Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 189, 1239 |
| Acc16I | TGCGCA | 1 cut(s) | 27 |
| AccI | GTMKAC | 1 cut(s) | 678 |
| AccII | CGCG | 2 cut(s) | 1311, 1427 |
| AciI | CCGC | 4 cut(s) | 649, 1060, 1309, 1427 |
| AcsI | RAATTY | 3 cut(s) | 344, 1150, 1441 |
| AcuI | CTGAAG | 1 cut(s) | 564 |
| AfaI | GTAC | 2 cut(s) | 316, 538 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 61, 222 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 605, 637 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 635, 667 |
| AluBI | AGCT | 4 cut(s) | 340, 501, 646, 1182 |
| AluI | AGCT | 4 cut(s) | 340, 501, 646, 1182 |
| Alw21I | GWGCWC | 3 cut(s) | 387, 724, 927 |
| Alw26I | GTCTC | 2 cut(s) | 314, 591 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 646 |
| Ama87I | CYCGRG | 1 cut(s) | 710 |
| AoxI | GGCC | 3 cut(s) | 213, 1061, 1431 |
| ApeKI | GCWGC | 3 cut(s) | 112, 646, 734 |
| ApoI | RAATTY | 3 cut(s) | 344, 1150, 1441 |
| AspLEI | GCGC | 4 cut(s) | 28, 117, 940, 1161 |
| AspS9I | GGNCC | 1 cut(s) | 214 |
| AsuC2I | CCSGG | 1 cut(s) | 1365 |
| AsuHPI | GGTGA | 2 cut(s) | 506, 1382 |
| AvaI | CYCGRG | 1 cut(s) | 710 |
| BauI | CACGAG | 1 cut(s) | 1220 |
| BbsI | GAAGAC | 1 cut(s) | 1208 |
| Bbv12I | GWGCWC | 3 cut(s) | 387, 724, 927 |
| BbvI | GCAGC | 3 cut(s) | 124, 633, 746 |
| BccI | CCATC | 4 cut(s) | 439, 1063, 1238, 1442 |
| BcnI | CCSGG | 1 cut(s) | 1365 |
| BcoDI | GTCTC | 2 cut(s) | 314, 591 |
| BfmI | CTRYAG | 1 cut(s) | 110 |
| BfoI | RGCGCY | 1 cut(s) | 941 |
| BisI | GCNGC | 4 cut(s) | 113, 647, 735, 1061 |
| BlsI | GCNGC | 4 cut(s) | 114, 648, 736, 1062 |
| BmcAI | AGTACT | 1 cut(s) | 538 |
| Bme1390I | CCNGG | 1 cut(s) | 1365 |
| BmeT110I | CYCGRG | 1 cut(s) | 710 |
| BmgT120I | GGNCC | 1 cut(s) | 214 |
| BmrFI | CCNGG | 1 cut(s) | 1365 |
| BmrI | ACTGGG | 1 cut(s) | 1092 |
| BmsI | GCATC | 3 cut(s) | 574, 694, 1111 |
| BmuI | ACTGGG | 1 cut(s) | 1092 |
| BpiI | GAAGAC | 1 cut(s) | 1208 |
| BpmI | CTGGAG | 1 cut(s) | 1016 |
| Bpu10I | CCTNAGC | 1 cut(s) | 909 |
| BpuEI | CTTGAG | 1 cut(s) | 926 |
| BpuMI | CCSGG | 1 cut(s) | 1365 |
| BsaBI | GATNNNNATC | 2 cut(s) | 360, 1248 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 307, 337, 635, 665, 711, 741 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 61, 222 |
| Bse1I | ACTGG | 3 cut(s) | 279, 334, 1087 |
| Bse3DI | GCAATG | 1 cut(s) | 891 |
| Bse8I | GATNNNNATC | 2 cut(s) | 360, 1248 |
| BseGI | GGATG | 4 cut(s) | 10, 283, 306, 450 |
| BseJI | GATNNNNATC | 2 cut(s) | 360, 1248 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 61, 222 |
| BseMI | GCAATG | 1 cut(s) | 891 |
| BseMII | CTCAG | 3 cut(s) | 686, 923, 1422 |
