Rorug03G0050100

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001433
Physical Location & Seq
Forward (+)
3921807 .. 3922457
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0050100.1

Sequence Viewer

Length: 651 bp
ATGGCTGCTGCAATATCATCTATTGAAAAACCACTTGCGCCACCATCTCCTTCTCCTACAATGGTCAAGCGAGGCTCGAACCACCCTGTTCACCAGACCCTGGCCTGTGCAGCCAATCTAGCTAACCTCCTCCCTACCGGCACTGTCTTTGCATTTCAAACCATAACTCCGATTTTCTCCAAAAATGGATGTTGCCAACAACTTTCCAATAAGTTCCTTACTTCATCTGTCATAATAACATGTGCTATCCTCTGTTTCTTATCTTCTTTTACTGACAGCTTCATAGACAATGGTGGAAAACGCTATTATGGAATCGCCACTTTCAAAGGCATGTACATCTTTAACTACAATAACATGGAGGAGGATATGAATAAGTACTTGGAAAAGTATAGAATAACGTTCATAGATTTTGTTCATGCCTTCATCTCACTAATGTTCTTCCTGATCTTTGCTCTTACCAACTCCAACGTACAAAGTTGTTTCTTTTCTGGAGGAGGAATAAATATCAGTGAACTCGCAATGAACTTGCCACTAGGTGCAGGGCTTTTATCAACCTTGTTGTTCACCATCTTCCCAACTACTCGAAGAGGAATCGGATACGCAGACATGGTGCCCAGTCTGCCCACCCAAAGCACTATCAATGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

23.66

Weight (kDa)

