Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001433

Physical Location & Seq

Genomic Coordinates Forward (+)

6286687 .. 6288311

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10480.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGCTCTTCTAGGGGGCGAAAGAAAGCAGCTCTATATGAAAAGCTTCGGGCTGCCACCAATTCTACTGCTATGAACAGAGCTTCAATTATAGTTGATGCATCCAAATACATCCAAGAGTTGAAGAAGAAAGTCGACACACTCAATCAAGACGTTAAAGCTTCACAAAATCCATCGTCACCGGCGGTTACTGTGGAAACCCTAGAAAAGGGTTTTCTTATAAGTGTGTTGTCAGAAAAGAACTGCCCAGGTTTGCTTGTTTCGATCCTAGAAGCCTTTGAAGACCTGGGCCTTGATGTGCTCGATGCTAGGGTTTCTTGTGCAGACAATTTCCGACTGGAAGCGGTTGGAGGAGAAAACCAAGGAGAGGCTGATAGCATAGACGCACAGGTGGTGAAACAAGCGGTGTTGCAAGCCATTCAGAACTGGAGCCAGAACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

15.9

Weight (kDa)

5.23

Isoelectric Point (pI)

28.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-TF_ACT-like_plant	PF22754	63 - 121	9e-20	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40435 AT2G40435 AT2G40435 AT3G56220 AT3G56220
fragaria_vesca	FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_6g10480 FvH4_7g25520 FvH4_7g25520 FvH4_7g25520
malus_domestica	MD01G1161700.v1.1 MD04G1170700.v1.1 MD07G1229700.v1.1 MD12G1184400.v1.1
prunus_persica	Prupe.2G259900_v2.0.a1 Prupe.6G289300_v2.0.a1 Prupe.6G289300_v2.0.a1
pyrus_communis	pycom04g15110 pycom07g20770 pycom12g17320
rosa_chinensis	RchiOBHm_Chr1g0371511 RchiOBHm_Chr3g0461381
rosa_laevigata	RLG00000024935 RLG00000026955
rosa_multiflora	Rmu_sc0000809.1_g000017 Rmu_sc0002677.1_g000017
rosa_roxburghii	Rroxscaffold_4G00285620 Rroxscaffold_6G00418340 Rroxscaffold_6G00418640
rosa_rugosa	Rorug01G0364500 Rorug01G0364600 Rorug01G0364700 Rorug01G0364800.1 Rorug03G0049700 Rorug03G0049700 Rorug03G0049800 Rorug03G0049900 Rorug03G0050000 Rorug03G0050100
rosa_samantha	Rh1AG374800 Rh1BG338200 Rh1CG351500 Rh1DG369200 Rh3AG108000 Rh3BG112100 Rh3CG113800 Rh3DG113700
rosa_wichuraiana	Rw1G032970 Rw3G009210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	3 cut(s)	185, 344, 404
AclWI	GGATC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	208, 367
AgsI	TTSAA	3 cut(s)	87, 124, 281
AjnI	CCWGG	2 cut(s)	247, 285
AluBI	AGCT	5 cut(s)	6, 32, 46, 83, 161
AluI	AGCT	5 cut(s)	6, 32, 46, 83, 161
Alw21I	GWGCWC	2 cut(s)	8, 303
AlwI	GGATC	1 cut(s)	259
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	29, 53
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	2 cut(s)	171, 406
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	2 cut(s)	8, 303
BbvI	GCAGC	2 cut(s)	40, 41
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	2 cut(s)	249, 287
BfaI	CTAG	5 cut(s)	12, 203, 269, 309, 442
BisI	GCNGC	2 cut(s)	30, 54
BlsI	GCNGC	2 cut(s)	31, 55
Bme1390I	CCNGG	2 cut(s)	249, 287
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	2 cut(s)	249, 287
BmsI	GCATC	3 cut(s)	88, 110, 295
BpiI	GAAGAC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	247, 286, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 367
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	342, 431
BseBI	CCWGG	2 cut(s)	249, 287
BseDI	CCNNGG	3 cut(s)	247, 286, 361
BseGI	GGATG	2 cut(s)	101, 111
BseLI	CCNNNNNNNGG	2 cut(s)	208, 367
BseNI	ACTGG	2 cut(s)	342, 431
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	40, 41
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	291
BsiHKAI	GWGCWC	2 cut(s)	8, 303
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	208, 367
BsnI	GGCC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	8, 303
Bsp143I	GATC	1 cut(s)	264
