Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Reverse (-)

34838780 .. 34842016

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG169100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAGCTGTTGCGGTTAGCGTTTGTCATCGCTTTACTGTTTGGATTGGTCACCATCCTCATCTACATCACCGGAGTCTCCGATCTCTATGAGATCAATCGGCTCACCGATGATGATTTGGAAGCGCTGCAAAATCTGCAGAGCCGTTTCCAGAAATGTGTGGTGAATTACTGCGGAGTCACCATGAAATTTCCTAGTGACACCATTCCTAAATGGAAAGATCCCAAAACCAATGAGCTTGAAGGTTTATTGTATGAGTTTAATCTGTGTGAAGCTTTGGCTACTTGGGAACAGGTGCGGAATAGTACCACCATTCTCACTCGGGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCATGGCGTAGGATTAATAAAGGAGTACTACTTGACCGCTGTAAGAATAAAACTTTGTGTGCGGAGAAACTTTCTCTGGTACTCCCTTTCACACCACCATATGTCCCTCGCATGTTTGGCTGTTGTGCTGTTATCGAAAACTCGGGCGATCTTTTAAAAACAAAGTTTGGGAGAGAGATAGATGGCTATGATGCAGTTGTTAGAGACAATGGTGCACTAATTCAGCCAGATGCATTCCTTTGTTTCGTTAATGATGTTAAAGTCAGTAATACAGTTGACCAAAGGGCTCGTAATATTATTCCTGGTGCAGAGGGTTTTCTAAGACAGAAGCTATCTGGCCAAGGGCTTGCATTTATAATTGCAGGTGGATCTGTTGTACAGAAAAATCTTGAGGTGGGCAGGGTACTATCTGTTGATGTTTCTTGTATAGCAGTTGTGACTAGCTACAACAGTCAACGTCCAAATCAAATACAATGGGCCCATGAGAAGAGCAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

287

Amino Acids

32.22

Weight (kDa)

6.61

Isoelectric Point (pI)