| BseNI | ACTGG | 3 cut(s) | 279, 334, 1087 |
| BseRI | GAGGAG | 1 cut(s) | 1194 |
| BseXI | GCAGC | 3 cut(s) | 124, 633, 746 |
| Bsh1236I | CGCG | 2 cut(s) | 1311, 1427 |
| BshFI | GGCC | 3 cut(s) | 215, 1063, 1433 |
| BsiHKAI | GWGCWC | 3 cut(s) | 387, 724, 927 |
| BsiHKCI | CYCGRG | 1 cut(s) | 710 |
| BsiSI | CCGG | 1 cut(s) | 1365 |
| BslFI | GGGAC | 1 cut(s) | 842 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 61, 222 |
| BsmAI | GTCTC | 2 cut(s) | 314, 591 |
| BsmFI | GGGAC | 1 cut(s) | 842 |
| BsmI | GAATGC | 1 cut(s) | 439 |
| BsnI | GGCC | 3 cut(s) | 215, 1063, 1433 |
| BsoBI | CYCGRG | 1 cut(s) | 710 |
| Bsp1286I | GDGCHC | 3 cut(s) | 387, 724, 927 |
| Bsp1407I | TGTACA | 1 cut(s) | 314 |
| Bsp143I | GATC | 3 cut(s) | 43, 136, 915 |
| BspACI | CCGC | 4 cut(s) | 649, 1060, 1309, 1427 |
| BspANI | GGCC | 3 cut(s) | 215, 1063, 1433 |
| BspCNI | CTCAG | 3 cut(s) | 687, 922, 1421 |
| BspFNI | CGCG | 2 cut(s) | 1311, 1427 |
| BspHI | TCATGA | 1 cut(s) | 568 |
| BspMAI | CTGCAG | 1 cut(s) | 114 |
| BsrDI | GCAATG | 1 cut(s) | 891 |
| BsrGI | TGTACA | 1 cut(s) | 314 |
| BsrI | ACTGG | 3 cut(s) | 279, 334, 1087 |
| BssMI | GATC | 3 cut(s) | 43, 136, 915 |
| BssNAI | GTATAC | 1 cut(s) | 679 |
| BssSI | CACGAG | 1 cut(s) | 1220 |
| Bst1107I | GTATAC | 1 cut(s) | 679 |
| Bst2BI | CACGAG | 1 cut(s) | 1220 |
| Bst4CI | ACNGT | 3 cut(s) | 536, 676, 705 |
| Bst6I | CTCTTC | 1 cut(s) | 927 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 691 |
| BstAUI | TGTACA | 1 cut(s) | 314 |
| BstC8I | GCNNGC | 1 cut(s) | 255 |
| BstDEI | CTNAG | 5 cut(s) | 196, 299, 695, 909, 1408 |
| BstF5I | GGATG | 4 cut(s) | 10, 283, 306, 450 |
| BstFNI | CGCG | 2 cut(s) | 1311, 1427 |
| BstH2I | RGCGCY | 1 cut(s) | 941 |
| BstHHI | GCGC | 4 cut(s) | 28, 117, 940, 1161 |
| BstKTI | GATC | 3 cut(s) | 46, 139, 918 |
| BstMAI | GTCTC | 2 cut(s) | 314, 591 |
| BstMBI | GATC | 3 cut(s) | 43, 136, 915 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 691 |
| BstSCI | CCNGG | 1 cut(s) | 1363 |
| BstSFI | CTRYAG | 1 cut(s) | 110 |
| BstUI | CGCG | 2 cut(s) | 1311, 1427 |
| BstV1I | GCAGC | 3 cut(s) | 124, 633, 746 |
| BstV2I | GAAGAC | 1 cut(s) | 1208 |
| BstZ17I | GTATAC | 1 cut(s) | 679 |
| BsuRI | GGCC | 3 cut(s) | 215, 1063, 1433 |
| BtsCI | GGATG | 4 cut(s) | 10, 283, 306, 450 |
| BtsIMutI | CAGTG | 1 cut(s) | 672 |
| Cac8I | GCNNGC | 1 cut(s) | 255 |
| CaiI | CAGNNNCTG | 1 cut(s) | 646 |
| CciI | TCATGA | 1 cut(s) | 568 |
| CfoI | GCGC | 4 cut(s) | 28, 117, 940, 1161 |
| Cfr13I | GGNCC | 1 cut(s) | 214 |
| CseI | GACGC | 1 cut(s) | 1433 |
| Csp6I | GTAC | 2 cut(s) | 315, 537 |
| CviAII | CATG | 8 cut(s) | 13, 422, 569, 662, 1106, 1162, 1328, 1338 |
| CviQI | GTAC | 2 cut(s) | 315, 537 |