8.21

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 37 - 200 1.6e-57 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 610
AccB7I CCANNNNNTGG 1 cut(s) 100
AclI AACGTT 1 cut(s) 398
AdeI CACNNNGTG 1 cut(s) 536
AfaI GTAC 3 cut(s) 335, 377, 471
AfiI CCNNNNNNNGG 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 3 cut(s) 26, 158, 325
AjnI CCWGG 1 cut(s) 99
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 2 cut(s) 122, 279
AluI AGCT 2 cut(s) 122, 279
AlwNI CAGNNNCTG 1 cut(s) 100
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 3 cut(s) 5, 8, 110
AspLEI GCGC 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 83, 556
BaeGI GKGCMC 1 cut(s) 615
BanI GGYRCC 1 cut(s) 610
BbvI GCAGC 1 cut(s) 122
BccI CCATC 2 cut(s) 52, 575
BciT130I CCWGG 1 cut(s) 101
BciVI GTATCC 1 cut(s) 590
BfaI CTAG 2 cut(s) 119, 533
BfuI GTATCC 1 cut(s) 590
BisI GCNGC 3 cut(s) 6, 9, 111
BlsI GCNGC 3 cut(s) 7, 10, 112
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 612
BmrFI CCNGG 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 609
BmuI ACTGGG 1 cut(s) 609
BpmI CTGGAG 1 cut(s) 510
BsaJI CCNNGG 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 615
Bse3DI GCAATG 1 cut(s) 525
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 525
BseNI ACTGG 1 cut(s) 615
BseRI GAGGAG 3 cut(s) 119, 374, 507
BseSI GKGCMC 1 cut(s) 615
BseXI GCAGC 1 cut(s) 122
BsgI GTGCAG 2 cut(s) 129, 558
BshFI GGCC 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 610
BsiSI CCGG 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 100
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 615
Bsp1407I TGTACA 1 cut(s) 333
Bsp143I GATC 1 cut(s) 444
BspANI GGCC 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 525
BsrFI RCCGGY 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 333
BsrI ACTGG 1 cut(s) 615
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 580
BstAUI TGTACA 1 cut(s) 333
BstF5I GGATG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 447
BstMBI GATC 1 cut(s) 444
BstMWI GCNNNNNNNGC 3 cut(s) 110, 119, 619
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 2 cut(s) 243, 334
BstSCI CCNGG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 615
BstV1I GCAGC 1 cut(s) 122
BsuI GTATCC 1 cut(s) 590
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 194
BtsIMutI CAGTG 2 cut(s) 141, 514
CaiI CAGNNNCTG 1 cut(s) 100
CfoI GCGC 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 137
Csp6I GTAC 3 cut(s) 334, 376, 470
CviAII CATG 5 cut(s) 240, 331, 355, 416, 607
CviJI RGCY 7 cut(s) 5, 75, 104, 113, 122, 279, 544
CviKI_1 RGCY 7 cut(s) 5, 75, 104, 113, 122, 279, 544
CviQI GTAC 3 cut(s) 334, 376, 470
DpnI GATC 1 cut(s) 446
DpnII GATC 1 cut(s) 444
DraIII CACNNNGTG 1 cut(s) 536
Eam1104I CTCTTC 1 cut(s) 580
EarI CTCTTC 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 99
FaeI CATG 5 cut(s) 243, 334, 358, 419, 610
FatI CATG 5 cut(s) 239, 330, 354, 415, 606
Fnu4HI GCNGC 3 cut(s) 6, 9, 111
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 3 cut(s) 6, 9, 111
FspBI CTAG 2 cut(s) 119, 533
GlaI GCGC 1 cut(s) 39
GluI GCNGC 3 cut(s) 6, 9, 111
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 138
HhaI GCGC 1 cut(s) 40
Hin1II CATG 5 cut(s) 243, 334, 358, 419, 610
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 2 cut(s) 312, 591
HpaII CCGG 1 cut(s) 138
HphI GGTGA 2 cut(s) 83, 556
Hpy166II GTNNAC 3 cut(s) 91, 512, 564
Hpy188I TCNGA 2 cut(s) 171, 596
Hpy188III TCNNGA 2 cut(s) 442, 489
Hpy8I GTNNAC 3 cut(s) 91, 512, 564
HpyAV CCTTC 2 cut(s) 60, 430
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 2 cut(s) 398, 468
HpyCH4V TGCA 4 cut(s) 11, 110, 152, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 119, 619
HpySE526I ACGT 2 cut(s) 398, 468
Hsp92II CATG 5 cut(s) 243, 334, 358, 419, 610
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 444
Lsp1109I GCAGC 1 cut(s) 122
MaeI CTAG 2 cut(s) 119, 533
MaeII ACGT 2 cut(s) 398, 468
MalI GATC 1 cut(s) 446
MboI GATC 1 cut(s) 444
MboII GAAGA 4 cut(s) 255, 430, 562, 597
MhlI GDGCHC 1 cut(s) 615
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 9 cut(s) 65, 137, 140, 260, 352, 355, 485, 488, 581
MseI TTAA 1 cut(s) 342
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 3 cut(s) 110, 119, 619
NdeII GATC 1 cut(s) 444
NlaIII CATG 5 cut(s) 243, 334, 358, 419, 610
NlaIV GGNNCC 1 cut(s) 612
NspI RCATGY 2 cut(s) 243, 334
PciI ACATGT 1 cut(s) 239
PfeI GAWTC 2 cut(s) 312, 591
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 3 cut(s) 7, 10, 112
PscI ACATGT 1 cut(s) 239
Psp1406I AACGTT 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 612
PstNI CAGNNNCTG 1 cut(s) 100
RsaI GTAC 3 cut(s) 335, 377, 471
RsaNI GTAC 3 cut(s) 334, 376, 470
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 3 cut(s) 6, 9, 111
Sau3AI GATC 1 cut(s) 444
ScaI AGTACT 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 615
SetI ASST 7 cut(s) 124, 129, 281, 401, 471, 538, 557
SspMI CTAG 2 cut(s) 119, 533
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 2 cut(s) 401, 471
TaqI TCGA 2 cut(s) 77, 583
TatI WGTACW 2 cut(s) 333, 375
TfiI GAWTC 2 cut(s) 312, 591
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 148, 514
TseI GCWGC 3 cut(s) 5, 8, 110
TspDTI ATGAA 7 cut(s) 213, 271, 383, 391, 404, 412, 536
TspRI CASTG 2 cut(s) 148, 514
Van91I CCANNNNNTGG 1 cut(s) 100
XceI RCATGY 2 cut(s) 243, 334
XspI CTAG 2 cut(s) 119, 533
ZrmI AGTACT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.