28.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_29	PF00777	156 - 195	5.6e-07	Glycosyltransferase family 29 (sialyltransferase)
AIM24	PF01987	189 - 269	4.6e-15	Mitochondrial biogenesis AIM24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	719
AarI	CACCTGC	1 cut(s)	716
Acc36I	ACCTGC	1 cut(s)	716
AciI	CCGC	5 cut(s)	13, 174, 298, 400, 425
AclWI	GGATC	2 cut(s)	215, 739
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	5 cut(s)	307, 390, 444, 741, 768
AfeI	AGCGCT	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	5 cut(s)	7, 238, 275, 694, 807
AluI	AGCT	5 cut(s)	7, 238, 275, 694, 807
Alw21I	GWGCWC	1 cut(s)	580
Alw26I	GTCTC	2 cut(s)	82, 561
Alw44I	GTGCAC	1 cut(s)	576
AlwI	GGATC	2 cut(s)	215, 739
Ama87I	CYCGRG	2 cut(s)	321, 505
Aor51HI	AGCGCT	1 cut(s)	126
AoxI	GGCC	2 cut(s)	700, 840
ApaI	GGGCCC	1 cut(s)	844
ApaLI	GTGCAC	1 cut(s)	576
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	188
AseI	ATTAAT	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	840, 841
AsuHPI	GGTGA	5 cut(s)	43, 61, 97, 172, 175
AvaI	CYCGRG	2 cut(s)	321, 505
BaeGI	GKGCMC	2 cut(s)	580, 844
BalI	TGGCCA	1 cut(s)	702
BanII	GRGCYC	2 cut(s)	652, 844
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	3 cut(s)	62, 345, 539
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	82, 561
BfaI	CTAG	2 cut(s)	195, 804
BfmI	CTRYAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	716
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
BmcAI	AGTACT	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	666
BmeT110I	CYCGRG	2 cut(s)	321, 505
BmgT120I	GGNCC	2 cut(s)	840, 841
BmiI	GGNNCC	1 cut(s)	842
BmrFI	CCNGG	1 cut(s)	666
BmsI	GCATC	2 cut(s)	544, 583
BpuEI	CTTGAG	1 cut(s)	773
BsaJI	CCNNGG	1 cut(s)	703
BsaWI	WCCGGW	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	1 cut(s)	703
BseGI	GGATG	2 cut(s)	54, 356
BseSI	GKGCMC	2 cut(s)	580, 844
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	690
BshFI	GGCC	2 cut(s)	702, 842
BsiHKAI	GWGCWC	1 cut(s)	580
BsiHKCI	CYCGRG	2 cut(s)	321, 505
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	452
BsmAI	GTCTC	2 cut(s)	82, 561
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	596
BsnI	GGCC	2 cut(s)	702, 842
BsoBI	CYCGRG	2 cut(s)	321, 505
Bsp120I	GGGCCC	1 cut(s)	840
Bsp1286I	GDGCHC	3 cut(s)	580, 652, 844
Bsp1407I	TGTACA	1 cut(s)	739
Bsp143I	GATC	5 cut(s)	82, 93, 220, 511, 731
BspACI	CCGC	5 cut(s)	13, 174, 298, 400, 425
BspANI	GGCC	2 cut(s)	702, 842
BspLI	GGNNCC	1 cut(s)	842
BspMAI	CTGCAG	1 cut(s)	141
BspMI	ACCTGC	1 cut(s)	716
BspPI	GGATC	2 cut(s)	215, 739
BspQI	GCTCTTC	1 cut(s)	845
BsrGI	TGTACA	1 cut(s)	739
BssECI	CCNNGG	1 cut(s)	703
BssMI	GATC	5 cut(s)	82, 93, 220, 511, 731
BssT1I	CCWWGG	1 cut(s)	703
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	3 cut(s)	39, 637, 815
Bst6I	CTCTTC	1 cut(s)	845
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstAUI	TGTACA	1 cut(s)	739
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	1 cut(s)	683
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	2 cut(s)	54, 356
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	5 cut(s)	85, 96, 223, 514, 734
BstMAI	GTCTC	2 cut(s)	82, 561
BstMBI	GATC	5 cut(s)	82, 93, 220, 511, 731
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 480
BstNI	CCWGG	1 cut(s)	666
BstNSI	RCATGY	1 cut(s)	478
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	664
BstSFI	CTRYAG	1 cut(s)	137
BstSLI	GKGCMC	2 cut(s)	580, 844
BstV1I	GCAGC	1 cut(s)	114
BstX2I	RGATCY	2 cut(s)	220, 731
BstXI	CCANNNNNNTGG	1 cut(s)	351
BstYI	RGATCY	2 cut(s)	220, 731
BsuRI	GGCC	2 cut(s)	702, 842
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	54, 356
BtsI	GCAGTG	1 cut(s)	862
BtsIMutI	CAGTG	1 cut(s)	862
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	1 cut(s)	711
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	840, 841
Csp6I	GTAC	5 cut(s)	306, 389, 443, 740, 767
CviAII	CATG	4 cut(s)	184, 366, 475, 845
CviQI	GTAC	5 cut(s)	306, 389, 443, 740, 767
DdeI	CTNAG	1 cut(s)	683
DpnI	GATC	5 cut(s)	84, 95, 222, 513, 733
DpnII	GATC	5 cut(s)	82, 93, 220, 511, 731
DraI	TTTAAA	1 cut(s)	519
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	1 cut(s)	845
EarI	CTCTTC	1 cut(s)	845
Eco130I	CCWWGG	1 cut(s)	703
Eco24I	GRGCYC	2 cut(s)	652, 844
Eco47III	AGCGCT	1 cut(s)	126
Eco88I	CYCGRG	2 cut(s)	321, 505
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	664
