Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001433

Physical Location & Seq

Genomic Coordinates Forward (+)

26681371 .. 26683560

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1161700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTTTCTAGGGAGCACAAGAGGGCAGCACTCTATGAGAAGCTGCAACTTCTTCGTTCTATTACCAACTCTCATGCTCTAAACAAAACCTCAATCATAGTAGATGCCTCCAAGTACATTGAAGAGCTAAAACAAAAGGTGGAAAGACTGAATCAAGATATTGCAAATGCACAAACTACTTCTTCATCAAGTGACCAAAATCCGTTGCCTGGGGTTACAGTGGAAACCCTAGAAAAAGGATTTCTGATAAATGTGTTTTCTGAGAAGAGTTGCCCAGGTTTGCTTGTGTCTGTACTGGAAGCTTTCGAAGACTTGGGTCTCAATGTCCTTGAAGCTAGGGTTTCCTGTGAAGACAGTTTCAGGTTACAGGCAGTTGGAGGAGAAAATGAAGAGGAAGGTGAGAGCATTGACGCGCATGCAGTAAAGCAAGCAGTGGCAGTGGCTATAAAAAACTGGAGCGAAAATACCGAAAATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.47

Weight (kDa)

4.86

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-TF_ACT-like_plant	PF22754	72 - 150	1.1e-24	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40435 AT2G40435 AT2G40435 AT3G56220 AT3G56220
fragaria_vesca	FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_7g25520 FvH4_7g25520 FvH4_7g25520
malus_domestica	MD01G1161700.v1.1 MD04G1170700.v1.1 MD07G1229700.v1.1 MD12G1184400.v1.1
prunus_persica	Prupe.2G259900_v2.0.a1 Prupe.6G289300_v2.0.a1 Prupe.6G289300_v2.0.a1
pyrus_communis	pycom04g15110 pycom07g20770 pycom12g17320
rosa_chinensis	RchiOBHm_Chr1g0371511 RchiOBHm_Chr3g0461381
rosa_laevigata	RLG00000024935 RLG00000026955
rosa_multiflora	Rmu_sc0000809.1_g000017 Rmu_sc0002677.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285620 Rroxscaffold_6G00418340 Rroxscaffold_6G00418640
rosa_rugosa	Rorug01G0364500 Rorug01G0364600 Rorug01G0364700 Rorug01G0364800.1 Rorug03G0049700 Rorug03G0049700 Rorug03G0049800 Rorug03G0049900 Rorug03G0050000 Rorug03G0050100
rosa_samantha	Rh1AG374800 Rh1BG338200 Rh1CG351500 Rh1DG369200 Rh3AG108000 Rh3BG112100 Rh3CG113800 Rh3DG113700
rosa_wichuraiana	Rw1G032970 Rw3G009210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	413
AcsI	RAATTY	1 cut(s)	472
AfaI	GTAC	2 cut(s)	116, 294
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	122, 332
AjnI	CCWGG	2 cut(s)	208, 274
AluBI	AGCT	4 cut(s)	43, 127, 302, 335
AluI	AGCT	4 cut(s)	43, 127, 302, 335
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	323
ApeKI	GCWGC	2 cut(s)	26, 43
ApoI	RAATTY	1 cut(s)	472
AspLEI	GCGC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	410
AsuII	TTCGAA	1 cut(s)	306
BbsI	GAAGAC	2 cut(s)	315, 357
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	30, 38
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	2 cut(s)	210, 276
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	3 cut(s)	9, 230, 336
BisI	GCNGC	2 cut(s)	27, 44
BlsI	GCNGC	2 cut(s)	28, 45
Bme1390I	CCNGG	2 cut(s)	210, 276
BmrFI	CCNGG	2 cut(s)	210, 276
BmsI	GCATC	1 cut(s)	94
BoxI	GACNNNNGTC	1 cut(s)	315
BpiI	GAAGAC	2 cut(s)	315, 357
BpmI	CTGGAG	1 cut(s)	475
Bpu14I	TTCGAA	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	209, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	300, 458
BseBI	CCWGG	2 cut(s)	210, 276
BseDI	CCNNGG	2 cut(s)	209, 274
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	300, 458
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	2 cut(s)	30, 38
Bsh1236I	CGCG	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	413
BspQI	GCTCTTC	1 cut(s)	117
BspT104I	TTCGAA	1 cut(s)	306
BspTNI	GGTCTC	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	300, 458
BssECI	CCNNGG	2 cut(s)	209, 274
