RLG00000020308

Glycosyltransferase family 29 (sialyltransferase)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
63537526 .. 63545520
7995 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020308

Sequence Viewer

Length: 1584 bp
ATGGGTGCAAAAGTTTTGGCCGATGAATACACAGCAAAAATGGGTGCAAAAGTTTGGCCGATGAATACAGCCAAAGGATCTGAAAACTTCCAATCAGAGTTGGCTCATGGGTTGGAGCTGAGTGGAAAAAGATTCCTCTGGGTGGCAAGACCTCCCAGAGTCGATGGTGCTTCGGAAAGCTTCTTCAAAGCTGGTGTTGATGGTGCCCTTACTGCGTCGTATCTGCCAGATGGGTTTTCAGAGAGGACACGAGGGGCAGAGCTGGTGACGGCGACGTCAACTTCCATTTTGTTCATGGTTTTTGTGACCAAACTTATGGACTCAGCAATTTTGTTCTATCAGATTTTGCCTTGGTTGGGAAGGTTAATAATAATAGGGATTATATCTAAATCAGGAGTCTTTGTAGTCTTAGCTGGCCTCAATGTCGAAAATGAAATACTACATACCCTTGCGTTTTTAGCTGGTGTGATGATTTGGGAACAGAAGTCTCCGGCGAGGCACCCCCCTTTCGCTCTGAAAAAGTCTCCGGTGAGGCACCCCCCTTTCTCTGAAGTGGAGCAATCAATGAAGCTGTTGCGGTTAGCGTTCGTCATCGCTTTACTGTTTGGATTGGTCACCATCCTCATCTACATCACCGGAGTCTCCGATCTCTATGAGATCAATTGGCTCACCAATGATCATTTGGAAGTGCTGCAAAATCTGCAGAGCTGTTTCCAGAAATGTGTGGTGAGTGCGAATGGATTAGGTTTACAAGCTGAGACTAGTAAAGATTACTGCAGAGTCACCATGAAATTTCCTAGGGACACCATTCCTAAATGGAAAGATCCCAAAACCAATGAGCTTGAAGGTTTATCGTATGAGTTTAATCTGTGTGAAGCTTTGGCTACTTGGGAACAGAATAGTACCACCATTCTCACTCGGGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCATGGCGTAGGATTAATAAAGGAGTACTACTTGACCGCTGTAAGAATAAAACTTTGTGTGTGGAGAAACTTTCTCTAGTACTCCCTTTCACACCACCATATGTCCCTCGCATGTTTGGCCGTTGTGCTGATATCGGAAACTCGGGCGATCTTTTAAACACAAAGTTTGGGAGAGAGATAGATGGCTATGATGCAGTTGTTAGAGAAAATGGTGCACCAATTCAGAACTATACTGATCATGTGGGCAAGAAATGTACGTTTAGGCTTCTTAATAGAGGATCCGCTAAAACTCTTGATAAAGTTGTGGAGTTAGATGAGTCCAAGAAGGAGGTCTTGATCATCAAAACAACAATTCGTGACACTATGAACAAGATGATTCGGCCAGATGCATTCCTTTGTTTCGTTAATGATGTTAAAGTCAGTAATACAGTTGACCAATGGGCTCGTAATATTATTCCTGGTGCAGAGGGTTTTCTAAGACAAAAGCTATCTGGCCAAGGGCTTGCATTTATAATTACAGGTGGATCTGATCCATACGCTGTTACACTTTGGGGGATATGCTCTCTTGAGAAACGCCAGCAGTCTGTTTCATACTTTGGGGGATATGCAGTCCTACTTTGTTGA

Protein Analysis

528

Amino Acids

58.84

Weight (kDa)

