Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002677.1

Orthogroup ID

OG0001433

Physical Location & Seq

Genomic Coordinates Reverse (-)

89647 .. 92437

Gene Structure 2791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002677.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgaattcttctaggaagcgaaagaaagcagctctgtatgaacaacttcgggctgccaccaattccactgctatgaacaaagcttcaattatagttgatgcatccaaatacatccaggagttgaagcagaaagtggacacgctcaaccaagacgttggaacttcgcaaaattcatcgtcacctgcgcaggttactgtggaaaccctagaaaggggttttcttattagtgtcttgtcagaaaagaactgcccaggtttgctcgtttccattctagaagcctttgaagacctgggccttgatgtgctcgatgctagggtttcttgtgcagacagtttccaactggaagcggttggaggagaaaaccaaggagaggctgatagcatagatgcacaggtggtgaaacaagcgagctgcgggtccagtcgggccttgttgatcagagacttcaaagaggcgtcgtcactaagagtgaattggagttttgaatctgaatcggaatcggaggatttgcagtcgagaaaggggaagacaggttcgggttctcaatcggtgctctctctctctttgcgagttcgacgctcttcctctgccaacgcagccgtttttgccccaaaacagctactgtgtgtccttctttggtctcggtcgtcgagacttcaaagaggcgtcgtcactaagagtgaattggagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.07

Weight (kDa)

