Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003936.1

Orthogroup ID

OG0002730

Physical Location & Seq

Genomic Coordinates Reverse (-)

48417 .. 48789

Gene Structure 373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003936.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgtttggccgttgtgctgttatcggaaactcgggcgatcttttaaaaacaaagtttgggagagagatagatggctatgatgcagttgttagagaaaatggtgcaccaattcagaactatactgatcatgtgggcaagaaatgtacgtttcggcttcttaatagaggatccgctaaagctcttgataaagttgtggagttagatggtataagaactggtccatttttttatagatatggcatttttattacaagagcgctaagtatagacaaattttgcaaagtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003836 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005795 GO:0005802 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006643 GO:0006664 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009311 GO:0009312 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0030154 GO:0030258 GO:0030259 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032580 GO:0032989 GO:0034645 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046467 GO:0047288 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070085 GO:0071704 GO:0071840 GO:0097503 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509 GO:1990743

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

95

Amino Acids

10.62

Weight (kDa)

9.47

Isoelectric Point (pI)

8.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48820 AT3G48820
fragaria_vesca	FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130 FvH4_5g09130
malus_domestica	MD06G1133300.v1.1 MD14G1149700.v1.1
prunus_persica	Prupe.5G144500_v2.0.a1 Prupe.5G144500_v2.0.a1
pyrus_communis	pycom06g12490 pycom14g12430 pycom14g12440
rosa_chinensis	RchiOBHm_Chr3g0492771 RchiOBHm_Chr7g0189061
rosa_laevigata	RLG00000001245 RLG00000004636 RLG00000007581 RLG00000009531 RLG00000015525 RLG00000020308 RLG00000033372
rosa_multiflora	Rmu_sc0000744.1_g000102 Rmu_sc0003936.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031120 Rroxscaffold_3G00265820
rosa_rugosa	Rorug01G0451300 Rorug05G0288200 Rorug06G0495900
rosa_samantha	Rh1DG169100 Rh3AG306400 Rh6CG196800 Rh7AG100300 Rh7BG102800 Rh7CG104300 Rh7DG102300
rosa_wichuraiana	Rw1G004670 Rw7G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	2 cut(s)	162, 175
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	1 cut(s)	145
AfeI	AGCGCT	1 cut(s)	258
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw21I	GWGCWC	1 cut(s)	106
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	2 cut(s)	162, 175
Ama87I	CYCGRG	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	258
AoxI	GGCC	1 cut(s)	7
ApaLI	GTGCAC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	106
BamHI	GGATCC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	106
BccI	CCATC	2 cut(s)	65, 197
BclI	TGATCA	1 cut(s)	124
BfaI	CTAG	1 cut(s)	286
BfoI	RGCGCY	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	218
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	169
BmsI	GCATC	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	220
BseSI	GKGCMC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	31
BsnI	GGCC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	3 cut(s)	37, 124, 167
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	2 cut(s)	162, 175
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	37, 124, 167
BstDEI	CTNAG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	3 cut(s)	40, 127, 170
BstMBI	GATC	3 cut(s)	37, 124, 167
BstSLI	GKGCMC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	4 cut(s)	9, 75, 154, 179
CviKI_1	RGCY	4 cut(s)	9, 75, 154, 179
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	3 cut(s)	39, 126, 169
DpnII	GATC	3 cut(s)	37, 124, 167
DraI	TTTAAA	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	218
Eco47III	AGCGCT	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	31
FaeI	CATG	1 cut(s)	131
FaiI	YATR	7 cut(s)	78, 120, 129, 209, 231, 237, 266
FatI	CATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	124
FspBI	CTAG	1 cut(s)	286
GlaI	GCGC	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	9
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	26, 114
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	83, 104, 279
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	37, 124, 167
LpnPI	CCDG	1 cut(s)	201
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	286
MaeII	ACGT	1 cut(s)	146
MalI	GATC	3 cut(s)	39, 126, 169
MboI	GATC	3 cut(s)	37, 124, 167
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	2 cut(s)	108, 272
MnlI	CCTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	44, 159
NdeII	GATC	3 cut(s)	37, 124, 167
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	44, 159
Sau3AI	GATC	3 cut(s)	37, 124, 167
Sau96I	GGNCC	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	2 cut(s)	149, 181
SfaNI	GCATC	1 cut(s)	70
SgeI	CNNG	7 cut(s)	43, 45, 140, 148, 194, 228, 264
SinI	GGWCC	1 cut(s)	218
Sse9I	AATT	2 cut(s)	108, 272
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	1 cut(s)	286
TaiI	ACGT	1 cut(s)	149
TasI	AATT	2 cut(s)	108, 272
Tru1I	TTAA	2 cut(s)	44, 159
Tru9I	TTAA	2 cut(s)	44, 159
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	272
XspI	CTAG	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.