8.49

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_29 PF00777 353 - 436 1.1e-16 Glycosyltransferase family 29 (sialyltransferase)
AIM24 PF01987 433 - 501 4.9e-07 Mitochondrial biogenesis AIM24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1472
AasI GACNNNNNNGTC 1 cut(s) 274
AatII GACGTC 1 cut(s) 278
AccB1I GGYRCC 3 cut(s) 203, 498, 534
AciI CCGC 3 cut(s) 577, 997, 1242
AclWI GGATC 6 cut(s) 85, 818, 1233, 1246, 1484, 1492
AcoI YGGCCR 5 cut(s) 18, 56, 1078, 1340, 1453
AcsI RAATTY 1 cut(s) 791
AcuI CTGAAG 1 cut(s) 570
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 4 cut(s) 904, 987, 1041, 1216
AfiI CCNNNNNNNGG 2 cut(s) 142, 356
AgsI TTSAA 2 cut(s) 187, 845
AhlI ACTAGT 1 cut(s) 761
AjnI CCWGG 1 cut(s) 1417
Alw21I GWGCWC 1 cut(s) 1177
Alw26I GTCTC 4 cut(s) 492, 528, 646, 752
Alw44I GTGCAC 1 cut(s) 1173
AlwI GGATC 6 cut(s) 85, 818, 1233, 1246, 1484, 1492
Ama87I CYCGRG 2 cut(s) 918, 1102
AoxI GGCC 6 cut(s) 18, 56, 415, 1078, 1340, 1453
ApaLI GTGCAC 1 cut(s) 1173
ApeKI GCWGC 1 cut(s) 691
ApoI RAATTY 1 cut(s) 791
AseI ATTAAT 1 cut(s) 975
AspA2I CCTAGG 1 cut(s) 797
AsuHPI GGTGA 7 cut(s) 277, 541, 607, 625, 661, 739, 775
AvaI CYCGRG 2 cut(s) 918, 1102
AvrII CCTAGG 1 cut(s) 797
BaeGI GKGCMC 2 cut(s) 208, 1177
BalI TGGCCA 1 cut(s) 1455
BamHI GGATCC 1 cut(s) 1238
BanI GGYRCC 3 cut(s) 203, 498, 534
BanII GRGCYC 1 cut(s) 1405
BauI CACGAG 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 1177
BbvI GCAGC 1 cut(s) 678
BccI CCATC 6 cut(s) 158, 194, 224, 626, 942, 1136
BceAI ACGGC 2 cut(s) 285, 1065
BciT130I CCWGG 1 cut(s) 1419
BclI TGATCA 3 cut(s) 676, 1195, 1296
BcoDI GTCTC 4 cut(s) 492, 528, 646, 752
BcuI ACTAGT 1 cut(s) 761
BfaI CTAG 3 cut(s) 762, 798, 1037
BfmI CTRYAG 2 cut(s) 701, 775
BisI GCNGC 1 cut(s) 692
BlnI CCTAGG 1 cut(s) 797
BlsI GCNGC 1 cut(s) 693
BmcAI AGTACT 2 cut(s) 987, 1041
Bme1390I CCNGG 1 cut(s) 1419
BmeT110I CYCGRG 2 cut(s) 918, 1102
BmiI GGNNCC 4 cut(s) 205, 500, 536, 1240
BmrFI CCNGG 1 cut(s) 1419
BmsI GCATC 2 cut(s) 1141, 1336
BpuEI CTTGAG 1 cut(s) 1547
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 3 cut(s) 350, 797, 1456
BsaWI WCCGGW 2 cut(s) 526, 635
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 356
BseBI CCWGG 1 cut(s) 1419
BseDI CCNNGG 3 cut(s) 350, 797, 1456
BseGI GGATG 2 cut(s) 618, 953
BseLI CCNNNNNNNGG 2 cut(s) 142, 356
BseMII CTCAG 3 cut(s) 110, 336, 747