| DdeI | CTNAG | 5 cut(s) | 196, 299, 695, 909, 1408 |
| DpnI | GATC | 3 cut(s) | 45, 138, 917 |
| DpnII | GATC | 3 cut(s) | 43, 136, 915 |
| DraI | TTTAAA | 1 cut(s) | 373 |
| Eam1104I | CTCTTC | 1 cut(s) | 927 |
| EarI | CTCTTC | 1 cut(s) | 927 |
| Eco32I | GATATC | 2 cut(s) | 958, 1250 |
| Eco57I | CTGAAG | 1 cut(s) | 564 |
| Eco88I | CYCGRG | 1 cut(s) | 710 |
| EcoRI | GAATTC | 2 cut(s) | 344, 1150 |
| EcoRV | GATATC | 2 cut(s) | 958, 1250 |
| EcoT22I | ATGCAT | 1 cut(s) | 567 |
| FaeI | CATG | 8 cut(s) | 16, 425, 572, 665, 1109, 1165, 1331, 1341 |
| FaqI | GGGAC | 1 cut(s) | 842 |
| FatI | CATG | 8 cut(s) | 12, 421, 568, 661, 1105, 1161, 1327, 1337 |
| FblI | GTMKAC | 1 cut(s) | 678 |
| Fnu4HI | GCNGC | 4 cut(s) | 113, 647, 735, 1061 |
| FokI | GGATG | 4 cut(s) | 17, 290, 293, 457 |
| Fsp4HI | GCNGC | 4 cut(s) | 113, 647, 735, 1061 |
| FspI | TGCGCA | 1 cut(s) | 27 |
| GlaI | GCGC | 4 cut(s) | 27, 116, 939, 1160 |
| GluI | GCNGC | 4 cut(s) | 113, 647, 735, 1061 |
| GsuI | CTGGAG | 1 cut(s) | 1016 |
| HaeII | RGCGCY | 1 cut(s) | 941 |
| HaeIII | GGCC | 3 cut(s) | 215, 1063, 1433 |
| HapII | CCGG | 1 cut(s) | 1365 |
| HgaI | GACGC | 1 cut(s) | 1433 |
| HhaI | GCGC | 4 cut(s) | 28, 117, 940, 1161 |
| Hin1II | CATG | 8 cut(s) | 16, 425, 572, 665, 1109, 1165, 1331, 1341 |
| Hin6I | GCGC | 4 cut(s) | 26, 115, 938, 1159 |
| HinP1I | GCGC | 4 cut(s) | 26, 115, 938, 1159 |
| HindIII | AAGCTT | 2 cut(s) | 338, 1180 |
| HinfI | GANTC | 6 cut(s) | 322, 333, 356, 377, 861, 892 |
| HpaII | CCGG | 1 cut(s) | 1365 |
| HphI | GGTGA | 2 cut(s) | 506, 1382 |
| Hpy166II | GTNNAC | 3 cut(s) | 679, 1274, 1344 |
| Hpy188I | TCNGA | 4 cut(s) | 261, 951, 1068, 1411 |
| Hpy8I | GTNNAC | 3 cut(s) | 679, 1274, 1344 |
| HpyAV | CCTTC | 5 cut(s) | 63, 194, 200, 275, 622 |
| HpyCH4III | ACNGT | 3 cut(s) | 536, 676, 705 |
| HpyCH4V | TGCA | 8 cut(s) | 112, 182, 437, 565, 579, 824, 884, 1387 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 691 |
| HpyF3I | CTNAG | 5 cut(s) | 196, 299, 695, 909, 1408 |
| Hsp92II | CATG | 8 cut(s) | 16, 425, 572, 665, 1109, 1165, 1331, 1341 |
| HspAI | GCGC | 4 cut(s) | 26, 115, 938, 1159 |
| Kzo9I | GATC | 3 cut(s) | 43, 136, 915 |
| LmnI | GCTCC | 2 cut(s) | 643, 719 |
| Lsp1109I | GCAGC | 3 cut(s) | 124, 633, 746 |
| LweI | GCATC | 3 cut(s) | 574, 694, 1111 |
| MaeIII | GTNAC | 5 cut(s) | 413, 427, 494, 636, 665 |
| MalI | GATC | 3 cut(s) | 45, 138, 917 |
| MboI | GATC | 3 cut(s) | 43, 136, 915 |
| MfeI | CAATTG | 1 cut(s) | 438 |
| MhlI | GDGCHC | 3 cut(s) | 387, 724, 927 |
| MlyI | GAGTC | 1 cut(s) | 316 |
| MmeI | TCCRAC | 3 cut(s) | 316, 697, 784 |
| Mph1103I | ATGCAT | 1 cut(s) | 567 |