BspACI	CCGC	3 cut(s)	185, 344, 404
BspANI	GGCC	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	431
BspPI	GGATC	1 cut(s)	259
BspQI	GCTCTTC	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	342, 431
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	3 cut(s)	247, 286, 361
BssMI	GATC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	249, 287
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	414
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	101, 111
BstKTI	GATC	1 cut(s)	267
BstMBI	GATC	1 cut(s)	264
BstNI	CCWGG	2 cut(s)	249, 287
BstSCI	CCNGG	2 cut(s)	247, 285
BstV1I	GCAGC	2 cut(s)	40, 41
BstV2I	GAAGAC	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	101, 111
Cac8I	GCNNGC	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	289
CseI	GACGC	1 cut(s)	392
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	247, 285
EcoT14I	CCWWGG	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	361
FaiI	YATR	6 cut(s)	37, 39, 74, 92, 221, 380
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	30, 54
FokI	GGATG	2 cut(s)	88, 98
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	30, 54
FspBI	CTAG	5 cut(s)	12, 203, 269, 309, 442
GluI	GCNGC	2 cut(s)	30, 54
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	392
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	2 cut(s)	44, 159
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	2 cut(s)	171, 406
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	3 cut(s)	235, 335, 423
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	101, 323, 412
HpySE526I	ACGT	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	264
LguI	GCTCTTC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	429
LpnPI	CCDG	8 cut(s)	195, 234, 261, 272, 299, 323, 374, 412
Lsp1109I	GCAGC	2 cut(s)	40, 41
LweI	GCATC	3 cut(s)	88, 110, 295
MaeI	CTAG	5 cut(s)	12, 203, 269, 309, 442
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	177, 187
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	3 cut(s)	136, 139, 293
MhlI	GDGCHC	2 cut(s)	8, 303
MluCI	AATT	3 cut(s)	61, 87, 328
MmeI	TCCRAC	2 cut(s)	328, 358
MnlI	CCTC	2 cut(s)	344, 361
Mph1103I	ATGCAT	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	1 cut(s)	156
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	249, 287
MvaI	CCWGG	2 cut(s)	249, 287
NdeII	GATC	1 cut(s)	264
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	31, 55
PsiI	TTATAA	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	247, 285
PspGI	CCWGG	2 cut(s)	247, 285
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	8
SalI	GTCGAC	1 cut(s)	134
SapI	GCTCTTC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	30, 54
Sau3AI	GATC	1 cut(s)	264
Sau96I	GGNCC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	249, 287
SduI	GDGCHC	2 cut(s)	8, 303
SetI	ASST	9 cut(s)	8, 34, 48, 85, 156, 163, 253, 288, 393
SfaNI	GCATC	3 cut(s)	88, 110, 295
SgrAI	CRCCGGYG	1 cut(s)	181
Sse9I	AATT	3 cut(s)	61, 87, 328
SsiI	CCGC	3 cut(s)	185, 344, 404
SspMI	CTAG	5 cut(s)	12, 203, 269, 309, 442
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	247, 285
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	3 cut(s)	135, 263, 303
TasI	AATT	3 cut(s)	61, 87, 328
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	2 cut(s)	29, 53
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	2 cut(s)	54, 89
XagI	CCTNNNNNAGG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	5 cut(s)	12, 203, 269, 309, 442
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.