BseSI GKGCMC 2 cut(s) 208, 1177
BseXI GCAGC 1 cut(s) 678
BsgI GTGCAG 1 cut(s) 1443
BshFI GGCC 6 cut(s) 20, 58, 417, 1080, 1342, 1455
BshNI GGYRCC 3 cut(s) 203, 498, 534
BsiHKAI GWGCWC 1 cut(s) 1177
BsiHKCI CYCGRG 2 cut(s) 918, 1102
BsiSI CCGG 3 cut(s) 491, 527, 636
BslFI GGGAC 2 cut(s) 815, 1049
BslI CCNNNNNNNGG 2 cut(s) 142, 356
BsmAI GTCTC 4 cut(s) 492, 528, 646, 752
BsmFI GGGAC 2 cut(s) 815, 1049
BsmI GAATGC 1 cut(s) 1349
BsnI GGCC 6 cut(s) 20, 58, 417, 1080, 1342, 1455
BsoBI CYCGRG 2 cut(s) 918, 1102
Bsp1286I GDGCHC 3 cut(s) 208, 1177, 1405
BspACI CCGC 3 cut(s) 577, 997, 1242
BspANI GGCC 6 cut(s) 20, 58, 417, 1080, 1342, 1455
BspCNI CTCAG 3 cut(s) 111, 335, 748
BspLI GGNNCC 4 cut(s) 205, 500, 536, 1240
BspMAI CTGCAG 2 cut(s) 705, 779
BspPI GGATC 6 cut(s) 85, 818, 1233, 1246, 1484, 1492
BspT107I GGYRCC 3 cut(s) 203, 498, 534
BssECI CCNNGG 3 cut(s) 350, 797, 1456
BssNI GRCGYC 1 cut(s) 275
BssSI CACGAG 1 cut(s) 249
BssT1I CCWWGG 3 cut(s) 350, 797, 1456
Bst2BI CACGAG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 1419
Bst4CI ACNGT 2 cut(s) 603, 1390
BstACI GRCGYC 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 700
BstC8I GCNNGC 3 cut(s) 415, 1464, 1538
BstDEI CTNAG 5 cut(s) 119, 322, 409, 756, 1436
BstEII GGTNACC 1 cut(s) 613
BstF5I GGATG 2 cut(s) 618, 953
BstMAI GTCTC 4 cut(s) 492, 528, 646, 752
BstMWI GCNNNNNNNGC 4 cut(s) 212, 458, 700, 1077
BstNI CCWGG 1 cut(s) 1419
BstNSI RCATGY 1 cut(s) 1075
BstPI GGTNACC 1 cut(s) 613
BstSCI CCNGG 1 cut(s) 1417
BstSFI CTRYAG 2 cut(s) 701, 775
BstSLI GKGCMC 2 cut(s) 208, 1177
BstV1I GCAGC 1 cut(s) 678
BstX2I RGATCY 4 cut(s) 77, 823, 1238, 1484
BstXI CCANNNNNNTGG 2 cut(s) 316, 948
BstYI RGATCY 4 cut(s) 77, 823, 1238, 1484
BsuRI GGCC 6 cut(s) 20, 58, 417, 1080, 1342, 1455
BtgZI GCGATG 1 cut(s) 577
BtsCI GGATG 2 cut(s) 618, 953
Cac8I GCNNGC 3 cut(s) 415, 1464, 1538
CseI GACGC 1 cut(s) 204
Csp6I GTAC 4 cut(s) 903, 986, 1040, 1215
CviAII CATG 6 cut(s) 107, 295, 787, 963, 1072, 1199
CviQI GTAC 4 cut(s) 903, 986, 1040, 1215
DdeI CTNAG 5 cut(s) 119, 322, 409, 756, 1436
DraI TTTAAA 1 cut(s) 1116
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 5 cut(s) 18, 56, 1078, 1340, 1453
Eco130I CCWWGG 3 cut(s) 350, 797, 1456
Eco24I GRGCYC 1 cut(s) 1405
Eco32I GATATC 1 cut(s) 1093
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 2 cut(s) 918, 1102
Eco91I GGTNACC 1 cut(s) 613
