Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001433

Physical Location & Seq

Genomic Coordinates Forward (+)

20858742 .. 20860537

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTTTCGAGAGAACACAAGAGAGGTTCCTCTCTGCGTGAGAAGTTTCATTTGCTTCGTTCAATCACTGATTCTCATGCTGAGAGCGAAACATCTATCATAGTGGATGCATCAAAATATATCAAAAAGCTTAAGCAGAAGGTAGAAAAAATCAACAATGCGACCACGTCTGAGCAATCTTTCCGTGAATCTTCCGATCCAAATCCTATGGTTACAGTGGAAACCCTAGAGAAGGGGTTCATGATAAAGGTAATGTCAAGGAAGAATGAGGCAGGCATGTTGGTTTGTGTTCTTGAAACCTTTGAAGATCTTGGACTTGATGTTGTTGAAGCTAGGGTTTCATGTACTGACACATTTAGCTTGCATGCCATTGGTTCATCAAATAATGATGATGGAGACTGCATAGATGCTGAAGCAGTGAAACAGGCAGTGGCAGAAGCAATAAGGACCTGGAGTGATAGCCATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.31

Weight (kDa)

5.39

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-TF_ACT-like_plant	PF22754	70 - 126	6.7e-17	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40435 AT2G40435 AT2G40435 AT3G56220 AT3G56220
fragaria_vesca	FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_7g25520 FvH4_7g25520 FvH4_7g25520
malus_domestica	MD01G1161700.v1.1 MD04G1170700.v1.1 MD07G1229700.v1.1 MD12G1184400.v1.1
prunus_persica	Prupe.2G259900_v2.0.a1 Prupe.6G289300_v2.0.a1 Prupe.6G289300_v2.0.a1
pyrus_communis	pycom04g15110 pycom07g20770 pycom12g17320
rosa_chinensis	RchiOBHm_Chr1g0371511 RchiOBHm_Chr3g0461381
rosa_laevigata	RLG00000024935 RLG00000026955
rosa_multiflora	Rmu_sc0000809.1_g000017 Rmu_sc0002677.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285620 Rroxscaffold_6G00418340 Rroxscaffold_6G00418640
rosa_rugosa	Rorug01G0364500 Rorug01G0364600 Rorug01G0364700 Rorug01G0364800.1 Rorug03G0049700 Rorug03G0049700 Rorug03G0049800 Rorug03G0049900 Rorug03G0050000 Rorug03G0050100
rosa_samantha	Rh1AG374800 Rh1BG338200 Rh1CG351500 Rh1DG369200 Rh3AG108000 Rh3BG112100 Rh3CG113800 Rh3DG113700
rosa_wichuraiana	Rw1G032970 Rw3G009210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	63, 296, 305, 329
AjiI	CACGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	449
AluBI	AGCT	3 cut(s)	130, 332, 360
AluI	AGCT	3 cut(s)	130, 332, 360
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	447
BccI	CCATC	1 cut(s)	386
BciT130I	CCWGG	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	2 cut(s)	227, 333
BfrI	CTTAAG	1 cut(s)	131
BglII	AGATCT	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	451
Bme18I	GGWCC	1 cut(s)	447
BmgBI	CACGTC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	451
BmsI	GCATC	3 cut(s)	97, 119, 397
BsaBI	GATNNNNATC	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	451
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	72, 162
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	196, 307
BspCNI	CTCAG	2 cut(s)	73, 163
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	191
BspTI	CTTAAG	1 cut(s)	131
BssMI	GATC	2 cut(s)	196, 307
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	1 cut(s)	217
BstAFI	CTTAAG	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	274, 362, 366
BstDEI	CTNAG	2 cut(s)	81, 171
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	199, 310
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	2 cut(s)	196, 307
BstNI	CCWGG	1 cut(s)	451
BstNSI	RCATGY	2 cut(s)	280, 368
BstSCI	CCNGG	1 cut(s)	449
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BtrI	CACGTC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	2 cut(s)	423, 435
BtsIMutI	CAGTG	4 cut(s)	66, 222, 423, 435
Cac8I	GCNNGC	3 cut(s)	274, 362, 366
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	7 cut(s)	77, 241, 277, 342, 365, 464, 468
CviJI	RGCY	4 cut(s)	130, 332, 360, 462
CviKI_1	RGCY	4 cut(s)	130, 332, 360, 462
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	2 cut(s)	81, 171
DpnI	GATC	2 cut(s)	198, 309
DpnII	GATC	2 cut(s)	196, 307
Eco47I	GGWCC	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	432
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	449
EcoT22I	ATGCAT	2 cut(s)	112, 469
FaeI	CATG	7 cut(s)	80, 244, 280, 345, 368, 467, 471
FatI	CATG	7 cut(s)	76, 240, 276, 341, 364, 463, 467
FokI	GGATG	1 cut(s)	119
FspBI	CTAG	2 cut(s)	227, 333
Hin1II	CATG	7 cut(s)	80, 244, 280, 345, 368, 467, 471
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	2 cut(s)	71, 188
Hpy188I	TCNGA	2 cut(s)	172, 196
Hpy188III	TCNNGA	3 cut(s)	9, 241, 293
HpyAV	CCTTC	2 cut(s)	133, 226
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	4 cut(s)	110, 364, 402, 467
HpyF3I	CTNAG	2 cut(s)	81, 171
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	7 cut(s)	80, 244, 280, 345, 368, 467, 471
Kzo9I	GATC	2 cut(s)	196, 307
LpnPI	CCDG	4 cut(s)	258, 410, 436, 463
LweI	GCATC	3 cut(s)	97, 119, 397
MaeI	CTAG	2 cut(s)	227, 333
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	198, 309
MboI	GATC	2 cut(s)	196, 307
MboII	GAAGA	3 cut(s)	183, 274, 317
MflI	RGATCY	1 cut(s)	307
MnlI	CCTC	3 cut(s)	17, 40, 262
Mph1103I	ATGCAT	2 cut(s)	112, 469
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	1 cut(s)	132
MspCI	CTTAAG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	451
NdeII	GATC	2 cut(s)	196, 307
NlaIII	CATG	7 cut(s)	80, 244, 280, 345, 368, 467, 471
NlaIV	GGNNCC	1 cut(s)	28
NsiI	ATGCAT	2 cut(s)	112, 469
NspI	RCATGY	2 cut(s)	280, 368
PaeI	GCATGC	1 cut(s)	368
PagI	TCATGA	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	71, 188
PflFI	GACNNNGTC	1 cut(s)	166
PpuMI	RGGWCCY	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	447
PspPPI	RGGWCCY	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	307
PsyI	GACNNNGTC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	196, 307
Sau96I	GGNCC	1 cut(s)	447
ScrFI	CCNGG	1 cut(s)	451
SetI	ASST	9 cut(s)	28, 132, 144, 170, 252, 302, 334, 362, 452
SfaNI	GCATC	3 cut(s)	97, 119, 397
SinI	GGWCC	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SphI	GCATGC	1 cut(s)	368
SspMI	CTAG	2 cut(s)	227, 333
StyD4I	CCNGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	8
TatI	WGTACW	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	71, 188
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	4 cut(s)	73, 222, 423, 435
TspDTI	ATGAA	4 cut(s)	38, 229, 330, 366
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	4 cut(s)	73, 222, 423, 435
Tth111I	GACNNNGTC	1 cut(s)	166
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	447
XagI	CCTNNNNNAGG	1 cut(s)	230
XceI	RCATGY	2 cut(s)	280, 368
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	2 cut(s)	227, 333
Zsp2I	ATGCAT	2 cut(s)	112, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.