7.6

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40435 AT2G40435 AT2G40435 AT3G56220 AT3G56220
fragaria_vesca	FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_7g25520 FvH4_7g25520 FvH4_7g25520
malus_domestica	MD01G1161700.v1.1 MD04G1170700.v1.1 MD07G1229700.v1.1 MD12G1184400.v1.1
prunus_persica	Prupe.2G259900_v2.0.a1 Prupe.6G289300_v2.0.a1 Prupe.6G289300_v2.0.a1
pyrus_communis	pycom04g15110 pycom07g20770 pycom12g17320
rosa_chinensis	RchiOBHm_Chr1g0371511 RchiOBHm_Chr3g0461381
rosa_laevigata	RLG00000024935 RLG00000026955
rosa_multiflora	Rmu_sc0000809.1_g000017 Rmu_sc0002677.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285620 Rroxscaffold_6G00418340 Rroxscaffold_6G00418640
rosa_rugosa	Rorug01G0364500 Rorug01G0364600 Rorug01G0364700 Rorug01G0364800.1 Rorug03G0049700 Rorug03G0049700 Rorug03G0049800 Rorug03G0049900 Rorug03G0050000 Rorug03G0050100
rosa_samantha	Rh1AG374800 Rh1BG338200 Rh1CG351500 Rh1DG369200 Rh3AG108000 Rh3BG112100 Rh3CG113800 Rh3DG113700
rosa_wichuraiana	Rw1G032970 Rw3G009210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
Acc16I	TGCGCA	1 cut(s)	186
Acc36I	ACCTGC	2 cut(s)	178, 190
AciI	CCGC	2 cut(s)	347, 414
AcsI	RAATTY	2 cut(s)	4, 169
AcyI	GRCGYC	2 cut(s)	455, 666
AfiI	CCNNNNNNNGG	3 cut(s)	210, 211, 370
AgsI	TTSAA	6 cut(s)	87, 124, 284, 448, 485, 659
AjnI	CCWGG	3 cut(s)	114, 250, 288
AloI	GAACNNNNNNTCC	2 cut(s)	517, 549
AluBI	AGCT	4 cut(s)	32, 83, 411, 619
AluI	AGCT	4 cut(s)	32, 83, 411, 619
Alw21I	GWGCWC	2 cut(s)	306, 555
Alw26I	GTCTC	3 cut(s)	435, 645, 646
AlwNI	CAGNNNCTG	1 cut(s)	622
AoxI	GGCC	2 cut(s)	292, 426
ApeKI	GCWGC	4 cut(s)	29, 53, 411, 596
ApoI	RAATTY	2 cut(s)	4, 169
Asp700I	GAANNNNTTC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	292, 417, 426
AsuHPI	GGTGA	2 cut(s)	171, 409
AvaII	GGWCC	1 cut(s)	417
BbsI	GAAGAC	2 cut(s)	291, 533
Bbv12I	GWGCWC	2 cut(s)	306, 555
BbvI	GCAGC	4 cut(s)	40, 41, 398, 608
BceAI	ACGGC	1 cut(s)	584
BciT130I	CCWGG	3 cut(s)	116, 252, 290
BclI	TGATCA	1 cut(s)	435
BcoDI	GTCTC	3 cut(s)	435, 645, 646
BfaI	CTAG	4 cut(s)	12, 206, 272, 312
BfuAI	ACCTGC	2 cut(s)	178, 190
BisI	GCNGC	4 cut(s)	30, 54, 412, 597
BlsI	GCNGC	4 cut(s)	31, 55, 413, 598
Bme1390I	CCNGG	3 cut(s)	116, 252, 290
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	3 cut(s)	292, 417, 426
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	3 cut(s)	116, 252, 290
BmsI	GCATC	4 cut(s)	88, 110, 298, 376
BpiI	GAAGAC	2 cut(s)	291, 533
BsaHI	GRCGYC	2 cut(s)	455, 666
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	3 cut(s)	250, 289, 364
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 211, 370
Bse1I	ACTGG	2 cut(s)	345, 420
BseBI	CCWGG	3 cut(s)	116, 252, 290
BseDI	CCNNGG	3 cut(s)	250, 289, 364
BseGI	GGATG	2 cut(s)	101, 111
BseLI	CCNNNNNNNGG	3 cut(s)	210, 211, 370
BseNI	ACTGG	2 cut(s)	345, 420
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	4 cut(s)	40, 41, 398, 608
BsgI	GTGCAG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	647
BshFI	GGCC	2 cut(s)	294, 428
BsiEI	CGRYCG	1 cut(s)	647
BsiHKAI	GWGCWC	2 cut(s)	306, 555
BslI	CCNNNNNNNGG	3 cut(s)	210, 211, 370
BsmAI	GTCTC	3 cut(s)	435, 645, 646
BsnI	GGCC	2 cut(s)	294, 428
Bso31I	GGTCTC	1 cut(s)	645
Bsp1286I	GDGCHC	2 cut(s)	306, 555
Bsp143I	GATC	1 cut(s)	435
BspACI	CCGC	2 cut(s)	347, 414
BspANI	GGCC	2 cut(s)	294, 428
BspLI	GGNNCC	1 cut(s)	418
BspMI	ACCTGC	2 cut(s)	178, 190
BspQI	GCTCTTC	1 cut(s)	586
BspTNI	GGTCTC	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	345, 420
BssECI	CCNNGG	3 cut(s)	250, 289, 364
BssMI	GATC	1 cut(s)	435
BssNI	GRCGYC	2 cut(s)	455, 666
BssT1I	CCWWGG	1 cut(s)	364
Bst2UI	CCWGG	3 cut(s)	116, 252, 290
Bst4CI	ACNGT	3 cut(s)	196, 332, 624
Bst6I	CTCTTC	1 cut(s)	586
BstACI	GRCGYC	2 cut(s)	455, 666
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	464, 675
BstF5I	GGATG	2 cut(s)	101, 111
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	3 cut(s)	435, 645, 646
BstMBI	GATC	1 cut(s)	435
BstMCI	CGRYCG	1 cut(s)	647
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 605
BstNI	CCWGG	3 cut(s)	116, 252, 290
BstSCI	CCNGG	3 cut(s)	114, 250, 288
BstV1I	GCAGC	4 cut(s)	40, 41, 398, 608
BstV2I	GAAGAC	2 cut(s)	291, 533
BstXI	CCANNNNNNTGG	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	294, 428