| MseI | TTAA | 4 cut(s) | 372, 516, 786, 1188 |
| MslI | CAYNNNNRTG | 2 cut(s) | 161, 248 |
| MspI | CCGG | 1 cut(s) | 1365 |
| MspR9I | CCNGG | 1 cut(s) | 1365 |
| MunI | CAATTG | 1 cut(s) | 438 |
| Mva1269I | GAATGC | 1 cut(s) | 439 |
| MvnI | CGCG | 2 cut(s) | 1311, 1427 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 691 |
| NciI | CCSGG | 1 cut(s) | 1365 |
| NdeII | GATC | 3 cut(s) | 43, 136, 915 |
| NlaIII | CATG | 8 cut(s) | 16, 425, 572, 665, 1109, 1165, 1331, 1341 |
| NmuCI | GTSAC | 2 cut(s) | 427, 494 |
| NsbI | TGCGCA | 1 cut(s) | 27 |
| NsiI | ATGCAT | 1 cut(s) | 567 |
| PaeR7I | CTCGAG | 1 cut(s) | 710 |
| PagI | TCATGA | 1 cut(s) | 568 |
| PctI | GAATGC | 1 cut(s) | 439 |
| PfeI | GAWTC | 5 cut(s) | 333, 356, 377, 861, 892 |
| PkrI | GCNGC | 4 cut(s) | 114, 648, 736, 1062 |
| PleI | GAGTC | 1 cut(s) | 316 |
| PpsI | GAGTC | 1 cut(s) | 316 |
| PsiI | TTATAA | 2 cut(s) | 189, 1239 |
| PspPI | GGNCC | 1 cut(s) | 214 |
| PstI | CTGCAG | 1 cut(s) | 114 |
| PstNI | CAGNNNCTG | 1 cut(s) | 646 |
| RsaI | GTAC | 2 cut(s) | 316, 538 |
| RsaNI | GTAC | 2 cut(s) | 315, 537 |
| RseI | CAYNNNNRTG | 2 cut(s) | 161, 248 |
| SaqAI | TTAA | 4 cut(s) | 372, 516, 786, 1188 |
| SatI | GCNGC | 4 cut(s) | 113, 647, 735, 1061 |
| Sau3AI | GATC | 3 cut(s) | 43, 136, 915 |
| Sau96I | GGNCC | 1 cut(s) | 214 |
| ScaI | AGTACT | 1 cut(s) | 538 |
| SchI | GAGTC | 1 cut(s) | 316 |
| ScrFI | CCNGG | 1 cut(s) | 1365 |
| SduI | GDGCHC | 3 cut(s) | 387, 724, 927 |
| SetI | ASST | 8 cut(s) | 342, 503, 648, 717, 744, 750, 1184, 1372 |
| SfaNI | GCATC | 3 cut(s) | 574, 694, 1111 |
| SfcI | CTRYAG | 1 cut(s) | 110 |
| Sfr274I | CTCGAG | 1 cut(s) | 710 |
| SlaI | CTCGAG | 1 cut(s) | 710 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 161, 248 |
| SmlI | CTYRAG | 2 cut(s) | 710, 941 |
| SmoI | CTYRAG | 2 cut(s) | 710, 941 |
| SsiI | CCGC | 4 cut(s) | 649, 1060, 1309, 1427 |
| StyD4I | CCNGG | 1 cut(s) | 1363 |
| TaaI | ACNGT | 3 cut(s) | 536, 676, 705 |
| TaqI | TCGA | 3 cut(s) | 595, 711, 1145 |
| TaqII | GACCGA | 1 cut(s) | 494 |
| TatI | WGTACW | 2 cut(s) | 314, 536 |
| TauI | GCSGC | 1 cut(s) | 1063 |
| TfiI | GAWTC | 5 cut(s) | 333, 356, 377, 861, 892 |
| Tru1I | TTAA | 4 cut(s) | 372, 516, 786, 1188 |
| Tru9I | TTAA | 4 cut(s) | 372, 516, 786, 1188 |
| TscAI | CASTG | 1 cut(s) | 679 |
| TseFI | GTSAC | 2 cut(s) | 427, 494 |
| TseI | GCWGC | 3 cut(s) | 112, 646, 734 |
| Tsp45I | GTSAC | 2 cut(s) | 427, 494 |
| TspGWI | ACGGA | 1 cut(s) | 370 |
| TspRI | CASTG | 1 cut(s) | 679 |
| XapI | RAATTY | 3 cut(s) | 344, 1150, 1441 |
| XhoI | CTCGAG | 1 cut(s) | 710 |
| XmiI | GTMKAC | 1 cut(s) | 678 |
| ZrmI | AGTACT | 1 cut(s) | 538 |
| Zsp2I | ATGCAT | 1 cut(s) | 567 |