EcoO65I GGTNACC 1 cut(s) 613
EcoRII CCWGG 1 cut(s) 1417
EcoRV GATATC 1 cut(s) 1093
EcoT14I CCWWGG 3 cut(s) 350, 797, 1456
EcoT22I ATGCAT 2 cut(s) 964, 1351
EcoT38I GRGCYC 1 cut(s) 1405
ErhI CCWWGG 3 cut(s) 350, 797, 1456
FaeI CATG 6 cut(s) 110, 298, 790, 966, 1075, 1202
FalI AAGNNNNNCTT 2 cut(s) 1277, 1309
FaqI GGGAC 2 cut(s) 815, 1049
FatI CATG 6 cut(s) 106, 294, 786, 962, 1071, 1198
FauNDI CATATG 1 cut(s) 1060
FbaI TGATCA 3 cut(s) 676, 1195, 1296
Fnu4HI GCNGC 1 cut(s) 692
FokI GGATG 2 cut(s) 605, 960
FriOI GRGCYC 1 cut(s) 1405
Fsp4HI GCNGC 1 cut(s) 692
FspBI CTAG 3 cut(s) 762, 798, 1037
GluI GCNGC 1 cut(s) 692
HaeIII GGCC 6 cut(s) 20, 58, 417, 1080, 1342, 1455
HapII CCGG 3 cut(s) 491, 527, 636
HgaI GACGC 1 cut(s) 204
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 6 cut(s) 110, 298, 790, 966, 1075, 1202
HincII GTYRAC 2 cut(s) 279, 1393
HindII GTYRAC 2 cut(s) 279, 1393
HindIII AAGCTT 2 cut(s) 178, 876
HinfI GANTC 9 cut(s) 132, 159, 320, 396, 639, 780, 932, 1277, 1336
HpaII CCGG 3 cut(s) 491, 527, 636
HphI GGTGA 7 cut(s) 277, 541, 607, 625, 661, 739, 775
Hpy166II GTNNAC 4 cut(s) 279, 749, 1175, 1393
Hpy188III TCNNGA 7 cut(s) 393, 715, 920, 1253, 1294, 1316, 1526
Hpy8I GTNNAC 4 cut(s) 279, 749, 1175, 1393
Hpy99I CGWCG 2 cut(s) 220, 277
HpyAV CCTTC 3 cut(s) 354, 839, 1279
HpyCH4III ACNGT 2 cut(s) 603, 1390
HpyCH4IV ACGT 2 cut(s) 275, 1217
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 458, 700, 1077
HpyF3I CTNAG 5 cut(s) 119, 322, 409, 756, 1436
HpySE526I ACGT 2 cut(s) 275, 1217
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 6 cut(s) 110, 298, 790, 966, 1075, 1202
Ksp22I TGATCA 3 cut(s) 676, 1195, 1296
LmnI GCTCC 2 cut(s) 115, 556
Lsp1109I GCAGC 1 cut(s) 678
LweI GCATC 2 cut(s) 1141, 1336
MaeI CTAG 3 cut(s) 762, 798, 1037
MaeII ACGT 2 cut(s) 275, 1217
MaeIII GTNAC 6 cut(s) 265, 304, 613, 781, 1316, 1501
MboII GAAGA 1 cut(s) 175
MfeI CAATTG 1 cut(s) 661
MflI RGATCY 4 cut(s) 77, 823, 1238, 1484
MhlI GDGCHC 3 cut(s) 208, 1177, 1405
MlsI TGGCCA 1 cut(s) 1455
MluCI AATT 6 cut(s) 327, 661, 791, 1179, 1311, 1473
MluNI TGGCCA 1 cut(s) 1455
MlyI GAGTC 6 cut(s) 168, 314, 405, 648, 789, 1286
MmeI TCCRAC 1 cut(s) 93
Mox20I TGGCCA 1 cut(s) 1455
Mph1103I ATGCAT 2 cut(s) 964, 1351
MscI TGGCCA 1 cut(s) 1455
MseI TTAA 7 cut(s) 365, 864, 975, 1115, 1230, 1365, 1374
Msp20I TGGCCA 1 cut(s) 1455
