Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Forward (+)

32745969 .. 32752409

Gene Structure 6441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG196800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGATCTTGAATAAAGATCCCAAAACCAATGAGCTTGAAGGTTTATTGTATGAGTTTAATCTATGCGAAGCTTTGGCTACTTGGGAACAGGTGCGGAATGGTACCACCATACTCACCCAGGAGTTCATTGATTCTTTACCAAATGGATGGGAGGATTATGCATGGCGTAGGAATGTAGGATTAATAAAGGAGTACTACTTGACCACTGTAAGAATAAAACTGTGTGTGGAGAAACTTTCTCTGGTACTCCCTTTCACACCACCATATGTTCCTCGCATCCGGCAAGGAGGTTGGCAGCAAGCAGGTGCGCAGCTGCCTGCAAGGGCTAGGCAGCAAGTTAACGCACAGCTGCCTACAGGCGCTAAGCAGCGAGTAGGGGTGCAGCTGCCTGCGAGTGATTGGCAGCAAGCAAGGGTGCAGCTGGCAGCAAGCAATTGGCAGCAACTTGTGGGCACAAAGCTAGCAGCAGCTTGGCCACAAGTTGGGCAGCAAGTTGGCAACAACTTGGCCACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

172

Amino Acids

19.33

Weight (kDa)

9.23

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	293
Acc16I	TGCGCA	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	293
Acc65I	GGTACC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	482
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	1 cut(s)	11
AcoI	YGGCCR	2 cut(s)	473, 507
AfaI	GTAC	3 cut(s)	103, 194, 246
AfiI	CCNNNNNNNGG	1 cut(s)	482
AgsI	TTSAA	2 cut(s)	10, 38
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	8 cut(s)	34, 71, 313, 349, 385, 421, 460, 470
AluI	AGCT	8 cut(s)	34, 71, 313, 349, 385, 421, 460, 470
AlwI	GGATC	1 cut(s)	11
AoxI	GGCC	2 cut(s)	473, 507
AseI	ATTAAT	1 cut(s)	182
Asp718I	GGTACC	1 cut(s)	101
AspLEI	GCGC	2 cut(s)	310, 362
AsuHPI	GGTGA	1 cut(s)	106
AsuNHI	GCTAGC	1 cut(s)	460
BaeGI	GKGCMC	1 cut(s)	455
BalI	TGGCCA	2 cut(s)	475, 509
BanI	GGYRCC	1 cut(s)	101
BccI	CCATC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	119
BfaI	CTAG	2 cut(s)	327, 461
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	363
BfuAI	ACCTGC	1 cut(s)	293
BlpI	GCTNAGC	1 cut(s)	363
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	285
BmtI	GCTAGC	1 cut(s)	464
Bpu1102I	GCTNAGC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	152, 276
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	455
BsgI	GTGCAG	2 cut(s)	401, 437
BshFI	GGCC	2 cut(s)	475, 509
BshNI	GGYRCC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	482
BsnI	GGCC	2 cut(s)	475, 509
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	2 cut(s)	3, 16
Bsp1720I	GCTNAGC	1 cut(s)	363
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	2 cut(s)	475, 509
BspLI	GGNNCC	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	293
BspOI	GCTAGC	1 cut(s)	464
BspPI	GGATC	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	3, 16
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	208, 222
BstC8I	GCNNGC	7 cut(s)	300, 318, 390, 408, 423, 430, 462
BstDEI	CTNAG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	152, 276
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	310, 362
BstKTI	GATC	2 cut(s)	6, 19
BstMBI	GATC	2 cut(s)	3, 16
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	475, 509
BtsCI	GGATG	2 cut(s)	152, 276
BtsIMutI	CAGTG	1 cut(s)	204
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	7 cut(s)	300, 318, 390, 408, 423, 430, 462
CfoI	GCGC	2 cut(s)	310, 362
Csp6I	GTAC	3 cut(s)	102, 193, 245
CviAII	CATG	1 cut(s)	162
CviQI	GTAC	3 cut(s)	102, 193, 245
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	2 cut(s)	5, 18
DpnII	GATC	2 cut(s)	3, 16
EaeI	YGGCCR	2 cut(s)	473, 507
EcoRII	CCWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	163
FaeI	CATG	1 cut(s)	165
FaiI	YATR	7 cut(s)	51, 64, 110, 159, 163, 265, 267
FatI	CATG	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	265
FokI	GGATG	2 cut(s)	159, 263
FspBI	CTAG	2 cut(s)	327, 461
FspI	TGCGCA	1 cut(s)	309
GlaI	GCGC	2 cut(s)	309, 361
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	475, 509
HapII	CCGG	1 cut(s)	280
HhaI	GCGC	2 cut(s)	310, 362
Hin1II	CATG	1 cut(s)	165
Hin6I	GCGC	2 cut(s)	308, 360
HinP1I	GCGC	2 cut(s)	308, 360
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	1 cut(s)	131
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188III	TCNNGA	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	208, 222
HpyCH4V	TGCA	4 cut(s)	161, 320, 382, 418
HpyF3I	CTNAG	1 cut(s)	363
Hsp92II	CATG	1 cut(s)	165
HspAI	GCGC	2 cut(s)	308, 360
KpnI	GGTACC	1 cut(s)	105
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	3, 16
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	2 cut(s)	327, 461
MalI	GATC	2 cut(s)	5, 18
MboI	GATC	2 cut(s)	3, 16
MfeI	CAATTG	1 cut(s)	433
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	455
MlsI	TGGCCA	2 cut(s)	475, 509
MluCI	AATT	1 cut(s)	433
MluNI	TGGCCA	2 cut(s)	475, 509
MnlI	CCTC	3 cut(s)	145, 281, 282
Mox20I	TGGCCA	2 cut(s)	475, 509
Mph1103I	ATGCAT	1 cut(s)	163
MscI	TGGCCA	2 cut(s)	475, 509
MseI	TTAA	3 cut(s)	57, 182, 339
Msp20I	TGGCCA	2 cut(s)	475, 509
MspA1I	CMGCKG	4 cut(s)	313, 349, 385, 421
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	433
MvaI	CCWGG	1 cut(s)	119
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	2 cut(s)	3, 16
NheI	GCTAGC	1 cut(s)	460
NlaIII	CATG	1 cut(s)	165
NlaIV	GGNNCC	1 cut(s)	103
NsbI	TGCGCA	1 cut(s)	309
NsiI	ATGCAT	1 cut(s)	163
PaqCI	CACCTGC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	131
PflMI	CCANNNNNTGG	1 cut(s)	482
PshBI	ATTAAT	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	16
PvuII	CAGCTG	4 cut(s)	313, 349, 385, 421
RsaI	GTAC	3 cut(s)	103, 194, 246
RsaNI	GTAC	3 cut(s)	102, 193, 245
SaqAI	TTAA	3 cut(s)	57, 182, 339
Sau3AI	GATC	2 cut(s)	3, 16
ScaI	AGTACT	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	455
SfaNI	GCATC	1 cut(s)	285
SfcI	CTRYAG	1 cut(s)	354
Sse9I	AATT	1 cut(s)	433
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	2 cut(s)	327, 461
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	208, 222
TasI	AATT	1 cut(s)	433
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	3 cut(s)	57, 182, 339
Tru9I	TTAA	3 cut(s)	57, 182, 339
TscAI	CASTG	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	482
VspI	ATTAAT	1 cut(s)	182
XspI	CTAG	2 cut(s)	327, 461
ZrmI	AGTACT	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.