EcoT14I	CCWWGG	1 cut(s)	703
EcoT22I	ATGCAT	2 cut(s)	367, 598
EcoT38I	GRGCYC	2 cut(s)	652, 844
ErhI	CCWWGG	1 cut(s)	703
FaeI	CATG	4 cut(s)	187, 369, 478, 848
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	4 cut(s)	183, 365, 474, 844
FauNDI	CATATG	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	2 cut(s)	41, 363
FriOI	GRGCYC	2 cut(s)	652, 844
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	2 cut(s)	195, 804
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	702, 842
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	4 cut(s)	187, 369, 478, 848
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	2 cut(s)	640, 818
HindII	GTYRAC	2 cut(s)	640, 818
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	3 cut(s)	75, 177, 335
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	5 cut(s)	43, 61, 97, 172, 175
Hpy166II	GTNNAC	3 cut(s)	578, 640, 818
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	3 cut(s)	151, 323, 752
Hpy8I	GTNNAC	3 cut(s)	578, 640, 818
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	3 cut(s)	39, 637, 815
HpyCH4IV	ACGT	1 cut(s)	820
HpyCH4V	TGCA	9 cut(s)	130, 139, 365, 557, 578, 596, 671, 713, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 480
HpyF3I	CTNAG	1 cut(s)	683
HpySE526I	ACGT	1 cut(s)	820
Hsp92II	CATG	4 cut(s)	187, 369, 478, 848
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	5 cut(s)	82, 93, 220, 511, 731
LguI	GCTCTTC	1 cut(s)	845
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	2 cut(s)	544, 583
MaeI	CTAG	2 cut(s)	195, 804
MaeII	ACGT	1 cut(s)	820
MaeIII	GTNAC	4 cut(s)	49, 178, 197, 799
MalI	GATC	5 cut(s)	84, 95, 222, 513, 733
MboI	GATC	5 cut(s)	82, 93, 220, 511, 731
MboII	GAAGA	1 cut(s)	862
MflI	RGATCY	2 cut(s)	220, 731
MhlI	GDGCHC	3 cut(s)	580, 652, 844
MlsI	TGGCCA	1 cut(s)	702
MluCI	AATT	4 cut(s)	166, 188, 582, 720
MluNI	TGGCCA	1 cut(s)	702
MlyI	GAGTC	2 cut(s)	84, 186
MnlI	CCTC	5 cut(s)	68, 349, 480, 667, 748
Mox20I	TGGCCA	1 cut(s)	702
Mph1103I	ATGCAT	2 cut(s)	367, 598
MscI	TGGCCA	1 cut(s)	702
MseI	TTAA	5 cut(s)	261, 378, 518, 612, 621
Msp20I	TGGCCA	1 cut(s)	702
MspA1I	CMGCKG	1 cut(s)	402
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	666
Mva1269I	GAATGC	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	2 cut(s)	136, 480
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	5 cut(s)	82, 93, 220, 511, 731
NlaIII	CATG	4 cut(s)	187, 369, 478, 848
NlaIV	GGNNCC	1 cut(s)	842
NmuCI	GTSAC	4 cut(s)	49, 178, 197, 799
NsiI	ATGCAT	2 cut(s)	367, 598
NspI	RCATGY	1 cut(s)	478
PaqCI	CACCTGC	1 cut(s)	716
PciSI	GCTCTTC	1 cut(s)	845
PctI	GAATGC	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	2 cut(s)	83, 185
PpsI	GAGTC	2 cut(s)	83, 185
PshBI	ATTAAT	1 cut(s)	378
PsiI	TTATAA	1 cut(s)	719
Psp6I	CCWGG	1 cut(s)	664
PspEI	GGTNACC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	1 cut(s)	842
PspOMI	GGGCCC	1 cut(s)	840
PspPI	GGNCC	2 cut(s)	840, 841
PstI	CTGCAG	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	220, 731
RsaI	GTAC	5 cut(s)	307, 390, 444, 741, 768
RsaNI	GTAC	5 cut(s)	306, 389, 443, 740, 767
SapI	GCTCTTC	1 cut(s)	845
SaqAI	TTAA	5 cut(s)	261, 378, 518, 612, 621
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	5 cut(s)	82, 93, 220, 511, 731
Sau96I	GGNCC	2 cut(s)	840, 841
ScaI	AGTACT	1 cut(s)	390
SchI	GAGTC	2 cut(s)	84, 186
ScrFI	CCNGG	1 cut(s)	666
SduI	GDGCHC	3 cut(s)	580, 652, 844
SfaNI	GCATC	2 cut(s)	544, 583
SfcI	CTRYAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
Sse9I	AATT	4 cut(s)	166, 188, 582, 720
SsiI	CCGC	5 cut(s)	13, 174, 298, 400, 425
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	2 cut(s)	195, 804
StyD4I	CCNGG	1 cut(s)	664
StyI	CCWWGG	1 cut(s)	703
TaaI	ACNGT	3 cut(s)	39, 637, 815
TaiI	ACGT	1 cut(s)	823
TaqI	TCGA	1 cut(s)	498
TasI	AATT	4 cut(s)	166, 188, 582, 720
TatI	WGTACW	2 cut(s)	388, 739
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	5 cut(s)	261, 378, 518, 612, 621
Tru9I	TTAA	5 cut(s)	261, 378, 518, 612, 621
TscAI	CASTG	1 cut(s)	862
TseFI	GTSAC	4 cut(s)	49, 178, 197, 799
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	4 cut(s)	49, 178, 197, 799
TspDTI	ATGAA	3 cut(s)	17, 200, 319
TspRI	CASTG	1 cut(s)	862
VneI	GTGCAC	1 cut(s)	576
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	478
XspI	CTAG	2 cut(s)	195, 804
ZrmI	AGTACT	1 cut(s)	390
Zsp2I	ATGCAT	2 cut(s)	367, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.