Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Forward (+)

12791081 .. 12793669

Gene Structure 2589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001245

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAAGCTGTTGTGGTTAGCGTTCGTCATCGCTTTACTGTTTGGATTGGTCGCTATCCTCATCTACATCACCAGAGTCTCCGATCTCTATGAGATCAATCGGCTCACCGATGATGATTTGGAAGCACTGCAAAATCTGCAGAGCCATTTCCAGAAATGTGTGGCTGCGAATGGATTAGGTTTACAAGCTGAGACTAGTAAAGATTACTGCGGAGTCACCATGAAATTTCCTAGTGACACCATTCCTAAATGGAAAGATCCCAAAACCAATGAACTTGAAGGTTTATCTTATGAGTTTAATCTATGTGAAGCTGTGGCTACTTGGGAACAGGTGCAGAATAGTACCACCATTCTCACTCGGGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCATGGCTTAGGATTAATAAAGGAGTACTACTTGACCGCTGTAAGAATAAAACTTTGTGTGTGGAGAAACTTTCTCTGGTACTCCCTTTCACACCACCATATGTCCCTCGCATGTTTGGCCGTTGTGCTGTTATCGGAAACTCGGTCAATCTTTTAAAAACAAAGTTTGGGAGAGAGATAGATGGCTATGATGCAGTTGTTAGAGAAAATGGTGCACCAATTCAGAACTATATTGATCATGTGGGCAAGAAATGCATGTTTCGGCTTCTTAATAGAGGATCCGCTAAAGCTCTTGATAAAGTTGTGGAGTTAGATGAGTCCAGGAAGGAGGTCTTAATCATCAAAACAACAATTCATGACACTATGAACAAGATGATTCGGCCAGATGCATTCCTTTGTTTCGTTAATGATGTTAAAGTCAGTAATACAGTTGACCAAAGGGCTCGTAATATTATTCCTGGTGCAGAGGTGGATCTGGTAAGCATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

297

Amino Acids

33.5

Weight (kDa)

6.35

Isoelectric Point (pI)