Bst2UI	CCWGG	2 cut(s)	210, 276
Bst4CI	ACNGT	2 cut(s)	220, 356
Bst6I	CTCTTC	3 cut(s)	117, 260, 384
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	417, 429
BstDEI	CTNAG	1 cut(s)	261
BstFNI	CGCG	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	415
BstMAI	GTCTC	1 cut(s)	323
BstNI	CCWGG	2 cut(s)	210, 276
BstNSI	RCATGY	1 cut(s)	419
BstPAI	GACNNNNGTC	1 cut(s)	315
BstSCI	CCNGG	2 cut(s)	208, 274
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	2 cut(s)	30, 38
BstV2I	GAAGAC	2 cut(s)	315, 357
BtsI	GCAGTG	2 cut(s)	438, 444
BtsIMutI	CAGTG	3 cut(s)	225, 438, 444
Cac8I	GCNNGC	2 cut(s)	417, 429
CfoI	GCGC	1 cut(s)	415
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	115, 293
CviAII	CATG	2 cut(s)	74, 416
CviJI	RGCY	5 cut(s)	43, 127, 302, 335, 443
CviKI_1	RGCY	5 cut(s)	43, 127, 302, 335, 443
CviQI	GTAC	2 cut(s)	115, 293
DdeI	CTNAG	1 cut(s)	261
Eam1104I	CTCTTC	3 cut(s)	117, 260, 384
EarI	CTCTTC	3 cut(s)	117, 260, 384
Eco31I	GGTCTC	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	208, 274
FaeI	CATG	2 cut(s)	77, 419
FaiI	YATR	5 cut(s)	36, 75, 98, 417, 446
FatI	CATG	2 cut(s)	73, 415
Fnu4HI	GCNGC	2 cut(s)	27, 44
Fsp4HI	GCNGC	2 cut(s)	27, 44
FspBI	CTAG	3 cut(s)	9, 230, 336
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	2 cut(s)	27, 44
GsuI	CTGGAG	1 cut(s)	475
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	1 cut(s)	415
Hin1II	CATG	2 cut(s)	77, 419
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	410
Hpy188I	TCNGA	2 cut(s)	246, 262
Hpy188III	TCNNGA	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	2 cut(s)	220, 356
HpyCH4V	TGCA	4 cut(s)	46, 164, 170, 419
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	77, 419
HspAI	GCGC	1 cut(s)	413
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	13, 456
LpnPI	CCDG	9 cut(s)	195, 222, 261, 281, 288, 346, 353, 358, 439
Lsp1109I	GCAGC	2 cut(s)	30, 38
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	3 cut(s)	9, 230, 336
MaeIII	GTNAC	3 cut(s)	191, 214, 363
MboII	GAAGA	7 cut(s)	44, 134, 174, 277, 320, 362, 401
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	5 cut(s)	15, 100, 118, 371, 385
MspR9I	CCNGG	2 cut(s)	210, 276
MvaI	CCWGG	2 cut(s)	210, 276
MvnI	CGCG	1 cut(s)	413
NlaIII	CATG	2 cut(s)	77, 419
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	419
NspV	TTCGAA	1 cut(s)	306
PaeI	GCATGC	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	28, 45
PshAI	GACNNNNGTC	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	208, 274
PspGI	CCWGG	2 cut(s)	208, 274
RsaI	GTAC	2 cut(s)	116, 294
RsaNI	GTAC	2 cut(s)	115, 293
SapI	GCTCTTC	1 cut(s)	117
SatI	GCNGC	2 cut(s)	27, 44
ScrFI	CCNGG	2 cut(s)	210, 276
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	9 cut(s)	45, 92, 129, 141, 280, 304, 337, 365, 400
SfaNI	GCATC	1 cut(s)	94
SfuI	TTCGAA	1 cut(s)	306
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	1 cut(s)	472
SspMI	CTAG	3 cut(s)	9, 230, 336
StyD4I	CCNGG	2 cut(s)	208, 274
TaaI	ACNGT	2 cut(s)	220, 356
TaqI	TCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	472
TatI	WGTACW	2 cut(s)	114, 292
TfiI	GAWTC	1 cut(s)	151
TscAI	CASTG	3 cut(s)	225, 438, 444
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	2 cut(s)	26, 43
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	174, 402
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	3 cut(s)	225, 438, 444
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	1 cut(s)	419
XspI	CTAG	3 cut(s)	9, 230, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.