MspA1I CMGCKG 1 cut(s) 999
MspI CCGG 3 cut(s) 491, 527, 636
MspR9I CCNGG 1 cut(s) 1419
MunI CAATTG 1 cut(s) 661
Mva1269I GAATGC 1 cut(s) 1349
MvaI CCWGG 1 cut(s) 1419
MwoI GCNNNNNNNGC 4 cut(s) 212, 458, 700, 1077
NdeI CATATG 1 cut(s) 1060
NlaIII CATG 6 cut(s) 110, 298, 790, 966, 1075, 1202
NlaIV GGNNCC 4 cut(s) 205, 500, 536, 1240
NmuCI GTSAC 5 cut(s) 265, 304, 613, 781, 1316
NsiI ATGCAT 2 cut(s) 964, 1351
NspI RCATGY 1 cut(s) 1075
PctI GAATGC 1 cut(s) 1349
PfeI GAWTC 3 cut(s) 132, 932, 1336
PkrI GCNGC 1 cut(s) 693
PleI GAGTC 6 cut(s) 167, 314, 404, 647, 788, 1285
PpsI GAGTC 6 cut(s) 167, 314, 404, 647, 788, 1285
PshBI ATTAAT 1 cut(s) 975
PsiI TTATAA 1 cut(s) 1472
Psp6I CCWGG 1 cut(s) 1417
PspEI GGTNACC 1 cut(s) 613
PspGI CCWGG 1 cut(s) 1417
PspN4I GGNNCC 4 cut(s) 205, 500, 536, 1240
PstI CTGCAG 2 cut(s) 705, 779
PsuI RGATCY 4 cut(s) 77, 823, 1238, 1484
RsaI GTAC 4 cut(s) 904, 987, 1041, 1216
RsaNI GTAC 4 cut(s) 903, 986, 1040, 1215
SaqAI TTAA 7 cut(s) 365, 864, 975, 1115, 1230, 1365, 1374
SatI GCNGC 1 cut(s) 692
ScaI AGTACT 2 cut(s) 987, 1041
SchI GAGTC 6 cut(s) 168, 314, 405, 648, 789, 1286
ScrFI CCNGG 1 cut(s) 1419
SduI GDGCHC 3 cut(s) 208, 1177, 1405
SfaNI GCATC 2 cut(s) 1141, 1336
SfcI CTRYAG 2 cut(s) 701, 775
SmlI CTYRAG 1 cut(s) 1526
SmoI CTYRAG 1 cut(s) 1526
SpeI ACTAGT 1 cut(s) 761
Sse9I AATT 6 cut(s) 327, 661, 791, 1179, 1311, 1473
SsiI CCGC 3 cut(s) 577, 997, 1242
SspI AATATT 1 cut(s) 1411
SspMI CTAG 3 cut(s) 762, 798, 1037
StyD4I CCNGG 1 cut(s) 1417
StyI CCWWGG 3 cut(s) 350, 797, 1456
TaaI ACNGT 2 cut(s) 603, 1390
TaiI ACGT 2 cut(s) 278, 1220
TaqI TCGA 2 cut(s) 162, 426
TasI AATT 6 cut(s) 327, 661, 791, 1179, 1311, 1473
TatI WGTACW 2 cut(s) 985, 1039
TfiI GAWTC 3 cut(s) 132, 932, 1336
Tru1I TTAA 7 cut(s) 365, 864, 975, 1115, 1230, 1365, 1374
Tru9I TTAA 7 cut(s) 365, 864, 975, 1115, 1230, 1365, 1374
TseFI GTSAC 5 cut(s) 265, 304, 613, 781, 1316
TseI GCWGC 1 cut(s) 691
Tsp45I GTSAC 5 cut(s) 265, 304, 613, 781, 1316
TspDTI ATGAA 9 cut(s) 39, 77, 283, 447, 581, 803, 916, 1340, 1539
VneI GTGCAC 1 cut(s) 1173
VspI ATTAAT 1 cut(s) 975
XapI RAATTY 1 cut(s) 791
XceI RCATGY 1 cut(s) 1075
XcmI CCANNNNNNNNNTGG 2 cut(s) 292, 679
XmaJI CCTAGG 1 cut(s) 797
XspI CTAG 3 cut(s) 762, 798, 1037
ZraI GACGTC 1 cut(s) 276
ZrmI AGTACT 2 cut(s) 987, 1041
Zsp2I ATGCAT 2 cut(s) 964, 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.