25.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_29	PF00777	166 - 249	7.5e-17	Glycosyltransferase family 29 (sialyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	210, 436, 681
AclWI	GGATC	4 cut(s)	251, 672, 685, 879
AcoI	YGGCCR	2 cut(s)	517, 779
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	3 cut(s)	343, 426, 480
AgsI	TTSAA	1 cut(s)	278
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	2 cut(s)	719, 856
AluBI	AGCT	4 cut(s)	7, 188, 311, 689
AluI	AGCT	4 cut(s)	7, 188, 311, 689
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	2 cut(s)	82, 185
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	4 cut(s)	251, 672, 685, 879
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	2 cut(s)	517, 779
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	224
AseI	ATTAAT	1 cut(s)	414
AsuHPI	GGTGA	3 cut(s)	61, 97, 208
AvaI	CYCGRG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	616
BamHI	GGATCC	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	844
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	2 cut(s)	381, 575
BceAI	ACGGC	1 cut(s)	504
BciT130I	CCWGG	2 cut(s)	721, 858
BclI	TGATCA	1 cut(s)	634
BcoDI	GTCTC	2 cut(s)	82, 185
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	2 cut(s)	195, 231
BfmI	CTRYAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmcAI	AGTACT	1 cut(s)	426
Bme1390I	CCNGG	2 cut(s)	721, 858
BmeT110I	CYCGRG	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	679
BmrFI	CCNGG	2 cut(s)	721, 858
BmsI	GCATC	2 cut(s)	580, 775
Bpu10I	CCTNAGC	1 cut(s)	407
BseBI	CCWGG	2 cut(s)	721, 858
BseGI	GGATG	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	180
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	2 cut(s)	353, 882
BshFI	GGCC	2 cut(s)	519, 781
BsiHKAI	GWGCWC	1 cut(s)	616
BsiHKCI	CYCGRG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	488
BsmAI	GTCTC	2 cut(s)	82, 185
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	788
BsnI	GGCC	2 cut(s)	519, 781
BsoBI	CYCGRG	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	616, 844
Bsp143I	GATC	6 cut(s)	82, 93, 256, 634, 677, 871
BspACI	CCGC	3 cut(s)	210, 436, 681
BspANI	GGCC	2 cut(s)	519, 781
BspCNI	CTCAG	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	1 cut(s)	679
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	4 cut(s)	251, 672, 685, 879
BssMI	GATC	6 cut(s)	82, 93, 256, 634, 677, 871
Bst2UI	CCWGG	2 cut(s)	721, 858
Bst4CI	ACNGT	2 cut(s)	39, 829
BstAPI	GCANNNNNTGC	2 cut(s)	136, 651
BstDEI	CTNAG	2 cut(s)	189, 407
BstF5I	GGATG	1 cut(s)	392
BstKTI	GATC	6 cut(s)	85, 96, 259, 637, 680, 874
BstMAI	GTCTC	2 cut(s)	82, 185
BstMBI	GATC	6 cut(s)	82, 93, 256, 634, 677, 871
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 516, 651
BstNI	CCWGG	2 cut(s)	721, 858
BstNSI	RCATGY	2 cut(s)	514, 658
BstSCI	CCNGG	2 cut(s)	719, 856
BstSFI	CTRYAG	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	3 cut(s)	256, 677, 871
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	3 cut(s)	256, 677, 871
BsuRI	GGCC	2 cut(s)	519, 781
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	392
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	125
CciI	TCATGA	1 cut(s)	754
Csp6I	GTAC	3 cut(s)	342, 425, 479
CviAII	CATG	6 cut(s)	220, 402, 511, 638, 655, 755
CviQI	GTAC	3 cut(s)	342, 425, 479
DdeI	CTNAG	2 cut(s)	189, 407
DpnI	GATC	6 cut(s)	84, 95, 258, 636, 679, 873
DpnII	GATC	6 cut(s)	82, 93, 256, 634, 677, 871
DraI	TTTAAA	1 cut(s)	555
EaeI	YGGCCR	2 cut(s)	517, 779
Eco24I	GRGCYC	1 cut(s)	844
Eco88I	CYCGRG	1 cut(s)	357
EcoRII	CCWGG	2 cut(s)	719, 856
EcoT22I	ATGCAT	3 cut(s)	403, 656, 790
EcoT38I	GRGCYC	1 cut(s)	844
FaeI	CATG	6 cut(s)	223, 405, 514, 641, 658, 758
FalI	AAGNNNNNCTT	3 cut(s)	716, 748, 871
