Prupe.6G289300_v2.0.a1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001433
Physical Location & Seq
Forward (+)
26723282 .. 26724895
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G289300.2

Sequence Viewer

Length: 465 bp
ATGAGTTCCGGGGACCGAAAGAAAGCAGTTCTTTATCATCAATTGCAACAACTTCGGGCTGCCACCAATTCCAATGCTCTGAACAAAGCTTCAATTATTGTTGATGCATCCAATTATATCAAGGAGTTGAAGCAAAAAGTGGACACACTCAGGCAAGGCGTTGGAACTTCGACTGCCCCAAATCCTTCACCAGCGCAGGTTACAGTGGAAACCTTAGAAAGGGGTTTCCTTATTAATGTGTTGTCGGACAAGAACTCCCCGGGTTTGCTCGTCTCTATTCTCGAAGCCTTTGAGGAGCTGGGCCTCGATGTTCTTGATGCTAGGGTTTCTTGTTCAGACACCTTCCAACTAGAAGCAGTCGGAGGAGAAAACCAGGGGCAAGCGGATAGTATAGATGCTCACGTGGTGAAACAAGCAGTCTTGCAAGCTATTCAGAACTGGAGCCAAAGCAGTGAGCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.59

Weight (kDa)

4.87

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 187
AciI CCGC 1 cut(s) 383
AcvI CACGTG 1 cut(s) 403
AdeI CACNNNGTG 1 cut(s) 406
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 2 cut(s) 93, 130
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 3 cut(s) 89, 298, 428
AluI AGCT 3 cut(s) 89, 298, 428
Alw26I GTCTC 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 259
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 59
AseI ATTAAT 1 cut(s) 234
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 13, 301
AsuC2I CCSGG 3 cut(s) 10, 260, 261
AsuHPI GGTGA 2 cut(s) 180, 418
AvaI CYCGRG 1 cut(s) 259
AvaII GGWCC 1 cut(s) 13
BbrPI CACGTG 1 cut(s) 403
BbvI GCAGC 1 cut(s) 46
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 1 cut(s) 374
BcnI CCSGG 3 cut(s) 10, 260, 261
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 2 cut(s) 321, 350
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 4 cut(s) 10, 260, 261, 374
Bme18I GGWCC 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 13, 301
BmiI GGNNCC 2 cut(s) 14, 443
BmrFI CCNGG 4 cut(s) 10, 260, 261, 374
BmsI GCATC 4 cut(s) 94, 116, 307, 385
BpmI CTGGAG 1 cut(s) 460
BpuMI CCSGG 3 cut(s) 10, 260, 261
BsaAI YACGTR 1 cut(s) 403
BsaJI CCNNGG 4 cut(s) 9, 258, 259, 373
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 443
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 4 cut(s) 9, 258, 259, 373
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 443
BseRI GAGGAG 2 cut(s) 308, 378
BseXI GCAGC 1 cut(s) 46
BseYI CCCAGC 1 cut(s) 298
BshFI GGCC 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 2 cut(s) 9, 260
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 277
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 303
BsoBI CYCGRG 1 cut(s) 259
BspACI CCGC 1 cut(s) 383
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 14, 443
BspMI ACCTGC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 443
BssECI CCNNGG 4 cut(s) 9, 258, 259, 373
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 403
BstC8I GCNNGC 2 cut(s) 381, 426
BstDEI CTNAG 2 cut(s) 149, 214
BstENI CCTNNNNNAGG 1 cut(s) 217
BstF5I GGATG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 277
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 4 cut(s) 8, 258, 259, 372
BstV1I GCAGC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 2 cut(s) 210, 457
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 381, 426
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 13, 301
Cfr9I CCCGGG 1 cut(s) 259
CviJI RGCY 7 cut(s) 59, 89, 287, 298, 303, 428, 444
CviKI_1 RGCY 7 cut(s) 59, 89, 287, 298, 303, 428, 444
DdeI CTNAG 2 cut(s) 149, 214
DraIII CACNNNGTG 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 13
Eco72I CACGTG 1 cut(s) 403
Eco88I CYCGRG 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 277
FaiI YATR 2 cut(s) 117, 392
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FaqI GGGAC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 2 cut(s) 321, 350
GlaI GCGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 60
GsaI CCCAGC 1 cut(s) 302
GsuI CTGGAG 1 cut(s) 460
HaeIII GGCC 1 cut(s) 303
HapII CCGG 2 cut(s) 9, 260
HhaI GCGC 1 cut(s) 196
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HindIII AAGCTT 1 cut(s) 87
HpaII CCGG 2 cut(s) 9, 260
HphI GGTGA 2 cut(s) 180, 418
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 5 cut(s) 81, 247, 337, 362, 435
Hpy188III TCNNGA 2 cut(s) 281, 314
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 195, 352
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 3 cut(s) 46, 107, 424
HpyF3I CTNAG 2 cut(s) 149, 214
HpySE526I ACGT 1 cut(s) 402
HspAI GCGC 1 cut(s) 194
LmnI GCTCC 2 cut(s) 295, 441
LpnPI CCDG 9 cut(s) 22, 136, 182, 204, 273, 284, 359, 386, 424
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 4 cut(s) 94, 116, 307, 385
MaeI CTAG 2 cut(s) 321, 350
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 199
MfeI CAATTG 1 cut(s) 41
MluCI AATT 4 cut(s) 41, 67, 93, 112
MmeI TCCRAC 4 cut(s) 142, 225, 340, 370
MnlI CCTC 3 cut(s) 286, 314, 356
Mph1103I ATGCAT 1 cut(s) 109
MseI TTAA 1 cut(s) 234
MspI CCGG 2 cut(s) 9, 260
MspR9I CCNGG 4 cut(s) 10, 260, 261, 374
MunI CAATTG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 374
NciI CCSGG 3 cut(s) 10, 260, 261
NlaIV GGNNCC 2 cut(s) 14, 443
NsiI ATGCAT 1 cut(s) 109
PkrI GCNGC 1 cut(s) 61
PmaCI CACGTG 1 cut(s) 403
PmlI CACGTG 1 cut(s) 403
Ppu21I YACGTR 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 372
PspCI CACGTG 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 298
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 2 cut(s) 14, 443
PspPI GGNCC 2 cut(s) 13, 301
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 60
Sau96I GGNCC 2 cut(s) 13, 301
ScrFI CCNGG 4 cut(s) 10, 260, 261, 374
SetI ASST 7 cut(s) 91, 201, 215, 300, 344, 405, 430
SfaNI GCATC 4 cut(s) 94, 116, 307, 385
SinI GGWCC 1 cut(s) 13
SmaI CCCGGG 1 cut(s) 261
Sse9I AATT 4 cut(s) 41, 67, 93, 112
SsiI CCGC 1 cut(s) 383
SspMI CTAG 2 cut(s) 321, 350
StyD4I CCNGG 4 cut(s) 8, 258, 259, 372
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 405
TaqI TCGA 3 cut(s) 170, 282, 306
TaqII GACCGA 1 cut(s) 30
TasI AATT 4 cut(s) 41, 67, 93, 112
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 2 cut(s) 210, 457
TseI GCWGC 1 cut(s) 59
TspMI CCCGGG 1 cut(s) 259
TspRI CASTG 2 cut(s) 210, 457
VpaK11BI GGWCC 1 cut(s) 13
VspI ATTAAT 1 cut(s) 234
XagI CCTNNNNNAGG 1 cut(s) 217
XmaI CCCGGG 1 cut(s) 259
XspI CTAG 2 cut(s) 321, 350
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.