ATGCAT	2 cut(s)	403, 656
FaeI	CATG	5 cut(s)	223, 405, 514, 641, 658
FalI	AAGNNNNNCTT	1 cut(s)	748
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	5 cut(s)	219, 401, 510, 637, 654
FauNDI	CATATG	1 cut(s)	499
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	2 cut(s)	41, 399
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	3 cut(s)	195, 231, 578
GlaI	GCGC	1 cut(s)	724
GluI	GCNGC	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	726
HaeIII	GGCC	2 cut(s)	519, 545
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	725
Hin1II	CATG	5 cut(s)	223, 405, 514, 641, 658
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HinfI	GANTC	4 cut(s)	75, 213, 371, 748
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	3 cut(s)	61, 97, 208
Hpy166II	GTNNAC	2 cut(s)	182, 614
Hpy188I	TCNGA	2 cut(s)	536, 624
Hpy188III	TCNNGA	3 cut(s)	151, 359, 692
Hpy8I	GTNNAC	2 cut(s)	182, 614
HpyAV	CCTTC	2 cut(s)	272, 750
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	7 cut(s)	130, 139, 401, 593, 614, 654, 745
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 516, 651
HpyF3I	CTNAG	3 cut(s)	189, 407, 726
Hsp92II	CATG	5 cut(s)	223, 405, 514, 641, 658
HspAI	GCGC	1 cut(s)	723
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	4 cut(s)	93, 256, 634, 677
LpnPI	CCDG	5 cut(s)	85, 164, 314, 461, 738
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	3 cut(s)	195, 231, 578
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	4 cut(s)	95, 258, 636, 679
MboI	GATC	4 cut(s)	93, 256, 634, 677
MflI	RGATCY	2 cut(s)	256, 677
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	3 cut(s)	224, 618, 738
MlyI	GAGTC	3 cut(s)	84, 222, 757
MnlI	CCTC	5 cut(s)	68, 385, 516, 668, 753
Mph1103I	ATGCAT	2 cut(s)	403, 656
MseI	TTAA	5 cut(s)	297, 414, 554, 669, 766
MspA1I	CMGCKG	1 cut(s)	438
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	753
MvaI	CCWGG	1 cut(s)	753
MwoI	GCNNNNNNNGC	3 cut(s)	136, 516, 651
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	4 cut(s)	93, 256, 634, 677
NlaIII	CATG	5 cut(s)	223, 405, 514, 641, 658
NlaIV	GGNNCC	1 cut(s)	679
NmeAIII	GCCGAG	1 cut(s)	521
NmuCI	GTSAC	1 cut(s)	214
NsiI	ATGCAT	2 cut(s)	403, 656
NspI	RCATGY	2 cut(s)	514, 658
PaeR7I	CTCGAG	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	371
PfoI	TCCNGGA	1 cut(s)	751
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	3 cut(s)	83, 221, 756
PpsI	GAGTC	3 cut(s)	83, 221, 756
PshBI	ATTAAT	1 cut(s)	414
PsiI	TTATAA	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	1 cut(s)	679
PstI	CTGCAG	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	256, 677
RsaI	GTAC	3 cut(s)	343, 426, 480
RsaNI	GTAC	3 cut(s)	342, 425, 479
SaqAI	TTAA	5 cut(s)	297, 414, 554, 669, 766
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	4 cut(s)	93, 256, 634, 677
ScaI	AGTACT	1 cut(s)	426
SchI	GAGTC	3 cut(s)	84, 222, 757
ScrFI	CCNGG	1 cut(s)	753
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	1 cut(s)	137
Sfr274I	CTCGAG	1 cut(s)	357
SlaI	CTCGAG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	3 cut(s)	224, 618, 738
SsiI	CCGC	4 cut(s)	210, 334, 436, 681
SspMI	CTAG	3 cut(s)	195, 231, 578
StyD4I	CCNGG	1 cut(s)	751
TaaI	ACNGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	358
TasI	AATT	3 cut(s)	224, 618, 738
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	5 cut(s)	297, 414, 554, 669, 766
Tru9I	TTAA	5 cut(s)	297, 414, 554, 669, 766
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	4 cut(s)	13, 17, 236, 355
TspRI	CASTG	1 cut(s)	132
VneI	GTGCAC	1 cut(s)	612
VspI	ATTAAT	1 cut(s)	414
XapI	RAATTY	2 cut(s)	224, 738
XceI	RCATGY	2 cut(s)	514, 658
XhoI	CTCGAG	1 cut(s)	357
XspI	CTAG	3 cut(s)	195, 231, 578
ZrmI	AGTACT	1 cut(s)	426
Zsp2I	ATGCAT	2 cut(s)	403, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.