BtsCI	GGATG	2 cut(s)	101, 111
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	2 cut(s)	178, 190
Cac8I	GCNNGC	1 cut(s)	409
CaiI	CAGNNNCTG	1 cut(s)	622
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	292, 417, 426
CseI	GACGC	3 cut(s)	444, 585, 655
DdeI	CTNAG	2 cut(s)	464, 675
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	586
EarI	CTCTTC	1 cut(s)	586
Eco130I	CCWWGG	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	417
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	3 cut(s)	114, 250, 288
EcoT14I	CCWWGG	1 cut(s)	364
EcoT22I	ATGCAT	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	364
FaiI	YATR	4 cut(s)	39, 74, 92, 383
FauI	CCCGC	1 cut(s)	407
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	4 cut(s)	30, 54, 412, 597
FokI	GGATG	2 cut(s)	88, 98
Fsp4HI	GCNGC	4 cut(s)	30, 54, 412, 597
FspBI	CTAG	4 cut(s)	12, 206, 272, 312
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	4 cut(s)	30, 54, 412, 597
HaeIII	GGCC	2 cut(s)	294, 428
HgaI	GACGC	3 cut(s)	444, 585, 655
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	2 cut(s)	455, 666
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	81
HinfI	GANTC	3 cut(s)	485, 491, 497
HphI	GGTGA	2 cut(s)	171, 409
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	5 cut(s)	238, 440, 490, 496, 502
Hpy188III	TCNNGA	3 cut(s)	272, 516, 651
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	4 cut(s)	460, 579, 652, 671
HpyAV	CCTTC	1 cut(s)	641
HpyCH4III	ACNGT	3 cut(s)	196, 332, 624
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	4 cut(s)	101, 326, 389, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 605
HpyF3I	CTNAG	2 cut(s)	464, 675
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	2 cut(s)	455, 666
HspAI	GCGC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	1 cut(s)	435
LguI	GCTCTTC	1 cut(s)	586
Lsp1109I	GCAGC	4 cut(s)	40, 41, 398, 608
LweI	GCATC	4 cut(s)	88, 110, 298, 376
MaeI	CTAG	4 cut(s)	12, 206, 272, 312
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	4 cut(s)	177, 190, 459, 670
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MboII	GAAGA	3 cut(s)	296, 538, 573
MhlI	GDGCHC	2 cut(s)	306, 555
MluCI	AATT	6 cut(s)	4, 61, 87, 169, 472, 683
MmeI	TCCRAC	3 cut(s)	136, 331, 361
MnlI	CCTC	6 cut(s)	347, 364, 445, 496, 595, 656
Mph1103I	ATGCAT	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	71
MspR9I	CCNGG	3 cut(s)	116, 252, 290
MvaI	CCWGG	3 cut(s)	116, 252, 290
MwoI	GCNNNNNNNGC	2 cut(s)	596, 605
NdeII	GATC	1 cut(s)	435
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	3 cut(s)	177, 459, 670
NsbI	TGCGCA	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	103
PaqCI	CACCTGC	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	586
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	3 cut(s)	485, 491, 497
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	4 cut(s)	31, 55, 413, 598
Psp6I	CCWGG	3 cut(s)	114, 250, 288
PspGI	CCWGG	3 cut(s)	114, 250, 288
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	3 cut(s)	292, 417, 426
PstNI	CAGNNNCTG	1 cut(s)	622
RseI	CAYNNNNRTG	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	586
SatI	GCNGC	4 cut(s)	30, 54, 412, 597
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	3 cut(s)	292, 417, 426
ScrFI	CCNGG	3 cut(s)	116, 252, 290
SduI	GDGCHC	2 cut(s)	306, 555
SfaNI	GCATC	4 cut(s)	88, 110, 298, 376
SinI	GGWCC	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	71
Sse9I	AATT	6 cut(s)	4, 61, 87, 169, 472, 683
SsiI	CCGC	2 cut(s)	347, 414
SspMI	CTAG	4 cut(s)	12, 206, 272, 312
StyD4I	CCNGG	3 cut(s)	114, 250, 288
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	3 cut(s)	196, 332, 624
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	4 cut(s)	306, 515, 574, 650
TaqII	GACCGA	1 cut(s)	633
TasI	AATT	6 cut(s)	4, 61, 87, 169, 472, 683
TfiI	GAWTC	3 cut(s)	485, 491, 497
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	3 cut(s)	177, 459, 670
TseI	GCWGC	4 cut(s)	29, 53, 411, 596
Tsp45I	GTSAC	3 cut(s)	177, 459, 670
TspDTI	ATGAA	4 cut(s)	17, 54, 89, 162
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	417
XapI	RAATTY	2 cut(s)	4, 169
XbaI	TCTAGA	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	4 cut(s)	12, 206, 272, 312
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.