Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Reverse (-)

38128698 .. 38130280

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG306400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCTGCAAGCTCCAGACCGGGTATTTCGTCTGCCCCACAACACTCGTCATGGCCACCGATCTTCCACTATCGACTCCGTCTCCGCCGCCTTATAGAAGTCACCACCACCTCCTATGAGATCAATCGGCTCACCGATGATGATTTGGAAGCGCTGCAAAATCTGCAAAGCCGTTTCCAGAAATGTGTGAAAGATCTCAAAACCAATGAGCTTGAAGGTTTATCGTATGAGTTTAATCTGTGTGAAGCTTTGGCTACTTGGGAACAGGTGCGGAATAGTACCACCATTCTCACTTGGGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCATGGCGTAGGATTAATAAAGGAGTACTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

123

Amino Acids

14.38

Weight (kDa)

5.67

Isoelectric Point (pI)

57.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	85, 88, 271
AcoI	YGGCCR	1 cut(s)	53
AfaI	GTAC	2 cut(s)	280, 363
AfeI	AGCGCT	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	215
AluBI	AGCT	3 cut(s)	12, 211, 248
AluI	AGCT	3 cut(s)	12, 211, 248
Alw26I	GTCTC	1 cut(s)	86
Aor51HI	AGCGCT	1 cut(s)	153
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	2 cut(s)	5, 154
AseI	ATTAAT	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	94, 124
BalI	TGGCCA	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	318
BceAI	ACGGC	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	155
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	3 cut(s)	6, 88, 155
BlsI	GCNGC	3 cut(s)	7, 89, 156
BmcAI	AGTACT	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	21
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
BseGI	GGATG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	141
BshFI	GGCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	60, 120, 193
BspACI	CCGC	3 cut(s)	85, 88, 271
BspANI	GGCC	1 cut(s)	55
BssMI	GATC	3 cut(s)	60, 120, 193
Bst4CI	ACNGT	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	329
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	3 cut(s)	63, 123, 196
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	3 cut(s)	60, 120, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	279, 362
CviAII	CATG	2 cut(s)	51, 339
CviJI	RGCY	8 cut(s)	5, 12, 55, 130, 171, 211, 248, 254
CviKI_1	RGCY	8 cut(s)	5, 12, 55, 130, 171, 211, 248, 254
CviQI	GTAC	2 cut(s)	279, 362
DpnI	GATC	3 cut(s)	62, 122, 195
DpnII	GATC	3 cut(s)	60, 120, 193
EaeI	YGGCCR	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	74
Eco47III	AGCGCT	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	2 cut(s)	54, 342
FaiI	YATR	6 cut(s)	52, 95, 117, 228, 336, 340
FatI	CATG	2 cut(s)	50, 338
Fnu4HI	GCNGC	3 cut(s)	6, 88, 155
FokI	GGATG	1 cut(s)	336
Fsp4HI	GCNGC	3 cut(s)	6, 88, 155
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	3 cut(s)	6, 88, 155
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	2 cut(s)	54, 342
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	2 cut(s)	75, 308
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	94, 124
Hpy188III	TCNNGA	2 cut(s)	15, 178
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4V	TGCA	4 cut(s)	8, 157, 166, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
Hsp92II	CATG	2 cut(s)	54, 342
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	3 cut(s)	60, 120, 193
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	4 cut(s)	28, 33, 191, 251
Lsp1109I	GCAGC	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	3 cut(s)	62, 122, 195
MboI	GATC	3 cut(s)	60, 120, 193
MboII	GAAGA	1 cut(s)	55
MflI	RGATCY	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	55
MluNI	TGGCCA	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	2 cut(s)	121, 322
Mox20I	TGGCCA	1 cut(s)	55
Mph1103I	ATGCAT	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	55
MseI	TTAA	2 cut(s)	234, 351
Msp20I	TGGCCA	1 cut(s)	55
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	3 cut(s)	60, 120, 193
NlaIII	CATG	2 cut(s)	54, 342
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	308
PflFI	GACNNNGTC	1 cut(s)	78
PkrI	GCNGC	3 cut(s)	7, 89, 156
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PshBI	ATTAAT	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	78
RsaI	GTAC	2 cut(s)	280, 363
RsaNI	GTAC	2 cut(s)	279, 362
SaqAI	TTAA	2 cut(s)	234, 351
SatI	GCNGC	3 cut(s)	6, 88, 155
Sau3AI	GATC	3 cut(s)	60, 120, 193
ScaI	AGTACT	1 cut(s)	363
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	6 cut(s)	14, 113, 213, 220, 250, 270
SsiI	CCGC	3 cut(s)	85, 88, 271
StyD4I	CCNGG	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	73
TatI	WGTACW	1 cut(s)	361
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	234, 351
Tru9I	TTAA	2 cut(s)	234, 351
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	5, 154
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	292
TspGWI	ACGGA	1 cut(s)	68
Tth111I	GACNNNGTC	1 cut(s)	78
VspI	ATTAAT	1 cut(s)	351
ZrmI	AGTACT	1 cut(s)	363
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.