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	6 cut(s)	219, 401, 510, 637, 654, 754
FauNDI	CATATG	1 cut(s)	499
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	1 cut(s)	399
FriOI	GRGCYC	1 cut(s)	844
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	195, 231
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	519, 781
Hin1II	CATG	6 cut(s)	223, 405, 514, 641, 658, 758
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HinfI	GANTC	5 cut(s)	75, 213, 371, 716, 775
HphI	GGTGA	3 cut(s)	61, 97, 208
Hpy166II	GTNNAC	3 cut(s)	182, 614, 832
Hpy188I	TCNGA	3 cut(s)	82, 536, 624
Hpy188III	TCNNGA	5 cut(s)	151, 359, 692, 755, 888
Hpy8I	GTNNAC	3 cut(s)	182, 614, 832
HpyAV	CCTTC	2 cut(s)	272, 718
HpyCH4III	ACNGT	2 cut(s)	39, 829
HpyCH4V	TGCA	9 cut(s)	130, 139, 334, 401, 593, 614, 654, 788, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 516, 651
HpyF3I	CTNAG	2 cut(s)	189, 407
Hsp92II	CATG	6 cut(s)	223, 405, 514, 641, 658, 758
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	6 cut(s)	82, 93, 256, 634, 677, 871
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	2 cut(s)	580, 775
MaeI	CTAG	2 cut(s)	195, 231
MaeIII	GTNAC	2 cut(s)	214, 233
MalI	GATC	6 cut(s)	84, 95, 258, 636, 679, 873
MboI	GATC	6 cut(s)	82, 93, 256, 634, 677, 871
MflI	RGATCY	3 cut(s)	256, 677, 871
MhlI	GDGCHC	2 cut(s)	616, 844
MluCI	AATT	3 cut(s)	224, 618, 750
MlyI	GAGTC	3 cut(s)	84, 222, 725
MnlI	CCTC	6 cut(s)	68, 385, 516, 668, 721, 859
Mph1103I	ATGCAT	3 cut(s)	403, 656, 790
MseI	TTAA	7 cut(s)	297, 414, 554, 669, 734, 804, 813
MspA1I	CMGCKG	1 cut(s)	438
MspR9I	CCNGG	2 cut(s)	721, 858
Mva1269I	GAATGC	1 cut(s)	788
MvaI	CCWGG	2 cut(s)	721, 858
MwoI	GCNNNNNNNGC	3 cut(s)	136, 516, 651
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	6 cut(s)	82, 93, 256, 634, 677, 871
NlaIII	CATG	6 cut(s)	223, 405, 514, 641, 658, 758
NlaIV	GGNNCC	1 cut(s)	679
NmuCI	GTSAC	2 cut(s)	214, 233
NsiI	ATGCAT	3 cut(s)	403, 656, 790
NspI	RCATGY	2 cut(s)	514, 658
PagI	TCATGA	1 cut(s)	754
PctI	GAATGC	1 cut(s)	788
PfeI	GAWTC	2 cut(s)	371, 775
PfoI	TCCNGGA	1 cut(s)	719
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	3 cut(s)	83, 221, 724
PpsI	GAGTC	3 cut(s)	83, 221, 724
PshBI	ATTAAT	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	719, 856
PspGI	CCWGG	2 cut(s)	719, 856
PspN4I	GGNNCC	1 cut(s)	679
PstI	CTGCAG	1 cut(s)	141
PsuI	RGATCY	3 cut(s)	256, 677, 871
RsaI	GTAC	3 cut(s)	343, 426, 480
RsaNI	GTAC	3 cut(s)	342, 425, 479
SaqAI	TTAA	7 cut(s)	297, 414, 554, 669, 734, 804, 813
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	6 cut(s)	82, 93, 256, 634, 677, 871
ScaI	AGTACT	1 cut(s)	426
SchI	GAGTC	3 cut(s)	84, 222, 725
ScrFI	CCNGG	2 cut(s)	721, 858
SduI	GDGCHC	2 cut(s)	616, 844
SetI	ASST	9 cut(s)	9, 181, 190, 283, 313, 333, 691, 732, 870
SfaNI	GCATC	2 cut(s)	580, 775
SfcI	CTRYAG	1 cut(s)	137
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	3 cut(s)	224, 618, 750
SsiI	CCGC	3 cut(s)	210, 436, 681
SspI	AATATT	1 cut(s)	850
SspMI	CTAG	2 cut(s)	195, 231
StyD4I	CCNGG	2 cut(s)	719, 856
TaaI	ACNGT	2 cut(s)	39, 829
TaqII	GACCGA	1 cut(s)	532
TasI	AATT	3 cut(s)	224, 618, 750
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	2 cut(s)	371, 775
Tru1I	TTAA	7 cut(s)	297, 414, 554, 669, 734, 804, 813
Tru9I	TTAA	7 cut(s)	297, 414, 554, 669, 734, 804, 813
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	214, 233
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	2 cut(s)	214, 233
TspDTI	ATGAA	6 cut(s)	17, 236, 285, 355, 743, 779
TspRI	CASTG	1 cut(s)	132
VneI	GTGCAC	1 cut(s)	612
VspI	ATTAAT	1 cut(s)	414
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	2 cut(s)	514, 658
XspI	CTAG	2 cut(s)	195, 231
ZrmI	AGTACT	1 cut(s)	426
Zsp2I	ATGCAT	3 cut(s)	403, 656, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.